Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06438

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06436 and MPMX19_06437 are separated by 63 nucleotidesMPMX19_06437 and MPMX19_06438 are separated by 140 nucleotidesMPMX19_06438 and MPMX19_06439 are separated by 163 nucleotides MPMX19_06436: MPMX19_06436 - hypothetical protein, at 209,835 to 211,703 _06436 MPMX19_06437: MPMX19_06437 - DNA-invertase hin, at 211,767 to 212,345 _06437 MPMX19_06438: MPMX19_06438 - DNA-invertase hin, at 212,486 to 213,052 _06438 MPMX19_06439: MPMX19_06439 - hypothetical protein, at 213,216 to 214,691 _06439 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2at 211.541 kb on + strandat 211.541 kb on + strandat 211.541 kb on + strandat 211.541 kb on + strandat 211.541 kb on + strandat 211.541 kb on + strandat 211.541 kb on + strandat 211.541 kb on + strandat 211.541 kb on + strandat 211.541 kb on + strandat 211.542 kb on - strandat 211.542 kb on - strandat 211.542 kb on - strandat 211.542 kb on - strandat 211.542 kb on - strandat 211.542 kb on - strandat 211.542 kb on - strandat 211.542 kb on - strandat 211.542 kb on - strandat 211.542 kb on - strandat 211.542 kb on - strandat 211.543 kb on + strandat 211.543 kb on + strandat 211.543 kb on + strandat 211.544 kb on - strandat 211.544 kb on - strandat 211.629 kb on - strandat 211.629 kb on - strandat 211.629 kb on - strandat 211.645 kb on + strandat 211.646 kb on - strandat 211.667 kb on - strandat 211.758 kb on + strandat 211.758 kb on + strandat 211.758 kb on + strandat 211.758 kb on + strandat 211.758 kb on + strandat 211.759 kb on - strandat 211.759 kb on - strandat 211.785 kb on - strandat 211.785 kb on - strandat 211.785 kb on - strandat 211.785 kb on - strandat 211.882 kb on - strand, within MPMX19_06437at 211.882 kb on - strand, within MPMX19_06437at 212.120 kb on + strand, within MPMX19_06437at 212.121 kb on - strand, within MPMX19_06437at 212.254 kb on + strand, within MPMX19_06437at 212.254 kb on + strand, within MPMX19_06437at 212.254 kb on + strand, within MPMX19_06437at 212.280 kb on + strand, within MPMX19_06437at 212.281 kb on - strand, within MPMX19_06437at 212.332 kb on + strandat 212.333 kb on - strandat 212.333 kb on - strandat 212.442 kb on - strandat 212.442 kb on - strandat 212.442 kb on - strandat 212.442 kb on - strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.465 kb on + strandat 212.466 kb on - strandat 212.466 kb on - strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.483 kb on + strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.484 kb on - strandat 212.556 kb on + strand, within MPMX19_06438at 212.556 kb on + strand, within MPMX19_06438at 212.575 kb on + strand, within MPMX19_06438at 212.575 kb on + strand, within MPMX19_06438at 212.576 kb on - strand, within MPMX19_06438at 212.576 kb on - strand, within MPMX19_06438at 212.755 kb on - strand, within MPMX19_06438at 212.755 kb on - strand, within MPMX19_06438at 212.866 kb on + strand, within MPMX19_06438at 212.866 kb on + strand, within MPMX19_06438at 212.867 kb on - strand, within MPMX19_06438at 212.946 kb on + strand, within MPMX19_06438at 212.946 kb on + strand, within MPMX19_06438at 212.946 kb on + strand, within MPMX19_06438at 212.946 kb on + strand, within MPMX19_06438at 212.946 kb on + strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.947 kb on - strand, within MPMX19_06438at 212.964 kb on - strand, within MPMX19_06438at 213.030 kb on + strandat 213.031 kb on - strandat 213.063 kb on + strandat 213.063 kb on + strandat 213.063 kb on + strandat 213.063 kb on + strandat 213.064 kb on - strandat 213.064 kb on - strandat 213.064 kb on - strandat 213.068 kb on + strandat 213.069 kb on - strandat 213.086 kb on + strandat 213.087 kb on - strandat 213.097 kb on + strandat 213.097 kb on + strandat 213.097 kb on + strandat 213.098 kb on - strandat 213.098 kb on - strandat 213.576 kb on + strand, within MPMX19_06439at 213.576 kb on + strand, within MPMX19_06439at 213.576 kb on + strand, within MPMX19_06439at 213.577 kb on - strand, within MPMX19_06439at 213.577 kb on - strand, within MPMX19_06439at 213.651 kb on + strand, within MPMX19_06439at 213.652 kb on - strand, within MPMX19_06439at 213.652 kb on - strand, within MPMX19_06439at 213.664 kb on - strand, within MPMX19_06439at 213.787 kb on + strand, within MPMX19_06439at 213.788 kb on - strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.933 kb on + strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 213.934 kb on - strand, within MPMX19_06439at 214.008 kb on + strand, within MPMX19_06439

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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211,541 + +0.2
211,541 + +0.1
211,541 + -1.9
211,541 + -0.9
211,541 + +1.2
211,541 + -0.1
211,541 + -2.7
211,541 + +1.5
211,541 + +0.5
211,541 + -0.8
211,542 - +0.2
211,542 - -2.0
211,542 - -1.0
211,542 - -1.6
211,542 - -0.3
211,542 - -1.3
211,542 - -0.8
211,542 - -1.1
211,542 - -0.5
211,542 - -0.9
211,542 - +0.5
211,543 + +0.0
211,543 + -1.5
211,543 + -0.3
211,544 - -0.8
211,544 - +1.1
211,629 - -1.8
211,629 - +1.2
211,629 - -0.9
211,645 + +1.4
211,646 - +0.2
211,667 - -0.6
211,758 + -0.6
211,758 + -0.9
211,758 + -0.3
211,758 + +0.8
211,758 + +0.9
211,759 - -0.3
211,759 - -1.3
211,785 - -1.3
211,785 - +0.2
211,785 - -0.8
211,785 - +0.2
211,882 - MPMX19_06437 0.20 -0.4
211,882 - MPMX19_06437 0.20 +1.1
212,120 + MPMX19_06437 0.61 -1.1
212,121 - MPMX19_06437 0.61 +0.2
212,254 + MPMX19_06437 0.84 +0.2
212,254 + MPMX19_06437 0.84 -0.3
212,254 + MPMX19_06437 0.84 -0.6
212,280 + MPMX19_06437 0.89 -0.5
212,281 - MPMX19_06437 0.89 +0.1
212,332 + -1.8
212,333 - -0.5
212,333 - +0.7
212,442 - -1.8
212,442 - +0.5
212,442 - -0.8
212,442 - +1.2
212,465 + -1.9
212,465 + +1.8
212,465 + -1.5
212,465 + -0.2
212,465 + -0.2
212,465 + +0.8
212,465 + +0.7
212,466 - +0.1
212,466 - -0.1
212,483 + -1.3
212,483 + -1.2
212,483 + -0.8
212,483 + -0.5
212,483 + +0.7
212,483 + -1.2
212,483 + -1.1
212,483 + -0.3
212,484 - +0.2
212,484 - +0.7
212,484 - -1.2
212,484 - -1.3
212,484 - -1.5
212,484 - -0.1
212,484 - -0.3
212,484 - -0.1
212,484 - -1.7
212,484 - -1.1
212,484 - -0.3
212,484 - -0.8
212,484 - -1.4
212,556 + MPMX19_06438 0.12 +2.2
212,556 + MPMX19_06438 0.12 -0.1
212,575 + MPMX19_06438 0.16 -1.2
212,575 + MPMX19_06438 0.16 -1.6
212,576 - MPMX19_06438 0.16 -2.5
212,576 - MPMX19_06438 0.16 +0.4
212,755 - MPMX19_06438 0.47 -0.9
212,755 - MPMX19_06438 0.47 +0.9
212,866 + MPMX19_06438 0.67 -1.8
212,866 + MPMX19_06438 0.67 -1.7
212,867 - MPMX19_06438 0.67 -1.5
212,946 + MPMX19_06438 0.81 -0.5
212,946 + MPMX19_06438 0.81 -1.0
212,946 + MPMX19_06438 0.81 -0.1
212,946 + MPMX19_06438 0.81 -0.2
212,946 + MPMX19_06438 0.81 +0.4
212,947 - MPMX19_06438 0.81 -2.0
212,947 - MPMX19_06438 0.81 -0.1
212,947 - MPMX19_06438 0.81 -1.9
212,947 - MPMX19_06438 0.81 -1.1
212,947 - MPMX19_06438 0.81 -0.8
212,947 - MPMX19_06438 0.81 -1.2
212,964 - MPMX19_06438 0.84 -0.5
213,030 + -0.3
213,031 - -1.5
213,063 + -1.1
213,063 + +1.0
213,063 + -0.1
213,063 + -0.8
213,064 - -0.2
213,064 - -2.1
213,064 - +2.6
213,068 + -0.6
213,069 - +0.7
213,086 + -1.2
213,087 - -0.3
213,097 + -0.5
213,097 + -0.9
213,097 + +0.4
213,098 - +1.9
213,098 - -0.5
213,576 + MPMX19_06439 0.24 +1.4
213,576 + MPMX19_06439 0.24 +0.1
213,576 + MPMX19_06439 0.24 +0.4
213,577 - MPMX19_06439 0.24 -0.9
213,577 - MPMX19_06439 0.24 -0.9
213,651 + MPMX19_06439 0.29 -0.1
213,652 - MPMX19_06439 0.30 -0.1
213,652 - MPMX19_06439 0.30 +0.2
213,664 - MPMX19_06439 0.30 +0.2
213,787 + MPMX19_06439 0.39 -1.0
213,788 - MPMX19_06439 0.39 -0.3
213,933 + MPMX19_06439 0.49 -0.8
213,933 + MPMX19_06439 0.49 -0.9
213,933 + MPMX19_06439 0.49 +1.2
213,933 + MPMX19_06439 0.49 +0.1
213,933 + MPMX19_06439 0.49 -0.2
213,933 + MPMX19_06439 0.49 -0.4
213,933 + MPMX19_06439 0.49 +0.7
213,933 + MPMX19_06439 0.49 +0.8
213,933 + MPMX19_06439 0.49 -0.9
213,933 + MPMX19_06439 0.49 -1.8
213,933 + MPMX19_06439 0.49 -0.6
213,934 - MPMX19_06439 0.49 -0.8
213,934 - MPMX19_06439 0.49 +0.7
213,934 - MPMX19_06439 0.49 -0.1
213,934 - MPMX19_06439 0.49 -0.1
213,934 - MPMX19_06439 0.49 -2.0
213,934 - MPMX19_06439 0.49 -1.6
214,008 + MPMX19_06439 0.54 +0.1

Or see this region's nucleotide sequence