Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06469

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06468 and MPMX19_06469 are separated by 30 nucleotidesMPMX19_06469 and MPMX19_06470 are separated by 37 nucleotidesMPMX19_06470 and MPMX19_06471 are separated by 155 nucleotides MPMX19_06468: MPMX19_06468 - Putative acyl-CoA dehydrogenase YdbM, at 251,771 to 252,973 _06468 MPMX19_06469: MPMX19_06469 - hypothetical protein, at 253,004 to 254,002 _06469 MPMX19_06470: MPMX19_06470 - 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase, at 254,040 to 254,825 _06470 MPMX19_06471: MPMX19_06471 - Glyoxylate/hydroxypyruvate reductase A, at 254,981 to 255,811 _06471 Position (kb) 253 254 255Strain fitness (log2 ratio) -2 -1 0 1 2at 252.328 kb on + strand, within MPMX19_06468at 252.329 kb on - strand, within MPMX19_06468at 252.329 kb on - strand, within MPMX19_06468at 252.580 kb on + strand, within MPMX19_06468at 252.580 kb on + strand, within MPMX19_06468at 252.580 kb on + strand, within MPMX19_06468at 252.581 kb on - strand, within MPMX19_06468at 252.581 kb on - strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.675 kb on + strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.676 kb on - strand, within MPMX19_06468at 252.856 kb on - strandat 253.061 kb on - strandat 253.061 kb on - strandat 253.061 kb on - strandat 253.061 kb on - strandat 253.092 kb on + strandat 253.092 kb on + strandat 253.093 kb on - strandat 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.203 kb on + strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.204 kb on - strand, within MPMX19_06469at 253.233 kb on + strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.234 kb on - strand, within MPMX19_06469at 253.267 kb on + strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.268 kb on - strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.366 kb on + strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.367 kb on - strand, within MPMX19_06469at 253.393 kb on + strand, within MPMX19_06469at 253.394 kb on - strand, within MPMX19_06469at 253.394 kb on - strand, within MPMX19_06469at 253.394 kb on - strand, within MPMX19_06469at 253.463 kb on + strand, within MPMX19_06469at 253.463 kb on + strand, within MPMX19_06469at 253.463 kb on + strand, within MPMX19_06469at 253.464 kb on - strand, within MPMX19_06469at 253.464 kb on - strand, within MPMX19_06469at 253.464 kb on - strand, within MPMX19_06469at 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.099 kb on - strandat 254.356 kb on + strand, within MPMX19_06470at 254.356 kb on + strand, within MPMX19_06470at 254.356 kb on + strand, within MPMX19_06470at 254.357 kb on - strand, within MPMX19_06470at 254.383 kb on + strand, within MPMX19_06470at 254.383 kb on + strand, within MPMX19_06470at 254.383 kb on + strand, within MPMX19_06470at 254.384 kb on - strand, within MPMX19_06470at 254.384 kb on - strand, within MPMX19_06470at 254.384 kb on - strand, within MPMX19_06470at 254.450 kb on - strand, within MPMX19_06470at 254.450 kb on - strand, within MPMX19_06470at 254.857 kb on + strandat 254.906 kb on - strandat 254.906 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
252,328 + MPMX19_06468 0.46 +0.3
252,329 - MPMX19_06468 0.46 -0.6
252,329 - MPMX19_06468 0.46 -2.0
252,580 + MPMX19_06468 0.67 +0.8
252,580 + MPMX19_06468 0.67 +0.7
252,580 + MPMX19_06468 0.67 -0.6
252,581 - MPMX19_06468 0.67 -0.6
252,581 - MPMX19_06468 0.67 -2.6
252,675 + MPMX19_06468 0.75 +0.7
252,675 + MPMX19_06468 0.75 +0.1
252,675 + MPMX19_06468 0.75 -0.8
252,675 + MPMX19_06468 0.75 -1.7
252,675 + MPMX19_06468 0.75 -0.6
252,675 + MPMX19_06468 0.75 +0.4
252,675 + MPMX19_06468 0.75 -1.2
252,675 + MPMX19_06468 0.75 +0.0
252,675 + MPMX19_06468 0.75 +0.2
252,675 + MPMX19_06468 0.75 +0.7
252,675 + MPMX19_06468 0.75 +0.9
252,676 - MPMX19_06468 0.75 +0.3
252,676 - MPMX19_06468 0.75 +0.8
252,676 - MPMX19_06468 0.75 -0.3
252,676 - MPMX19_06468 0.75 -0.3
252,676 - MPMX19_06468 0.75 +1.8
252,676 - MPMX19_06468 0.75 +0.2
252,676 - MPMX19_06468 0.75 -0.8
252,676 - MPMX19_06468 0.75 -1.3
252,676 - MPMX19_06468 0.75 -0.2
252,676 - MPMX19_06468 0.75 -0.1
252,676 - MPMX19_06468 0.75 -0.4
252,676 - MPMX19_06468 0.75 -1.2
252,676 - MPMX19_06468 0.75 -1.0
252,676 - MPMX19_06468 0.75 -1.1
252,676 - MPMX19_06468 0.75 -1.3
252,676 - MPMX19_06468 0.75 -1.6
252,676 - MPMX19_06468 0.75 -0.2
252,676 - MPMX19_06468 0.75 -0.1
252,676 - MPMX19_06468 0.75 -0.9
252,676 - MPMX19_06468 0.75 -0.6
252,676 - MPMX19_06468 0.75 -0.6
252,676 - MPMX19_06468 0.75 -2.3
252,676 - MPMX19_06468 0.75 -0.9
252,856 - -1.1
253,061 - +1.9
253,061 - +0.9
253,061 - -0.3
253,061 - -0.6
253,092 + -0.6
253,092 + -0.6
253,093 - -0.2
253,203 + MPMX19_06469 0.20 -1.5
253,203 + MPMX19_06469 0.20 -1.3
253,203 + MPMX19_06469 0.20 +1.2
253,203 + MPMX19_06469 0.20 -0.8
253,203 + MPMX19_06469 0.20 -0.5
253,204 - MPMX19_06469 0.20 -0.8
253,204 - MPMX19_06469 0.20 -1.1
253,204 - MPMX19_06469 0.20 +1.2
253,204 - MPMX19_06469 0.20 +0.2
253,233 + MPMX19_06469 0.23 -0.8
253,234 - MPMX19_06469 0.23 +0.2
253,234 - MPMX19_06469 0.23 -0.1
253,234 - MPMX19_06469 0.23 +1.0
253,234 - MPMX19_06469 0.23 +2.0
253,234 - MPMX19_06469 0.23 +0.6
253,234 - MPMX19_06469 0.23 -0.3
253,234 - MPMX19_06469 0.23 -0.8
253,234 - MPMX19_06469 0.23 +0.9
253,267 + MPMX19_06469 0.26 -0.6
253,268 - MPMX19_06469 0.26 -0.5
253,268 - MPMX19_06469 0.26 -0.6
253,268 - MPMX19_06469 0.26 -0.1
253,268 - MPMX19_06469 0.26 -1.6
253,366 + MPMX19_06469 0.36 +0.8
253,366 + MPMX19_06469 0.36 -1.3
253,366 + MPMX19_06469 0.36 -0.9
253,366 + MPMX19_06469 0.36 -1.5
253,367 - MPMX19_06469 0.36 +1.6
253,367 - MPMX19_06469 0.36 -0.4
253,367 - MPMX19_06469 0.36 +0.4
253,367 - MPMX19_06469 0.36 +0.0
253,367 - MPMX19_06469 0.36 -1.8
253,367 - MPMX19_06469 0.36 -0.9
253,393 + MPMX19_06469 0.39 +0.1
253,394 - MPMX19_06469 0.39 +1.2
253,394 - MPMX19_06469 0.39 -0.8
253,394 - MPMX19_06469 0.39 -1.1
253,463 + MPMX19_06469 0.46 -0.6
253,463 + MPMX19_06469 0.46 +0.7
253,463 + MPMX19_06469 0.46 -0.5
253,464 - MPMX19_06469 0.46 -0.9
253,464 - MPMX19_06469 0.46 +1.2
253,464 - MPMX19_06469 0.46 -1.2
254,099 - +1.4
254,099 - -0.3
254,099 - -0.0
254,099 - -1.3
254,099 - -1.5
254,099 - -0.3
254,356 + MPMX19_06470 0.40 -1.8
254,356 + MPMX19_06470 0.40 -0.6
254,356 + MPMX19_06470 0.40 -0.4
254,357 - MPMX19_06470 0.40 -1.1
254,383 + MPMX19_06470 0.44 +0.9
254,383 + MPMX19_06470 0.44 -1.2
254,383 + MPMX19_06470 0.44 +0.1
254,384 - MPMX19_06470 0.44 -0.5
254,384 - MPMX19_06470 0.44 -0.0
254,384 - MPMX19_06470 0.44 +0.9
254,450 - MPMX19_06470 0.52 -0.2
254,450 - MPMX19_06470 0.52 +0.2
254,857 + +1.1
254,906 - +0.2
254,906 - -1.0

Or see this region's nucleotide sequence