Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06405 and MPMX19_06406 are separated by 148 nucleotides MPMX19_06406 and MPMX19_06407 overlap by 11 nucleotides
MPMX19_06405: MPMX19_06405 - hypothetical protein, at 171,051 to 171,518
_06405
MPMX19_06406: MPMX19_06406 - hypothetical protein, at 171,667 to 172,011
_06406
MPMX19_06407: MPMX19_06407 - Cation efflux system protein CusA, at 172,001 to 175,189
_06407
Position (kb) 171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.117 kb on + strand at 170.364 kb on + strand at 170.364 kb on + strand at 170.364 kb on + strand at 170.365 kb on - strand at 170.365 kb on - strand at 170.365 kb on - strand at 170.541 kb on + strand at 170.541 kb on + strand at 170.542 kb on - strand at 170.542 kb on - strand at 170.542 kb on - strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.556 kb on + strand at 170.557 kb on - strand at 170.557 kb on - strand at 170.557 kb on - strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.827 kb on + strand at 170.827 kb on + strand at 170.827 kb on + strand at 170.827 kb on + strand at 170.827 kb on + strand at 170.828 kb on - strand at 170.828 kb on - strand at 170.828 kb on - strand at 170.828 kb on - strand at 170.910 kb on + strand at 170.911 kb on - strand at 171.008 kb on + strand at 171.008 kb on + strand at 171.009 kb on - strand at 171.009 kb on - strand at 171.009 kb on - strand at 171.009 kb on - strand at 171.052 kb on + strand at 171.052 kb on + strand at 171.052 kb on + strand at 171.053 kb on - strand at 171.064 kb on + strand at 171.064 kb on + strand at 171.064 kb on + strand at 171.064 kb on + strand at 171.064 kb on + strand at 171.064 kb on + strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.103 kb on + strand, within MPMX19_06405 at 171.103 kb on + strand, within MPMX19_06405 at 171.104 kb on - strand, within MPMX19_06405 at 171.104 kb on - strand, within MPMX19_06405 at 171.189 kb on + strand, within MPMX19_06405 at 171.189 kb on + strand, within MPMX19_06405 at 171.190 kb on - strand, within MPMX19_06405 at 171.190 kb on - strand, within MPMX19_06405 at 171.190 kb on - strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.327 kb on + strand, within MPMX19_06405 at 171.535 kb on + strand at 171.535 kb on + strand at 171.535 kb on + strand at 171.535 kb on + strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.668 kb on + strand at 171.668 kb on + strand at 171.668 kb on + strand at 171.668 kb on + strand at 171.669 kb on - strand at 171.669 kb on - strand at 171.669 kb on - strand at 171.669 kb on - strand at 171.669 kb on - strand at 171.681 kb on + strand at 171.681 kb on + strand at 171.681 kb on + strand at 171.682 kb on - strand at 171.682 kb on - strand at 171.682 kb on - strand at 171.682 kb on - strand at 171.698 kb on + strand at 171.699 kb on - strand at 171.927 kb on + strand, within MPMX19_06406 at 171.927 kb on + strand, within MPMX19_06406 at 171.928 kb on - strand, within MPMX19_06406 at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.991 kb on - strand at 171.991 kb on - strand at 172.003 kb on - strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.240 kb on + strand at 172.240 kb on + strand at 172.240 kb on + strand at 172.241 kb on - strand at 172.241 kb on - strand at 172.305 kb on + strand at 172.306 kb on - strand at 172.306 kb on - strand at 172.306 kb on - strand at 172.306 kb on - strand at 172.306 kb on - strand at 172.357 kb on + strand, within MPMX19_06407 at 172.358 kb on - strand, within MPMX19_06407 at 172.358 kb on - strand, within MPMX19_06407 at 172.380 kb on + strand, within MPMX19_06407 at 172.381 kb on - strand, within MPMX19_06407 at 172.394 kb on + strand, within MPMX19_06407 at 172.394 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 170,117 + +0.7 170,364 + +1.2 170,364 + -0.8 170,364 + -0.8 170,365 - +1.4 170,365 - -2.5 170,365 - -0.4 170,541 + -0.4 170,541 + -0.8 170,542 - -0.9 170,542 - -1.6 170,542 - -2.5 170,544 + -1.6 170,544 + -0.8 170,544 + -2.5 170,544 + +0.2 170,544 + +1.2 170,544 + -1.2 170,544 + +1.2 170,544 + -1.3 170,544 + +0.1 170,544 + -0.1 170,544 + -0.0 170,544 + -0.6 170,544 + -1.1 170,544 + -0.3 170,544 + -0.9 170,544 + -1.2 170,545 - -0.8 170,545 - +0.2 170,545 - -0.5 170,545 - -0.3 170,545 - -1.0 170,545 - -1.8 170,545 - -1.7 170,545 - -0.5 170,556 + +0.4 170,557 - -0.5 170,557 - -0.0 170,557 - -0.3 170,705 + +1.2 170,705 + +0.4 170,705 + +1.2 170,705 + -0.3 170,705 + +0.9 170,705 + -0.3 170,705 + -0.9 170,705 + -0.6 170,705 + -0.6 170,705 + -1.8 170,705 + -0.3 170,705 + -1.5 170,705 + -2.0 170,705 + -1.3 170,705 + -0.8 170,705 + -0.3 170,705 + +0.1 170,705 + -0.5 170,705 + -0.3 170,706 - -0.3 170,706 - -2.1 170,706 - -0.6 170,706 - -0.9 170,706 - +0.1 170,706 - +0.1 170,706 - -1.3 170,706 - -0.6 170,706 - +0.7 170,706 - +0.7 170,706 - -0.1 170,706 - -1.2 170,706 - -0.9 170,706 - +0.4 170,706 - -0.4 170,706 - -0.2 170,706 - -0.6 170,706 - -0.5 170,706 - -1.3 170,706 - -0.6 170,827 + -1.2 170,827 + +0.2 170,827 + -0.7 170,827 + +2.2 170,827 + -1.3 170,828 - -2.3 170,828 - +0.3 170,828 - +0.4 170,828 - +0.9 170,910 + -0.9 170,911 - +0.4 171,008 + -0.5 171,008 + +0.4 171,009 - +0.7 171,009 - -0.6 171,009 - -0.6 171,009 - -0.4 171,052 + -0.9 171,052 + -0.5 171,052 + -1.8 171,053 - -0.6 171,064 + -1.2 171,064 + +1.1 171,064 + -0.5 171,064 + +0.1 171,064 + -1.4 171,064 + -0.8 171,065 - +0.8 171,065 - -1.0 171,065 - +1.2 171,065 - -0.9 171,065 - +0.7 171,065 - -0.3 171,065 - -0.6 171,065 - +0.7 171,065 - -0.1 171,065 - -0.8 171,065 - -1.8 171,065 - +2.6 171,065 - -0.7 171,103 + MPMX19_06405 0.11 -0.2 171,103 + MPMX19_06405 0.11 +2.2 171,104 - MPMX19_06405 0.11 -0.6 171,104 - MPMX19_06405 0.11 +0.1 171,189 + MPMX19_06405 0.29 -0.5 171,189 + MPMX19_06405 0.29 -1.4 171,190 - MPMX19_06405 0.30 -1.0 171,190 - MPMX19_06405 0.30 -0.8 171,190 - MPMX19_06405 0.30 +0.9 171,232 + MPMX19_06405 0.39 -1.8 171,232 + MPMX19_06405 0.39 -0.6 171,232 + MPMX19_06405 0.39 +0.0 171,232 + MPMX19_06405 0.39 +0.2 171,232 + MPMX19_06405 0.39 -0.5 171,232 + MPMX19_06405 0.39 +0.2 171,232 + MPMX19_06405 0.39 -0.1 171,233 - MPMX19_06405 0.39 +0.8 171,233 - MPMX19_06405 0.39 +0.1 171,233 - MPMX19_06405 0.39 -0.2 171,233 - MPMX19_06405 0.39 -0.9 171,233 - MPMX19_06405 0.39 +0.8 171,233 - MPMX19_06405 0.39 +0.5 171,233 - MPMX19_06405 0.39 -1.3 171,233 - MPMX19_06405 0.39 -0.3 171,327 + MPMX19_06405 0.59 +1.4 171,535 + -0.8 171,535 + -0.9 171,535 + +1.2 171,535 + -1.0 171,536 - -0.1 171,536 - -0.5 171,536 - -0.2 171,536 - +0.4 171,536 - -0.0 171,536 - +0.5 171,536 - -0.2 171,593 + -0.1 171,593 + +0.4 171,593 + -1.1 171,593 + -0.7 171,593 + +0.7 171,593 + -0.0 171,593 + -0.1 171,593 + +2.2 171,593 + +0.9 171,593 + +0.0 171,593 + -0.7 171,593 + -0.9 171,593 + +0.4 171,593 + -1.3 171,593 + +0.7 171,593 + +0.5 171,593 + -0.8 171,593 + -0.9 171,593 + -1.1 171,593 + -0.7 171,594 - -2.3 171,594 - -0.2 171,594 - -0.5 171,594 - +0.8 171,594 - -0.6 171,594 - +0.4 171,594 - -0.5 171,594 - +0.9 171,594 - -0.7 171,594 - +0.3 171,594 - +0.1 171,594 - -0.4 171,594 - -0.6 171,594 - +0.7 171,594 - -0.2 171,594 - -0.1 171,594 - -0.2 171,594 - -0.6 171,594 - -1.1 171,594 - -2.5 171,668 + -0.5 171,668 + -0.3 171,668 + +0.8 171,668 + -1.1 171,669 - -0.6 171,669 - +0.9 171,669 - +0.6 171,669 - -0.3 171,669 - -0.3 171,681 + -1.3 171,681 + -2.3 171,681 + -0.9 171,682 - -0.7 171,682 - +1.1 171,682 - -1.2 171,682 - -1.2 171,698 + -2.0 171,699 - -1.5 171,927 + MPMX19_06406 0.75 -0.8 171,927 + MPMX19_06406 0.75 +1.2 171,928 - MPMX19_06406 0.76 -0.6 171,990 + -2.0 171,990 + +0.7 171,990 + +0.0 171,990 + -0.1 171,990 + -0.1 171,991 - -2.4 171,991 - -0.5 172,003 - -1.5 172,110 + -0.1 172,110 + -1.9 172,110 + -0.4 172,110 + -0.1 172,110 + -0.3 172,110 + -0.5 172,110 + -0.6 172,110 + +0.4 172,110 + +0.0 172,110 + -0.9 172,110 + -1.2 172,110 + -0.7 172,110 + +1.8 172,111 - -0.4 172,111 - -0.9 172,111 - -0.8 172,111 - +0.4 172,111 - -1.1 172,111 - -0.9 172,111 - +0.8 172,111 - +0.1 172,111 - -1.2 172,111 - +0.5 172,111 - +0.8 172,111 - -0.6 172,111 - -2.1 172,111 - -1.6 172,111 - -1.1 172,111 - +0.7 172,111 - -0.6 172,111 - +0.5 172,240 + -0.8 172,240 + +0.2 172,240 + +0.5 172,241 - -0.3 172,241 - -1.0 172,305 + -1.2 172,306 - +0.0 172,306 - -0.5 172,306 - -1.7 172,306 - +0.2 172,306 - -0.6 172,357 + MPMX19_06407 0.11 -1.2 172,358 - MPMX19_06407 0.11 +0.7 172,358 - MPMX19_06407 0.11 +0.4 172,380 + MPMX19_06407 0.12 -2.5 172,381 - MPMX19_06407 0.12 -0.1 172,394 + MPMX19_06407 0.12 -1.0 172,394 + MPMX19_06407 0.12 -0.6 172,479 + MPMX19_06407 0.15 +0.2 172,479 + MPMX19_06407 0.15 +1.4 172,479 + MPMX19_06407 0.15 +0.2 172,479 + MPMX19_06407 0.15 +0.3 172,479 + MPMX19_06407 0.15 -0.1 172,479 + MPMX19_06407 0.15 +0.2 172,479 + MPMX19_06407 0.15 -0.9 172,479 + MPMX19_06407 0.15 -1.1 172,479 + MPMX19_06407 0.15 -0.8 172,479 + MPMX19_06407 0.15 -0.5 172,479 + MPMX19_06407 0.15 +0.5 172,479 + MPMX19_06407 0.15 +0.3 172,479 + MPMX19_06407 0.15 +0.0 172,479 + MPMX19_06407 0.15 +0.7 172,479 + MPMX19_06407 0.15 -1.0 172,479 + MPMX19_06407 0.15 -1.1 172,479 + MPMX19_06407 0.15 +0.2 172,479 + MPMX19_06407 0.15 -0.3 172,480 - MPMX19_06407 0.15 -0.1 172,480 - MPMX19_06407 0.15 +0.1 172,480 - MPMX19_06407 0.15 -0.6 172,480 - MPMX19_06407 0.15 +0.0 172,480 - MPMX19_06407 0.15 -0.6 172,480 - MPMX19_06407 0.15 -0.8 172,480 - MPMX19_06407 0.15 -1.7 172,480 - MPMX19_06407 0.15 -0.8 172,480 - MPMX19_06407 0.15 -0.6 172,480 - MPMX19_06407 0.15 -0.1 172,480 - MPMX19_06407 0.15 +0.2
Or see this region's nucleotide sequence