Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06491

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06489 and MPMX19_06490 overlap by 4 nucleotidesMPMX19_06490 and MPMX19_06491 are separated by 54 nucleotidesMPMX19_06491 and MPMX19_06492 are separated by 223 nucleotides MPMX19_06489: MPMX19_06489 - Taurine import ATP-binding protein TauB, at 272,483 to 273,286 _06489 MPMX19_06490: MPMX19_06490 - Putative aliphatic sulfonates transport permease protein SsuC, at 273,283 to 274,134 _06490 MPMX19_06491: MPMX19_06491 - Alpha-ketoglutarate-dependent taurine dioxygenase, at 274,189 to 275,040 _06491 MPMX19_06492: MPMX19_06492 - IS5 family transposase ISAzs10, at 275,264 to 276,343 _06492 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1 2at 273.215 kb on + strandat 273.215 kb on + strandat 273.215 kb on + strandat 273.216 kb on - strandat 273.216 kb on - strandat 273.521 kb on - strand, within MPMX19_06490at 273.521 kb on - strand, within MPMX19_06490at 273.521 kb on - strand, within MPMX19_06490at 273.521 kb on - strand, within MPMX19_06490at 273.521 kb on - strand, within MPMX19_06490at 273.521 kb on - strand, within MPMX19_06490at 273.909 kb on - strand, within MPMX19_06490at 274.603 kb on + strand, within MPMX19_06491at 274.603 kb on + strand, within MPMX19_06491at 274.603 kb on + strand, within MPMX19_06491at 274.603 kb on + strand, within MPMX19_06491at 274.603 kb on + strand, within MPMX19_06491at 274.603 kb on + strand, within MPMX19_06491at 274.604 kb on - strand, within MPMX19_06491at 274.604 kb on - strand, within MPMX19_06491at 274.604 kb on - strand, within MPMX19_06491at 274.876 kb on + strand, within MPMX19_06491at 274.876 kb on + strand, within MPMX19_06491at 274.876 kb on + strand, within MPMX19_06491at 274.877 kb on - strand, within MPMX19_06491at 274.877 kb on - strand, within MPMX19_06491at 274.884 kb on + strand, within MPMX19_06491at 274.885 kb on - strand, within MPMX19_06491at 274.885 kb on - strand, within MPMX19_06491at 274.900 kb on + strand, within MPMX19_06491at 274.900 kb on + strand, within MPMX19_06491at 274.950 kb on + strand, within MPMX19_06491at 274.950 kb on + strand, within MPMX19_06491at 274.950 kb on + strand, within MPMX19_06491at 274.950 kb on + strand, within MPMX19_06491at 274.950 kb on + strand, within MPMX19_06491at 274.951 kb on - strand, within MPMX19_06491at 274.951 kb on - strand, within MPMX19_06491at 274.951 kb on - strand, within MPMX19_06491at 274.951 kb on - strand, within MPMX19_06491at 274.982 kb on - strandat 275.001 kb on + strandat 275.001 kb on + strandat 275.001 kb on + strandat 275.001 kb on + strandat 275.001 kb on + strandat 275.001 kb on + strandat 275.002 kb on - strandat 275.036 kb on - strandat 275.072 kb on - strandat 275.103 kb on - strandat 275.184 kb on + strandat 275.184 kb on + strandat 275.306 kb on + strandat 275.306 kb on + strandat 275.306 kb on + strandat 275.306 kb on + strandat 275.307 kb on - strandat 275.307 kb on - strandat 275.307 kb on - strandat 275.307 kb on - strandat 275.307 kb on - strandat 275.307 kb on - strandat 275.307 kb on - strandat 275.412 kb on - strand, within MPMX19_06492at 275.480 kb on + strand, within MPMX19_06492at 275.480 kb on + strand, within MPMX19_06492at 275.480 kb on + strand, within MPMX19_06492at 275.480 kb on + strand, within MPMX19_06492at 275.480 kb on + strand, within MPMX19_06492at 275.480 kb on + strand, within MPMX19_06492at 275.523 kb on - strand, within MPMX19_06492at 275.523 kb on - strand, within MPMX19_06492at 275.582 kb on - strand, within MPMX19_06492at 275.582 kb on - strand, within MPMX19_06492at 275.865 kb on - strand, within MPMX19_06492

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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273,215 + -1.3
273,215 + +0.7
273,215 + +1.1
273,216 - +0.1
273,216 - -0.1
273,521 - MPMX19_06490 0.28 -0.2
273,521 - MPMX19_06490 0.28 -0.6
273,521 - MPMX19_06490 0.28 +0.9
273,521 - MPMX19_06490 0.28 -0.5
273,521 - MPMX19_06490 0.28 -0.3
273,521 - MPMX19_06490 0.28 -0.1
273,909 - MPMX19_06490 0.73 -0.8
274,603 + MPMX19_06491 0.49 -0.8
274,603 + MPMX19_06491 0.49 -0.8
274,603 + MPMX19_06491 0.49 -0.3
274,603 + MPMX19_06491 0.49 -0.1
274,603 + MPMX19_06491 0.49 -0.7
274,603 + MPMX19_06491 0.49 -0.8
274,604 - MPMX19_06491 0.49 -1.2
274,604 - MPMX19_06491 0.49 -1.5
274,604 - MPMX19_06491 0.49 +0.8
274,876 + MPMX19_06491 0.81 -0.8
274,876 + MPMX19_06491 0.81 +0.4
274,876 + MPMX19_06491 0.81 +0.2
274,877 - MPMX19_06491 0.81 -0.7
274,877 - MPMX19_06491 0.81 -0.7
274,884 + MPMX19_06491 0.82 -0.4
274,885 - MPMX19_06491 0.82 -0.2
274,885 - MPMX19_06491 0.82 -0.8
274,900 + MPMX19_06491 0.83 -1.0
274,900 + MPMX19_06491 0.83 +0.1
274,950 + MPMX19_06491 0.89 +0.0
274,950 + MPMX19_06491 0.89 +0.1
274,950 + MPMX19_06491 0.89 -1.0
274,950 + MPMX19_06491 0.89 +0.1
274,950 + MPMX19_06491 0.89 -1.8
274,951 - MPMX19_06491 0.89 +1.2
274,951 - MPMX19_06491 0.89 +0.5
274,951 - MPMX19_06491 0.89 +0.4
274,951 - MPMX19_06491 0.89 +0.2
274,982 - -1.5
275,001 + +0.1
275,001 + -0.1
275,001 + -0.1
275,001 + -0.3
275,001 + -1.7
275,001 + +1.4
275,002 - -1.5
275,036 - +0.8
275,072 - +0.1
275,103 - +0.3
275,184 + -0.7
275,184 + -0.1
275,306 + -1.8
275,306 + -1.8
275,306 + -1.2
275,306 + -1.5
275,307 - +0.4
275,307 - +0.4
275,307 - -0.8
275,307 - -1.8
275,307 - -1.1
275,307 - -0.8
275,307 - -0.6
275,412 - MPMX19_06492 0.14 +0.1
275,480 + MPMX19_06492 0.20 +0.4
275,480 + MPMX19_06492 0.20 -0.2
275,480 + MPMX19_06492 0.20 -0.2
275,480 + MPMX19_06492 0.20 -0.4
275,480 + MPMX19_06492 0.20 +0.2
275,480 + MPMX19_06492 0.20 +0.0
275,523 - MPMX19_06492 0.24 -1.9
275,523 - MPMX19_06492 0.24 -0.1
275,582 - MPMX19_06492 0.29 +2.7
275,582 - MPMX19_06492 0.29 +1.7
275,865 - MPMX19_06492 0.56 +0.5

Or see this region's nucleotide sequence