Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06385

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06384 and MPMX19_06385 are separated by 313 nucleotidesMPMX19_06385 and MPMX19_06386 are separated by 10 nucleotidesMPMX19_06386 and MPMX19_06387 are separated by 111 nucleotides MPMX19_06384: MPMX19_06384 - Cadmium, cobalt and zinc/H(+)-K(+) antiporter, at 152,667 to 153,656 _06384 MPMX19_06385: MPMX19_06385 - hypothetical protein, at 153,970 to 154,146 _06385 MPMX19_06386: MPMX19_06386 - hypothetical protein, at 154,157 to 154,423 _06386 MPMX19_06387: MPMX19_06387 - hypothetical protein, at 154,535 to 155,488 _06387 Position (kb) 153 154 155Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 153.112 kb on + strand, within MPMX19_06384at 153.112 kb on + strand, within MPMX19_06384at 153.113 kb on - strand, within MPMX19_06384at 153.113 kb on - strand, within MPMX19_06384at 153.153 kb on - strand, within MPMX19_06384at 153.153 kb on - strand, within MPMX19_06384at 153.213 kb on - strand, within MPMX19_06384at 153.303 kb on + strand, within MPMX19_06384at 153.303 kb on + strand, within MPMX19_06384at 153.337 kb on + strand, within MPMX19_06384at 153.337 kb on + strand, within MPMX19_06384at 153.337 kb on + strand, within MPMX19_06384at 153.337 kb on + strand, within MPMX19_06384at 153.337 kb on + strand, within MPMX19_06384at 153.337 kb on + strand, within MPMX19_06384at 153.337 kb on + strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.338 kb on - strand, within MPMX19_06384at 153.419 kb on + strand, within MPMX19_06384at 153.419 kb on + strand, within MPMX19_06384at 153.419 kb on + strand, within MPMX19_06384at 153.419 kb on + strand, within MPMX19_06384at 153.419 kb on + strand, within MPMX19_06384at 153.419 kb on + strand, within MPMX19_06384at 153.420 kb on - strand, within MPMX19_06384at 153.420 kb on - strand, within MPMX19_06384at 153.420 kb on - strand, within MPMX19_06384at 153.420 kb on - strand, within MPMX19_06384at 153.420 kb on - strand, within MPMX19_06384at 153.420 kb on - strand, within MPMX19_06384at 153.420 kb on - strand, within MPMX19_06384at 153.420 kb on - strand, within MPMX19_06384at 153.420 kb on - strand, within MPMX19_06384at 153.466 kb on + strand, within MPMX19_06384at 153.466 kb on + strand, within MPMX19_06384at 153.466 kb on + strand, within MPMX19_06384at 153.466 kb on + strand, within MPMX19_06384at 153.467 kb on - strand, within MPMX19_06384at 153.467 kb on - strand, within MPMX19_06384at 153.467 kb on - strand, within MPMX19_06384at 153.467 kb on - strand, within MPMX19_06384at 153.467 kb on - strand, within MPMX19_06384at 153.467 kb on - strand, within MPMX19_06384at 153.467 kb on - strand, within MPMX19_06384at 153.529 kb on + strand, within MPMX19_06384at 153.529 kb on + strand, within MPMX19_06384at 153.529 kb on + strand, within MPMX19_06384at 153.530 kb on - strand, within MPMX19_06384at 153.530 kb on - strand, within MPMX19_06384at 153.530 kb on - strand, within MPMX19_06384at 153.599 kb on + strandat 153.599 kb on + strandat 153.605 kb on + strandat 153.606 kb on - strandat 153.679 kb on + strandat 153.679 kb on + strandat 153.680 kb on - strandat 153.680 kb on - strandat 153.733 kb on + strandat 153.733 kb on + strandat 153.733 kb on + strandat 153.734 kb on - strandat 153.856 kb on + strandat 153.856 kb on + strandat 153.856 kb on + strandat 153.856 kb on + strandat 153.856 kb on + strandat 153.856 kb on + strandat 153.856 kb on + strandat 153.856 kb on + strandat 153.856 kb on + strandat 153.856 kb on + strandat 153.856 kb on + strandat 153.856 kb on + strandat 153.857 kb on - strandat 153.857 kb on - strandat 153.857 kb on - strandat 153.857 kb on - strandat 153.857 kb on - strandat 153.857 kb on - strandat 153.857 kb on - strandat 153.971 kb on + strandat 153.972 kb on - strandat 154.085 kb on + strand, within MPMX19_06385at 154.085 kb on + strand, within MPMX19_06385at 154.085 kb on + strand, within MPMX19_06385at 154.085 kb on + strand, within MPMX19_06385at 154.085 kb on + strand, within MPMX19_06385at 154.086 kb on - strand, within MPMX19_06385at 154.086 kb on - strand, within MPMX19_06385at 154.086 kb on - strand, within MPMX19_06385at 154.086 kb on - strand, within MPMX19_06385at 154.158 kb on + strandat 154.158 kb on + strandat 154.158 kb on + strandat 154.158 kb on + strandat 154.158 kb on + strandat 154.158 kb on + strandat 154.159 kb on - strandat 154.159 kb on - strandat 154.159 kb on - strandat 154.164 kb on + strandat 154.165 kb on - strandat 154.165 kb on - strandat 154.165 kb on - strandat 154.249 kb on + strand, within MPMX19_06386at 154.250 kb on - strand, within MPMX19_06386at 154.436 kb on - strandat 154.737 kb on + strand, within MPMX19_06387at 154.737 kb on + strand, within MPMX19_06387at 154.737 kb on + strand, within MPMX19_06387at 154.737 kb on + strand, within MPMX19_06387at 154.737 kb on + strand, within MPMX19_06387at 154.828 kb on + strand, within MPMX19_06387at 154.828 kb on + strand, within MPMX19_06387at 154.829 kb on - strand, within MPMX19_06387

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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153,112 + MPMX19_06384 0.45 -0.3
153,112 + MPMX19_06384 0.45 -1.3
153,113 - MPMX19_06384 0.45 +1.5
153,113 - MPMX19_06384 0.45 +0.7
153,153 - MPMX19_06384 0.49 -0.2
153,153 - MPMX19_06384 0.49 -0.0
153,213 - MPMX19_06384 0.55 -1.2
153,303 + MPMX19_06384 0.64 -0.2
153,303 + MPMX19_06384 0.64 -0.6
153,337 + MPMX19_06384 0.68 +0.4
153,337 + MPMX19_06384 0.68 +1.4
153,337 + MPMX19_06384 0.68 -0.8
153,337 + MPMX19_06384 0.68 +0.7
153,337 + MPMX19_06384 0.68 +0.5
153,337 + MPMX19_06384 0.68 -0.7
153,337 + MPMX19_06384 0.68 -0.7
153,338 - MPMX19_06384 0.68 +0.4
153,338 - MPMX19_06384 0.68 -2.8
153,338 - MPMX19_06384 0.68 -0.6
153,338 - MPMX19_06384 0.68 -0.6
153,338 - MPMX19_06384 0.68 +0.8
153,338 - MPMX19_06384 0.68 -0.3
153,338 - MPMX19_06384 0.68 -0.2
153,338 - MPMX19_06384 0.68 -0.9
153,338 - MPMX19_06384 0.68 -1.0
153,338 - MPMX19_06384 0.68 -0.9
153,338 - MPMX19_06384 0.68 -1.1
153,338 - MPMX19_06384 0.68 +0.8
153,419 + MPMX19_06384 0.76 -0.3
153,419 + MPMX19_06384 0.76 +1.4
153,419 + MPMX19_06384 0.76 +0.4
153,419 + MPMX19_06384 0.76 +1.2
153,419 + MPMX19_06384 0.76 -1.5
153,419 + MPMX19_06384 0.76 -0.8
153,420 - MPMX19_06384 0.76 +0.5
153,420 - MPMX19_06384 0.76 +0.5
153,420 - MPMX19_06384 0.76 +0.4
153,420 - MPMX19_06384 0.76 -0.6
153,420 - MPMX19_06384 0.76 +0.5
153,420 - MPMX19_06384 0.76 +0.7
153,420 - MPMX19_06384 0.76 +1.7
153,420 - MPMX19_06384 0.76 +0.7
153,420 - MPMX19_06384 0.76 +1.7
153,466 + MPMX19_06384 0.81 +0.5
153,466 + MPMX19_06384 0.81 -0.3
153,466 + MPMX19_06384 0.81 -0.8
153,466 + MPMX19_06384 0.81 -0.2
153,467 - MPMX19_06384 0.81 +0.5
153,467 - MPMX19_06384 0.81 -0.8
153,467 - MPMX19_06384 0.81 -2.0
153,467 - MPMX19_06384 0.81 +0.8
153,467 - MPMX19_06384 0.81 -1.2
153,467 - MPMX19_06384 0.81 -0.1
153,467 - MPMX19_06384 0.81 -0.8
153,529 + MPMX19_06384 0.87 -0.8
153,529 + MPMX19_06384 0.87 -1.8
153,529 + MPMX19_06384 0.87 +0.9
153,530 - MPMX19_06384 0.87 -0.1
153,530 - MPMX19_06384 0.87 -0.1
153,530 - MPMX19_06384 0.87 +0.3
153,599 + -0.1
153,599 + +0.0
153,605 + -1.5
153,606 - -0.4
153,679 + -2.2
153,679 + -2.1
153,680 - -1.3
153,680 - -0.9
153,733 + -0.8
153,733 + -0.6
153,733 + -0.6
153,734 - -2.1
153,856 + -0.6
153,856 + +0.9
153,856 + -1.1
153,856 + +0.7
153,856 + +0.5
153,856 + +2.2
153,856 + -0.6
153,856 + -1.0
153,856 + +0.2
153,856 + +0.5
153,856 + +0.6
153,856 + -1.2
153,857 - -1.2
153,857 - +0.1
153,857 - +0.0
153,857 - +0.2
153,857 - -2.6
153,857 - +0.5
153,857 - -0.3
153,971 + -2.1
153,972 - +0.5
154,085 + MPMX19_06385 0.65 +0.2
154,085 + MPMX19_06385 0.65 +1.1
154,085 + MPMX19_06385 0.65 -0.6
154,085 + MPMX19_06385 0.65 -0.4
154,085 + MPMX19_06385 0.65 -0.2
154,086 - MPMX19_06385 0.66 +0.5
154,086 - MPMX19_06385 0.66 -0.1
154,086 - MPMX19_06385 0.66 +0.4
154,086 - MPMX19_06385 0.66 +0.4
154,158 + -0.9
154,158 + -0.6
154,158 + +0.1
154,158 + +0.7
154,158 + -1.4
154,158 + +0.2
154,159 - -1.1
154,159 - +2.2
154,159 - -0.3
154,164 + -1.2
154,165 - -0.9
154,165 - -0.2
154,165 - -0.1
154,249 + MPMX19_06386 0.34 -0.7
154,250 - MPMX19_06386 0.35 +0.9
154,436 - -0.8
154,737 + MPMX19_06387 0.21 -0.8
154,737 + MPMX19_06387 0.21 -0.1
154,737 + MPMX19_06387 0.21 +0.7
154,737 + MPMX19_06387 0.21 +0.7
154,737 + MPMX19_06387 0.21 -1.5
154,828 + MPMX19_06387 0.31 -0.6
154,828 + MPMX19_06387 0.31 -1.2
154,829 - MPMX19_06387 0.31 +0.2

Or see this region's nucleotide sequence