Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06414 and MPMX19_06415 are separated by 10 nucleotides
MPMX19_06414: MPMX19_06414 - hypothetical protein, at 183,890 to 184,456
_06414
MPMX19_06415: MPMX19_06415 - Copper resistance protein A, at 184,467 to 186,341
_06415
Position (kb) 183
184
185 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 182.959 kb on - strand at 183.084 kb on + strand at 183.084 kb on + strand at 183.085 kb on - strand at 183.085 kb on - strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.132 kb on + strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.133 kb on - strand at 183.160 kb on + strand at 183.160 kb on + strand at 183.206 kb on + strand at 183.206 kb on + strand at 183.207 kb on - strand at 183.207 kb on - strand at 183.207 kb on - strand at 183.300 kb on + strand at 183.301 kb on - strand at 183.301 kb on - strand at 183.457 kb on - strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.458 kb on + strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.459 kb on - strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.548 kb on + strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.549 kb on - strand at 183.560 kb on + strand at 183.561 kb on - strand at 183.699 kb on + strand at 183.700 kb on - strand at 183.700 kb on - strand at 183.700 kb on - strand at 183.877 kb on + strand at 183.877 kb on + strand at 183.877 kb on + strand at 183.878 kb on - strand at 183.878 kb on - strand at 183.886 kb on + strand at 183.886 kb on + strand at 183.886 kb on + strand at 183.886 kb on + strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.887 kb on - strand at 183.888 kb on + strand at 183.888 kb on + strand at 183.888 kb on + strand at 183.889 kb on - strand at 183.889 kb on - strand at 183.889 kb on - strand at 183.889 kb on - strand at 183.889 kb on - strand at 183.908 kb on - strand at 184.051 kb on + strand, within MPMX19_06414 at 184.051 kb on + strand, within MPMX19_06414 at 184.052 kb on - strand, within MPMX19_06414 at 184.079 kb on + strand, within MPMX19_06414 at 184.079 kb on + strand, within MPMX19_06414 at 184.079 kb on + strand, within MPMX19_06414 at 184.079 kb on + strand, within MPMX19_06414 at 184.080 kb on - strand, within MPMX19_06414 at 184.080 kb on - strand, within MPMX19_06414 at 184.082 kb on + strand, within MPMX19_06414 at 184.082 kb on + strand, within MPMX19_06414 at 184.082 kb on + strand, within MPMX19_06414 at 184.083 kb on - strand, within MPMX19_06414 at 184.083 kb on - strand, within MPMX19_06414 at 184.083 kb on - strand, within MPMX19_06414 at 184.415 kb on + strand at 184.415 kb on + strand at 184.415 kb on + strand at 184.415 kb on + strand at 184.416 kb on - strand at 184.416 kb on - strand at 184.416 kb on - strand at 184.416 kb on - strand at 184.416 kb on - strand at 184.416 kb on - strand at 184.551 kb on + strand at 184.551 kb on + strand at 184.652 kb on + strand at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.833 kb on + strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.834 kb on - strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.839 kb on + strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.840 kb on - strand, within MPMX19_06415 at 184.869 kb on + strand, within MPMX19_06415 at 184.869 kb on + strand, within MPMX19_06415 at 184.869 kb on + strand, within MPMX19_06415 at 184.869 kb on + strand, within MPMX19_06415 at 184.875 kb on + strand, within MPMX19_06415 at 184.875 kb on + strand, within MPMX19_06415 at 184.875 kb on + strand, within MPMX19_06415 at 184.876 kb on - strand, within MPMX19_06415 at 184.914 kb on + strand, within MPMX19_06415 at 184.914 kb on + strand, within MPMX19_06415 at 184.914 kb on + strand, within MPMX19_06415 at 184.914 kb on + strand, within MPMX19_06415 at 184.914 kb on + strand, within MPMX19_06415 at 184.915 kb on - strand, within MPMX19_06415 at 184.915 kb on - strand, within MPMX19_06415 at 184.915 kb on - strand, within MPMX19_06415 at 184.915 kb on - strand, within MPMX19_06415 at 184.915 kb on - strand, within MPMX19_06415 at 184.971 kb on + strand, within MPMX19_06415 at 184.971 kb on + strand, within MPMX19_06415 at 184.971 kb on + strand, within MPMX19_06415 at 184.972 kb on - strand, within MPMX19_06415 at 184.972 kb on - strand, within MPMX19_06415 at 184.972 kb on - strand, within MPMX19_06415 at 184.972 kb on - strand, within MPMX19_06415 at 185.046 kb on + strand, within MPMX19_06415 at 185.047 kb on - strand, within MPMX19_06415 at 185.047 kb on - strand, within MPMX19_06415 at 185.049 kb on + strand, within MPMX19_06415 at 185.049 kb on + strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.050 kb on - strand, within MPMX19_06415 at 185.057 kb on + strand, within MPMX19_06415 at 185.058 kb on - strand, within MPMX19_06415 at 185.235 kb on + strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.236 kb on - strand, within MPMX19_06415 at 185.318 kb on + strand, within MPMX19_06415 at 185.318 kb on + strand, within MPMX19_06415 at 185.318 kb on + strand, within MPMX19_06415 at 185.318 kb on + strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.319 kb on - strand, within MPMX19_06415 at 185.397 kb on + strand, within MPMX19_06415 at 185.397 kb on + strand, within MPMX19_06415 at 185.397 kb on + strand, within MPMX19_06415 at 185.397 kb on + strand, within MPMX19_06415 at 185.398 kb on - strand, within MPMX19_06415 at 185.398 kb on - strand, within MPMX19_06415 at 185.398 kb on - strand, within MPMX19_06415 at 185.398 kb on - strand, within MPMX19_06415 at 185.398 kb on - strand, within MPMX19_06415
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 182,959 - -0.1 183,084 + -1.6 183,084 + -0.8 183,085 - -1.6 183,085 - -0.6 183,132 + -0.3 183,132 + +0.6 183,132 + -0.3 183,132 + +2.2 183,132 + +0.3 183,132 + -0.9 183,132 + -1.3 183,132 + -0.3 183,132 + -0.1 183,132 + -0.5 183,132 + +0.2 183,132 + -0.7 183,132 + -0.2 183,133 - -0.1 183,133 - -0.1 183,133 - -0.6 183,133 - -1.1 183,133 - +0.1 183,133 - -1.6 183,133 - -0.5 183,133 - -0.8 183,133 - -0.5 183,133 - -0.8 183,133 - -0.8 183,160 + -0.8 183,160 + -0.8 183,206 + +0.9 183,206 + +0.4 183,207 - +2.7 183,207 - +0.7 183,207 - -0.5 183,300 + -0.1 183,301 - +1.0 183,301 - -3.8 183,457 - -1.1 183,458 + -1.6 183,458 + +0.7 183,458 + +0.2 183,458 + +0.6 183,458 + -1.2 183,458 + -0.6 183,458 + +1.2 183,459 - +0.1 183,459 - -1.0 183,459 - -0.6 183,459 - -1.2 183,459 - +2.2 183,459 - -0.5 183,459 - -0.9 183,459 - +0.7 183,548 + +0.2 183,548 + +0.6 183,548 + -1.1 183,548 + +0.2 183,548 + +0.3 183,548 + -1.5 183,548 + +0.3 183,548 + -0.7 183,549 - +0.7 183,549 - +0.2 183,549 - -0.9 183,549 - +0.7 183,549 - -1.4 183,549 - +1.0 183,549 - -1.2 183,549 - -0.6 183,549 - +0.3 183,549 - +2.0 183,549 - -0.4 183,549 - -0.1 183,549 - +2.6 183,560 + +1.5 183,561 - -1.6 183,699 + -0.2 183,700 - -1.1 183,700 - -0.8 183,700 - -0.2 183,877 + -1.7 183,877 + -0.6 183,877 + -0.7 183,878 - +0.1 183,878 - -1.5 183,886 + -0.2 183,886 + +0.9 183,886 + +0.1 183,886 + -1.2 183,887 - +1.2 183,887 - -1.1 183,887 - -0.4 183,887 - -0.3 183,887 - -0.3 183,887 - -0.3 183,887 - +1.5 183,887 - -0.1 183,888 + -0.6 183,888 + +0.7 183,888 + -0.3 183,889 - +0.7 183,889 - -0.0 183,889 - -0.9 183,889 - -1.7 183,889 - -0.7 183,908 - -1.3 184,051 + MPMX19_06414 0.28 +1.8 184,051 + MPMX19_06414 0.28 -1.1 184,052 - MPMX19_06414 0.29 -0.8 184,079 + MPMX19_06414 0.33 +1.4 184,079 + MPMX19_06414 0.33 -2.0 184,079 + MPMX19_06414 0.33 -0.8 184,079 + MPMX19_06414 0.33 -0.8 184,080 - MPMX19_06414 0.34 -2.0 184,080 - MPMX19_06414 0.34 -0.1 184,082 + MPMX19_06414 0.34 -0.8 184,082 + MPMX19_06414 0.34 -0.5 184,082 + MPMX19_06414 0.34 -0.5 184,083 - MPMX19_06414 0.34 -2.5 184,083 - MPMX19_06414 0.34 -1.0 184,083 - MPMX19_06414 0.34 -0.7 184,415 + -0.3 184,415 + -2.7 184,415 + +0.1 184,415 + +0.4 184,416 - -0.6 184,416 - -0.9 184,416 - -0.6 184,416 - -1.8 184,416 - -0.8 184,416 - -2.6 184,551 + -0.3 184,551 + -0.3 184,652 + -0.3 184,833 + MPMX19_06415 0.20 +0.2 184,833 + MPMX19_06415 0.20 +0.8 184,833 + MPMX19_06415 0.20 -2.0 184,833 + MPMX19_06415 0.20 -1.6 184,833 + MPMX19_06415 0.20 -0.7 184,833 + MPMX19_06415 0.20 -0.3 184,833 + MPMX19_06415 0.20 +1.2 184,833 + MPMX19_06415 0.20 +0.8 184,834 - MPMX19_06415 0.20 -1.2 184,834 - MPMX19_06415 0.20 +2.8 184,834 - MPMX19_06415 0.20 +0.7 184,834 - MPMX19_06415 0.20 -2.5 184,834 - MPMX19_06415 0.20 -1.3 184,834 - MPMX19_06415 0.20 -0.9 184,834 - MPMX19_06415 0.20 -0.5 184,834 - MPMX19_06415 0.20 +0.2 184,839 + MPMX19_06415 0.20 -2.3 184,839 + MPMX19_06415 0.20 -0.1 184,839 + MPMX19_06415 0.20 -1.3 184,839 + MPMX19_06415 0.20 -1.2 184,839 + MPMX19_06415 0.20 -1.2 184,839 + MPMX19_06415 0.20 +0.5 184,839 + MPMX19_06415 0.20 +0.2 184,840 - MPMX19_06415 0.20 -0.2 184,840 - MPMX19_06415 0.20 -1.1 184,840 - MPMX19_06415 0.20 -1.1 184,840 - MPMX19_06415 0.20 -0.9 184,840 - MPMX19_06415 0.20 -1.4 184,840 - MPMX19_06415 0.20 -0.4 184,840 - MPMX19_06415 0.20 -1.8 184,840 - MPMX19_06415 0.20 -0.8 184,840 - MPMX19_06415 0.20 +0.7 184,869 + MPMX19_06415 0.21 -0.2 184,869 + MPMX19_06415 0.21 +0.7 184,869 + MPMX19_06415 0.21 -1.2 184,869 + MPMX19_06415 0.21 -1.0 184,875 + MPMX19_06415 0.22 -0.2 184,875 + MPMX19_06415 0.22 -1.5 184,875 + MPMX19_06415 0.22 -0.8 184,876 - MPMX19_06415 0.22 -0.8 184,914 + MPMX19_06415 0.24 -0.9 184,914 + MPMX19_06415 0.24 +1.2 184,914 + MPMX19_06415 0.24 +0.9 184,914 + MPMX19_06415 0.24 +0.8 184,914 + MPMX19_06415 0.24 +0.1 184,915 - MPMX19_06415 0.24 -1.7 184,915 - MPMX19_06415 0.24 -1.0 184,915 - MPMX19_06415 0.24 +0.3 184,915 - MPMX19_06415 0.24 +1.2 184,915 - MPMX19_06415 0.24 -0.3 184,971 + MPMX19_06415 0.27 -0.3 184,971 + MPMX19_06415 0.27 -0.9 184,971 + MPMX19_06415 0.27 +0.9 184,972 - MPMX19_06415 0.27 -0.1 184,972 - MPMX19_06415 0.27 -0.1 184,972 - MPMX19_06415 0.27 -2.1 184,972 - MPMX19_06415 0.27 -0.1 185,046 + MPMX19_06415 0.31 +0.1 185,047 - MPMX19_06415 0.31 -0.5 185,047 - MPMX19_06415 0.31 +0.4 185,049 + MPMX19_06415 0.31 -0.1 185,049 + MPMX19_06415 0.31 -2.0 185,050 - MPMX19_06415 0.31 +0.3 185,050 - MPMX19_06415 0.31 +1.1 185,050 - MPMX19_06415 0.31 -1.5 185,050 - MPMX19_06415 0.31 -0.8 185,050 - MPMX19_06415 0.31 -0.3 185,050 - MPMX19_06415 0.31 -1.8 185,050 - MPMX19_06415 0.31 -1.3 185,057 + MPMX19_06415 0.31 -0.8 185,058 - MPMX19_06415 0.32 -0.3 185,235 + MPMX19_06415 0.41 -0.9 185,236 - MPMX19_06415 0.41 +0.7 185,236 - MPMX19_06415 0.41 -1.0 185,236 - MPMX19_06415 0.41 -0.6 185,236 - MPMX19_06415 0.41 -0.7 185,236 - MPMX19_06415 0.41 +0.7 185,236 - MPMX19_06415 0.41 -2.1 185,318 + MPMX19_06415 0.45 -1.0 185,318 + MPMX19_06415 0.45 +0.7 185,318 + MPMX19_06415 0.45 +0.9 185,318 + MPMX19_06415 0.45 +1.9 185,319 - MPMX19_06415 0.45 -0.2 185,319 - MPMX19_06415 0.45 +1.1 185,319 - MPMX19_06415 0.45 -0.8 185,319 - MPMX19_06415 0.45 -0.1 185,319 - MPMX19_06415 0.45 -1.8 185,319 - MPMX19_06415 0.45 -1.2 185,397 + MPMX19_06415 0.50 +0.3 185,397 + MPMX19_06415 0.50 -0.8 185,397 + MPMX19_06415 0.50 -1.3 185,397 + MPMX19_06415 0.50 -1.7 185,398 - MPMX19_06415 0.50 -0.5 185,398 - MPMX19_06415 0.50 +2.0 185,398 - MPMX19_06415 0.50 +0.1 185,398 - MPMX19_06415 0.50 +1.0 185,398 - MPMX19_06415 0.50 +1.2
Or see this region's nucleotide sequence