Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06411 and MPMX19_06412 overlap by 4 nucleotides MPMX19_06412 and MPMX19_06413 are separated by 641 nucleotides
MPMX19_06411: MPMX19_06411 - Adaptive-response sensory-kinase SasA, at 178,563 to 179,909
_06411
MPMX19_06412: MPMX19_06412 - Transcriptional regulatory protein OmpR, at 179,906 to 180,505
_06412
MPMX19_06413: MPMX19_06413 - hypothetical protein, at 181,147 to 182,631
_06413
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 178.924 kb on + strand, within MPMX19_06411 at 178.924 kb on + strand, within MPMX19_06411 at 178.924 kb on + strand, within MPMX19_06411 at 178.925 kb on - strand, within MPMX19_06411 at 178.925 kb on - strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.929 kb on + strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 178.930 kb on - strand, within MPMX19_06411 at 179.046 kb on + strand, within MPMX19_06411 at 179.199 kb on - strand, within MPMX19_06411 at 179.199 kb on - strand, within MPMX19_06411 at 179.419 kb on - strand, within MPMX19_06411 at 179.419 kb on - strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.524 kb on + strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.525 kb on - strand, within MPMX19_06411 at 179.529 kb on + strand, within MPMX19_06411 at 179.529 kb on + strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.530 kb on - strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.622 kb on + strand, within MPMX19_06411 at 179.623 kb on - strand, within MPMX19_06411 at 179.623 kb on - strand, within MPMX19_06411 at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.804 kb on + strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.805 kb on - strand at 179.868 kb on - strand at 179.868 kb on - strand at 179.868 kb on - strand at 179.890 kb on - strand at 179.937 kb on + strand at 179.937 kb on + strand at 179.938 kb on - strand at 179.938 kb on - strand at 179.938 kb on - strand at 179.959 kb on + strand at 179.960 kb on - strand at 179.960 kb on - strand at 179.960 kb on - strand at 180.036 kb on + strand, within MPMX19_06412 at 180.036 kb on + strand, within MPMX19_06412 at 180.037 kb on - strand, within MPMX19_06412 at 180.037 kb on - strand, within MPMX19_06412 at 180.126 kb on + strand, within MPMX19_06412 at 180.126 kb on + strand, within MPMX19_06412 at 180.127 kb on - strand, within MPMX19_06412 at 180.127 kb on - strand, within MPMX19_06412 at 180.212 kb on + strand, within MPMX19_06412 at 180.213 kb on - strand, within MPMX19_06412 at 180.213 kb on - strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.318 kb on + strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.319 kb on - strand, within MPMX19_06412 at 180.353 kb on - strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.439 kb on + strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.440 kb on - strand, within MPMX19_06412 at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.458 kb on + strand at 180.459 kb on - strand at 180.459 kb on - strand at 180.476 kb on + strand at 180.476 kb on + strand at 180.476 kb on + strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.477 kb on - strand at 180.493 kb on + strand at 180.493 kb on + strand at 180.494 kb on - strand at 180.520 kb on + strand at 180.521 kb on - strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.613 kb on + strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.614 kb on - strand at 180.631 kb on + strand at 180.632 kb on - strand at 180.661 kb on + strand at 180.661 kb on + strand at 180.662 kb on - strand at 180.662 kb on - strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.781 kb on + strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.782 kb on - strand at 180.808 kb on + strand at 180.809 kb on - strand at 180.896 kb on + strand at 180.971 kb on + strand at 180.980 kb on + strand at 180.980 kb on + strand at 180.981 kb on - strand at 181.008 kb on + strand at 181.084 kb on + strand at 181.084 kb on + strand at 181.084 kb on + strand at 181.085 kb on - strand at 181.085 kb on - strand at 181.085 kb on - strand at 181.132 kb on - strand at 181.132 kb on - strand at 181.160 kb on + strand at 181.160 kb on + strand at 181.161 kb on - strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.189 kb on + strand at 181.190 kb on - strand at 181.190 kb on - strand at 181.190 kb on - strand at 181.190 kb on - strand at 181.302 kb on + strand, within MPMX19_06413 at 181.302 kb on + strand, within MPMX19_06413 at 181.302 kb on + strand, within MPMX19_06413 at 181.303 kb on - strand, within MPMX19_06413 at 181.303 kb on - strand, within MPMX19_06413 at 181.303 kb on - strand, within MPMX19_06413 at 181.311 kb on + strand, within MPMX19_06413 at 181.311 kb on + strand, within MPMX19_06413 at 181.311 kb on + strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.312 kb on - strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.471 kb on + strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.472 kb on - strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.478 kb on + strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.479 kb on - strand, within MPMX19_06413 at 181.501 kb on + strand, within MPMX19_06413 at 181.501 kb on + strand, within MPMX19_06413 at 181.501 kb on + strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413 at 181.502 kb on - strand, within MPMX19_06413
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 178,924 + MPMX19_06411 0.27 -0.8 178,924 + MPMX19_06411 0.27 -0.9 178,924 + MPMX19_06411 0.27 -2.5 178,925 - MPMX19_06411 0.27 -0.6 178,925 - MPMX19_06411 0.27 -0.3 178,929 + MPMX19_06411 0.27 -1.6 178,929 + MPMX19_06411 0.27 +0.1 178,929 + MPMX19_06411 0.27 -0.9 178,929 + MPMX19_06411 0.27 +0.7 178,929 + MPMX19_06411 0.27 +1.2 178,929 + MPMX19_06411 0.27 -0.7 178,930 - MPMX19_06411 0.27 +1.2 178,930 - MPMX19_06411 0.27 -1.1 178,930 - MPMX19_06411 0.27 -0.2 179,046 + MPMX19_06411 0.36 +1.2 179,199 - MPMX19_06411 0.47 -0.9 179,199 - MPMX19_06411 0.47 +0.4 179,419 - MPMX19_06411 0.64 +0.1 179,419 - MPMX19_06411 0.64 +0.5 179,524 + MPMX19_06411 0.71 +0.7 179,524 + MPMX19_06411 0.71 -1.2 179,524 + MPMX19_06411 0.71 +0.8 179,524 + MPMX19_06411 0.71 -0.3 179,524 + MPMX19_06411 0.71 -1.5 179,524 + MPMX19_06411 0.71 -0.3 179,524 + MPMX19_06411 0.71 -1.5 179,524 + MPMX19_06411 0.71 +0.7 179,525 - MPMX19_06411 0.71 -0.6 179,525 - MPMX19_06411 0.71 -0.1 179,525 - MPMX19_06411 0.71 -0.2 179,525 - MPMX19_06411 0.71 +0.5 179,525 - MPMX19_06411 0.71 +0.3 179,525 - MPMX19_06411 0.71 -0.7 179,529 + MPMX19_06411 0.72 +0.4 179,529 + MPMX19_06411 0.72 -0.3 179,530 - MPMX19_06411 0.72 +0.7 179,530 - MPMX19_06411 0.72 +0.4 179,530 - MPMX19_06411 0.72 -1.2 179,622 + MPMX19_06411 0.79 -1.8 179,622 + MPMX19_06411 0.79 +1.5 179,622 + MPMX19_06411 0.79 +0.4 179,623 - MPMX19_06411 0.79 -0.1 179,623 - MPMX19_06411 0.79 -1.3 179,804 + -0.3 179,804 + -1.1 179,804 + +0.2 179,804 + -0.4 179,804 + -1.3 179,804 + +0.5 179,804 + +1.8 179,804 + +0.5 179,804 + -1.8 179,804 + -0.3 179,804 + +0.7 179,804 + -0.1 179,804 + -0.3 179,805 - -1.2 179,805 - -0.1 179,805 - +0.2 179,805 - -1.5 179,805 - -0.0 179,805 - -0.8 179,805 - -0.3 179,805 - -1.6 179,805 - -1.3 179,805 - -1.2 179,805 - -0.6 179,805 - -0.5 179,805 - -0.5 179,805 - -0.3 179,805 - -1.2 179,868 - -0.4 179,868 - -0.8 179,868 - -0.9 179,890 - +1.1 179,937 + +0.8 179,937 + +0.4 179,938 - +1.2 179,938 - -0.6 179,938 - -0.6 179,959 + -1.0 179,960 - -0.5 179,960 - +0.2 179,960 - -2.8 180,036 + MPMX19_06412 0.22 -0.2 180,036 + MPMX19_06412 0.22 -0.3 180,037 - MPMX19_06412 0.22 -0.3 180,037 - MPMX19_06412 0.22 -0.1 180,126 + MPMX19_06412 0.37 -0.6 180,126 + MPMX19_06412 0.37 -0.6 180,127 - MPMX19_06412 0.37 -0.3 180,127 - MPMX19_06412 0.37 -0.6 180,212 + MPMX19_06412 0.51 -0.2 180,213 - MPMX19_06412 0.51 -0.4 180,213 - MPMX19_06412 0.51 -0.6 180,318 + MPMX19_06412 0.69 -0.1 180,318 + MPMX19_06412 0.69 -2.2 180,318 + MPMX19_06412 0.69 -1.4 180,318 + MPMX19_06412 0.69 -1.8 180,318 + MPMX19_06412 0.69 -1.1 180,319 - MPMX19_06412 0.69 -0.1 180,319 - MPMX19_06412 0.69 -1.3 180,319 - MPMX19_06412 0.69 -0.6 180,319 - MPMX19_06412 0.69 -2.3 180,353 - MPMX19_06412 0.74 -0.9 180,439 + MPMX19_06412 0.89 +0.2 180,439 + MPMX19_06412 0.89 +0.7 180,439 + MPMX19_06412 0.89 -1.7 180,439 + MPMX19_06412 0.89 +0.1 180,440 - MPMX19_06412 0.89 -0.3 180,440 - MPMX19_06412 0.89 +0.2 180,440 - MPMX19_06412 0.89 -0.6 180,440 - MPMX19_06412 0.89 -0.2 180,458 + -0.6 180,458 + -0.9 180,458 + -1.7 180,458 + +0.7 180,458 + -0.8 180,459 - -0.1 180,459 - -1.9 180,476 + +0.3 180,476 + +0.2 180,476 + -0.9 180,477 - -1.7 180,477 - -1.9 180,477 - -0.3 180,477 - -0.6 180,477 - -0.8 180,493 + -0.4 180,493 + +0.2 180,494 - -0.3 180,520 + -0.9 180,521 - -1.7 180,613 + -0.2 180,613 + +0.7 180,613 + -0.9 180,613 + +1.1 180,614 - +0.5 180,614 - +0.0 180,614 - -0.2 180,614 - -0.6 180,631 + -0.4 180,632 - +1.1 180,661 + +1.2 180,661 + -0.3 180,662 - -0.9 180,662 - -1.5 180,781 + -1.0 180,781 + +0.8 180,781 + -0.9 180,781 + -0.3 180,782 - +0.1 180,782 - -0.8 180,782 - -1.1 180,782 - -1.2 180,808 + +0.4 180,809 - -0.3 180,896 + +0.2 180,971 + +1.0 180,980 + -0.8 180,980 + +1.8 180,981 - -0.2 181,008 + +0.4 181,084 + -0.3 181,084 + -0.1 181,084 + +0.2 181,085 - -1.3 181,085 - +1.0 181,085 - -0.1 181,132 - -0.8 181,132 - -0.6 181,160 + -2.2 181,160 + -0.8 181,161 - -2.6 181,189 + +0.5 181,189 + -0.2 181,189 + -1.1 181,189 + +0.8 181,189 + -1.3 181,189 + -1.0 181,189 + -1.2 181,189 + +0.7 181,189 + -1.2 181,189 + -0.8 181,189 + -1.1 181,190 - +0.5 181,190 - -0.9 181,190 - +0.5 181,190 - -0.9 181,302 + MPMX19_06413 0.10 -0.5 181,302 + MPMX19_06413 0.10 +1.2 181,302 + MPMX19_06413 0.10 -1.0 181,303 - MPMX19_06413 0.11 -0.7 181,303 - MPMX19_06413 0.11 +0.2 181,303 - MPMX19_06413 0.11 -0.1 181,311 + MPMX19_06413 0.11 -0.9 181,311 + MPMX19_06413 0.11 -0.3 181,311 + MPMX19_06413 0.11 -0.4 181,312 - MPMX19_06413 0.11 -1.8 181,312 - MPMX19_06413 0.11 -1.3 181,312 - MPMX19_06413 0.11 -1.3 181,312 - MPMX19_06413 0.11 -0.6 181,312 - MPMX19_06413 0.11 -2.1 181,312 - MPMX19_06413 0.11 -1.1 181,312 - MPMX19_06413 0.11 -0.3 181,471 + MPMX19_06413 0.22 +0.8 181,471 + MPMX19_06413 0.22 +0.2 181,471 + MPMX19_06413 0.22 -0.9 181,471 + MPMX19_06413 0.22 +0.7 181,471 + MPMX19_06413 0.22 -0.6 181,471 + MPMX19_06413 0.22 -0.9 181,471 + MPMX19_06413 0.22 +0.8 181,471 + MPMX19_06413 0.22 +0.2 181,471 + MPMX19_06413 0.22 -0.6 181,472 - MPMX19_06413 0.22 -0.5 181,472 - MPMX19_06413 0.22 -0.9 181,472 - MPMX19_06413 0.22 -0.6 181,472 - MPMX19_06413 0.22 -0.8 181,472 - MPMX19_06413 0.22 +0.9 181,472 - MPMX19_06413 0.22 +1.1 181,472 - MPMX19_06413 0.22 -1.8 181,472 - MPMX19_06413 0.22 -1.1 181,478 + MPMX19_06413 0.22 +0.4 181,478 + MPMX19_06413 0.22 +0.4 181,478 + MPMX19_06413 0.22 -1.0 181,478 + MPMX19_06413 0.22 -0.9 181,478 + MPMX19_06413 0.22 +0.2 181,478 + MPMX19_06413 0.22 -0.2 181,478 + MPMX19_06413 0.22 -1.1 181,479 - MPMX19_06413 0.22 +0.9 181,479 - MPMX19_06413 0.22 -0.6 181,479 - MPMX19_06413 0.22 -0.3 181,479 - MPMX19_06413 0.22 -0.1 181,479 - MPMX19_06413 0.22 -0.6 181,479 - MPMX19_06413 0.22 +0.9 181,479 - MPMX19_06413 0.22 -1.2 181,479 - MPMX19_06413 0.22 +0.2 181,501 + MPMX19_06413 0.24 -1.7 181,501 + MPMX19_06413 0.24 -0.1 181,501 + MPMX19_06413 0.24 +0.7 181,502 - MPMX19_06413 0.24 -0.3 181,502 - MPMX19_06413 0.24 -1.0 181,502 - MPMX19_06413 0.24 +1.2 181,502 - MPMX19_06413 0.24 -1.4 181,502 - MPMX19_06413 0.24 -1.4 181,502 - MPMX19_06413 0.24 -0.1
Or see this region's nucleotide sequence