Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06427 and MPMX19_06428 are separated by 544 nucleotides MPMX19_06428 and MPMX19_06429 are separated by 103 nucleotides MPMX19_06429 and MPMX19_06430 are separated by 10 nucleotides
MPMX19_06427: MPMX19_06427 - hypothetical protein, at 199,245 to 200,249
_06427
MPMX19_06428: MPMX19_06428 - hypothetical protein, at 200,794 to 201,204
_06428
MPMX19_06429: MPMX19_06429 - HTH-type transcriptional regulator HmrR, at 201,308 to 201,751
_06429
MPMX19_06430: MPMX19_06430 - Copper-exporting P-type ATPase, at 201,762 to 204,200
_06430
Position (kb) 200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.858 kb on + strand, within MPMX19_06427 at 199.858 kb on + strand, within MPMX19_06427 at 199.858 kb on + strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.044 kb on - strand, within MPMX19_06427 at 200.044 kb on - strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.095 kb on - strand, within MPMX19_06427 at 200.095 kb on - strand, within MPMX19_06427 at 200.095 kb on - strand, within MPMX19_06427 at 200.177 kb on - strand at 200.247 kb on + strand at 200.248 kb on - strand at 200.248 kb on - strand at 200.574 kb on - strand at 200.795 kb on + strand at 200.796 kb on - strand at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.246 kb on + strand at 201.246 kb on + strand at 201.246 kb on + strand at 201.256 kb on + strand at 201.256 kb on + strand at 201.257 kb on - strand at 201.257 kb on - strand at 201.637 kb on - strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.696 kb on + strand, within MPMX19_06429 at 201.697 kb on - strand, within MPMX19_06429 at 201.730 kb on + strand at 201.730 kb on + strand at 201.730 kb on + strand at 201.730 kb on + strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.794 kb on + strand at 201.794 kb on + strand at 201.795 kb on - strand at 201.795 kb on - strand at 201.862 kb on + strand at 201.898 kb on + strand at 201.898 kb on + strand at 201.937 kb on + strand at 201.937 kb on + strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.983 kb on + strand at 201.983 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 199,838 + MPMX19_06427 0.59 -0.7 199,838 + MPMX19_06427 0.59 -0.5 199,838 + MPMX19_06427 0.59 +0.4 199,838 + MPMX19_06427 0.59 +0.3 199,838 + MPMX19_06427 0.59 -1.4 199,838 + MPMX19_06427 0.59 -0.6 199,838 + MPMX19_06427 0.59 -0.1 199,839 - MPMX19_06427 0.59 -0.8 199,839 - MPMX19_06427 0.59 -1.9 199,839 - MPMX19_06427 0.59 +1.2 199,839 - MPMX19_06427 0.59 -0.3 199,839 - MPMX19_06427 0.59 +0.0 199,839 - MPMX19_06427 0.59 +0.7 199,839 - MPMX19_06427 0.59 -0.9 199,839 - MPMX19_06427 0.59 -0.3 199,839 - MPMX19_06427 0.59 -2.2 199,858 + MPMX19_06427 0.61 -0.0 199,858 + MPMX19_06427 0.61 +1.6 199,858 + MPMX19_06427 0.61 -0.9 199,859 - MPMX19_06427 0.61 +0.7 199,859 - MPMX19_06427 0.61 -1.3 199,859 - MPMX19_06427 0.61 -0.7 199,859 - MPMX19_06427 0.61 -1.1 199,859 - MPMX19_06427 0.61 +0.0 200,043 + MPMX19_06427 0.79 +0.2 200,043 + MPMX19_06427 0.79 -1.8 200,043 + MPMX19_06427 0.79 +0.1 200,043 + MPMX19_06427 0.79 -1.8 200,043 + MPMX19_06427 0.79 -2.1 200,043 + MPMX19_06427 0.79 -0.9 200,044 - MPMX19_06427 0.80 -0.2 200,044 - MPMX19_06427 0.80 +1.8 200,094 + MPMX19_06427 0.84 +1.2 200,094 + MPMX19_06427 0.84 +0.5 200,094 + MPMX19_06427 0.84 -1.2 200,094 + MPMX19_06427 0.84 +1.2 200,094 + MPMX19_06427 0.84 -0.6 200,094 + MPMX19_06427 0.84 -2.1 200,095 - MPMX19_06427 0.85 -0.2 200,095 - MPMX19_06427 0.85 -0.6 200,095 - MPMX19_06427 0.85 -0.6 200,177 - +0.2 200,247 + -0.2 200,248 - -1.7 200,248 - -2.0 200,574 - +0.1 200,795 + +0.1 200,796 - -0.3 201,027 + MPMX19_06428 0.57 +1.2 201,027 + MPMX19_06428 0.57 +0.5 201,027 + MPMX19_06428 0.57 -0.3 201,027 + MPMX19_06428 0.57 -0.7 201,027 + MPMX19_06428 0.57 -1.2 201,027 + MPMX19_06428 0.57 -1.2 201,027 + MPMX19_06428 0.57 -2.3 201,027 + MPMX19_06428 0.57 -0.6 201,027 + MPMX19_06428 0.57 -0.2 201,027 + MPMX19_06428 0.57 -2.2 201,027 + MPMX19_06428 0.57 -0.3 201,027 + MPMX19_06428 0.57 -0.1 201,027 + MPMX19_06428 0.57 -0.8 201,028 - MPMX19_06428 0.57 -0.9 201,028 - MPMX19_06428 0.57 -0.6 201,028 - MPMX19_06428 0.57 -0.3 201,028 - MPMX19_06428 0.57 -0.8 201,028 - MPMX19_06428 0.57 +0.1 201,047 + MPMX19_06428 0.62 -0.5 201,047 + MPMX19_06428 0.62 -0.3 201,047 + MPMX19_06428 0.62 -0.8 201,047 + MPMX19_06428 0.62 -0.5 201,048 - MPMX19_06428 0.62 -1.6 201,048 - MPMX19_06428 0.62 +0.9 201,048 - MPMX19_06428 0.62 +1.2 201,048 - MPMX19_06428 0.62 -0.8 201,048 - MPMX19_06428 0.62 -1.0 201,246 + -1.3 201,246 + -0.4 201,246 + -2.3 201,256 + -1.0 201,256 + -0.6 201,257 - -0.1 201,257 - -0.3 201,637 - MPMX19_06429 0.74 +0.5 201,693 + MPMX19_06429 0.87 -0.5 201,693 + MPMX19_06429 0.87 -1.0 201,693 + MPMX19_06429 0.87 +1.5 201,693 + MPMX19_06429 0.87 -1.3 201,693 + MPMX19_06429 0.87 +0.5 201,693 + MPMX19_06429 0.87 +0.7 201,693 + MPMX19_06429 0.87 -1.6 201,693 + MPMX19_06429 0.87 +0.2 201,694 - MPMX19_06429 0.87 -0.9 201,694 - MPMX19_06429 0.87 -0.6 201,694 - MPMX19_06429 0.87 -0.1 201,694 - MPMX19_06429 0.87 +0.0 201,696 + MPMX19_06429 0.87 +0.5 201,697 - MPMX19_06429 0.88 -1.2 201,730 + -1.3 201,730 + +0.2 201,730 + -0.4 201,730 + -0.3 201,731 - -0.6 201,731 - +0.5 201,731 - -2.1 201,731 - +0.1 201,731 - -1.1 201,731 - -1.8 201,731 - -0.9 201,794 + +0.2 201,794 + -0.9 201,795 - -0.7 201,795 - +0.1 201,862 + -1.1 201,898 + -0.1 201,898 + +0.7 201,937 + +0.1 201,937 + -0.6 201,938 - -0.8 201,938 - -0.6 201,938 - -0.2 201,938 - -0.3 201,938 - -1.6 201,983 + +0.5 201,983 + -0.8
Or see this region's nucleotide sequence