Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06497

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06496 and MPMX19_06497 are separated by 30 nucleotidesMPMX19_06497 and MPMX19_06498 are separated by 14 nucleotidesMPMX19_06498 and MPMX19_06499 are separated by 7 nucleotides MPMX19_06496: MPMX19_06496 - FAD-dependent urate hydroxylase, at 278,988 to 280,448 _06496 MPMX19_06497: MPMX19_06497 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 280,479 to 281,207 _06497 MPMX19_06498: MPMX19_06498 - Lipopolysaccharide export system ATP-binding protein LptB, at 281,222 to 282,109 _06498 MPMX19_06499: MPMX19_06499 - hypothetical protein, at 282,117 to 283,955 _06499 Position (kb) 280 281 282Strain fitness (log2 ratio) -2 -1 0 1 2at 279.555 kb on - strand, within MPMX19_06496at 279.555 kb on - strand, within MPMX19_06496at 279.555 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.557 kb on - strand, within MPMX19_06496at 279.566 kb on - strand, within MPMX19_06496at 279.566 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 279.677 kb on - strand, within MPMX19_06496at 280.119 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.171 kb on + strand, within MPMX19_06496at 280.172 kb on - strand, within MPMX19_06496at 280.172 kb on - strand, within MPMX19_06496at 280.172 kb on - strand, within MPMX19_06496at 280.172 kb on - strand, within MPMX19_06496at 280.172 kb on - strand, within MPMX19_06496at 280.413 kb on + strandat 280.413 kb on + strandat 280.413 kb on + strandat 280.413 kb on + strandat 280.414 kb on - strandat 280.504 kb on + strandat 280.505 kb on - strandat 280.505 kb on - strandat 280.583 kb on - strand, within MPMX19_06497at 280.583 kb on - strand, within MPMX19_06497at 280.583 kb on - strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.855 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.891 kb on + strand, within MPMX19_06497at 280.892 kb on - strand, within MPMX19_06497at 281.100 kb on + strand, within MPMX19_06497at 281.164 kb on + strandat 281.164 kb on + strandat 281.164 kb on + strandat 281.165 kb on - strandat 281.165 kb on - strandat 281.165 kb on - strandat 281.297 kb on - strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.307 kb on + strandat 281.308 kb on - strandat 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.589 kb on + strand, within MPMX19_06498at 281.590 kb on - strand, within MPMX19_06498at 281.590 kb on - strand, within MPMX19_06498at 281.590 kb on - strand, within MPMX19_06498at 282.178 kb on + strandat 282.179 kb on - strandat 282.193 kb on + strandat 282.193 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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279,555 - MPMX19_06496 0.39 +0.5
279,555 - MPMX19_06496 0.39 -1.3
279,555 - MPMX19_06496 0.39 -1.2
279,557 - MPMX19_06496 0.39 +0.2
279,557 - MPMX19_06496 0.39 -1.6
279,557 - MPMX19_06496 0.39 -0.9
279,557 - MPMX19_06496 0.39 -0.9
279,557 - MPMX19_06496 0.39 +0.8
279,557 - MPMX19_06496 0.39 -0.3
279,557 - MPMX19_06496 0.39 -0.7
279,557 - MPMX19_06496 0.39 +0.9
279,566 - MPMX19_06496 0.40 -0.8
279,566 - MPMX19_06496 0.40 -1.5
279,677 - MPMX19_06496 0.47 -0.7
279,677 - MPMX19_06496 0.47 -1.0
279,677 - MPMX19_06496 0.47 +1.7
279,677 - MPMX19_06496 0.47 -0.4
279,677 - MPMX19_06496 0.47 -1.4
279,677 - MPMX19_06496 0.47 +0.2
279,677 - MPMX19_06496 0.47 -0.6
279,677 - MPMX19_06496 0.47 -1.5
279,677 - MPMX19_06496 0.47 +0.7
279,677 - MPMX19_06496 0.47 -1.2
279,677 - MPMX19_06496 0.47 -0.7
279,677 - MPMX19_06496 0.47 -1.3
280,119 + MPMX19_06496 0.77 -1.8
280,171 + MPMX19_06496 0.81 +1.3
280,171 + MPMX19_06496 0.81 -0.3
280,171 + MPMX19_06496 0.81 +0.2
280,171 + MPMX19_06496 0.81 +1.6
280,171 + MPMX19_06496 0.81 -0.8
280,171 + MPMX19_06496 0.81 -1.3
280,172 - MPMX19_06496 0.81 -0.2
280,172 - MPMX19_06496 0.81 -1.7
280,172 - MPMX19_06496 0.81 -1.2
280,172 - MPMX19_06496 0.81 -0.3
280,172 - MPMX19_06496 0.81 +0.1
280,413 + -0.8
280,413 + -0.3
280,413 + +0.2
280,413 + -1.5
280,414 - +1.8
280,504 + +0.7
280,505 - -0.3
280,505 - +1.7
280,583 - MPMX19_06497 0.14 -0.9
280,583 - MPMX19_06497 0.14 +0.7
280,583 - MPMX19_06497 0.14 -0.7
280,855 + MPMX19_06497 0.52 +0.9
280,855 + MPMX19_06497 0.52 -0.8
280,855 + MPMX19_06497 0.52 +0.2
280,855 + MPMX19_06497 0.52 -0.6
280,855 + MPMX19_06497 0.52 +0.1
280,855 + MPMX19_06497 0.52 -1.7
280,891 + MPMX19_06497 0.57 -1.2
280,891 + MPMX19_06497 0.57 +0.1
280,891 + MPMX19_06497 0.57 -1.0
280,891 + MPMX19_06497 0.57 -0.1
280,891 + MPMX19_06497 0.57 -0.8
280,891 + MPMX19_06497 0.57 -0.6
280,892 - MPMX19_06497 0.57 +0.8
281,100 + MPMX19_06497 0.85 +0.7
281,164 + +0.5
281,164 + -0.9
281,164 + -1.4
281,165 - +0.2
281,165 - +0.5
281,165 - +0.5
281,297 - -0.4
281,307 + -0.5
281,307 + +0.5
281,307 + -0.9
281,307 + +0.7
281,307 + +0.2
281,307 + -1.1
281,308 - -0.1
281,589 + MPMX19_06498 0.41 +0.1
281,589 + MPMX19_06498 0.41 +2.0
281,589 + MPMX19_06498 0.41 -1.1
281,589 + MPMX19_06498 0.41 -0.1
281,589 + MPMX19_06498 0.41 +1.7
281,589 + MPMX19_06498 0.41 +1.8
281,589 + MPMX19_06498 0.41 -2.2
281,590 - MPMX19_06498 0.41 -0.9
281,590 - MPMX19_06498 0.41 -1.1
281,590 - MPMX19_06498 0.41 -0.8
282,178 + -0.3
282,179 - -1.7
282,193 + -0.1
282,193 + -0.8

Or see this region's nucleotide sequence