Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06383 and MPMX19_06384 are separated by 172 nucleotides MPMX19_06384 and MPMX19_06385 are separated by 313 nucleotides MPMX19_06385 and MPMX19_06386 are separated by 10 nucleotides MPMX19_06386 and MPMX19_06387 are separated by 111 nucleotides
MPMX19_06383: MPMX19_06383 - hypothetical protein, at 151,808 to 152,494
_06383
MPMX19_06384: MPMX19_06384 - Cadmium, cobalt and zinc/H(+)-K(+) antiporter, at 152,667 to 153,656
_06384
MPMX19_06385: MPMX19_06385 - hypothetical protein, at 153,970 to 154,146
_06385
MPMX19_06386: MPMX19_06386 - hypothetical protein, at 154,157 to 154,423
_06386
MPMX19_06387: MPMX19_06387 - hypothetical protein, at 154,535 to 155,488
_06387
Position (kb) 152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 151.798 kb on + strand at 151.798 kb on + strand at 151.798 kb on + strand at 151.810 kb on - strand at 151.827 kb on + strand at 151.838 kb on + strand at 151.838 kb on + strand at 151.838 kb on + strand at 151.839 kb on - strand at 151.883 kb on + strand, within MPMX19_06383 at 151.923 kb on + strand, within MPMX19_06383 at 151.923 kb on + strand, within MPMX19_06383 at 151.923 kb on + strand, within MPMX19_06383 at 151.924 kb on - strand, within MPMX19_06383 at 152.028 kb on - strand, within MPMX19_06383 at 152.028 kb on - strand, within MPMX19_06383 at 152.287 kb on + strand, within MPMX19_06383 at 152.288 kb on - strand, within MPMX19_06383 at 152.421 kb on + strand, within MPMX19_06383 at 152.422 kb on - strand, within MPMX19_06383 at 152.422 kb on - strand, within MPMX19_06383 at 152.422 kb on - strand, within MPMX19_06383 at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.490 kb on + strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.491 kb on - strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.494 kb on + strand at 152.496 kb on - strand at 152.669 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.700 kb on - strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.721 kb on + strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.722 kb on - strand at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.855 kb on + strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.856 kb on - strand, within MPMX19_06384 at 152.894 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.899 kb on + strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 152.900 kb on - strand, within MPMX19_06384 at 153.112 kb on + strand, within MPMX19_06384 at 153.112 kb on + strand, within MPMX19_06384 at 153.113 kb on - strand, within MPMX19_06384 at 153.113 kb on - strand, within MPMX19_06384 at 153.153 kb on - strand, within MPMX19_06384 at 153.153 kb on - strand, within MPMX19_06384 at 153.213 kb on - strand, within MPMX19_06384 at 153.303 kb on + strand, within MPMX19_06384 at 153.303 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.337 kb on + strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.338 kb on - strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.419 kb on + strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.420 kb on - strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.466 kb on + strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.467 kb on - strand, within MPMX19_06384 at 153.529 kb on + strand, within MPMX19_06384 at 153.529 kb on + strand, within MPMX19_06384 at 153.529 kb on + strand, within MPMX19_06384 at 153.530 kb on - strand, within MPMX19_06384 at 153.530 kb on - strand, within MPMX19_06384 at 153.530 kb on - strand, within MPMX19_06384 at 153.599 kb on + strand at 153.599 kb on + strand at 153.605 kb on + strand at 153.606 kb on - strand at 153.679 kb on + strand at 153.679 kb on + strand at 153.680 kb on - strand at 153.680 kb on - strand at 153.733 kb on + strand at 153.733 kb on + strand at 153.733 kb on + strand at 153.734 kb on - strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.971 kb on + strand at 153.972 kb on - strand at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.159 kb on - strand at 154.159 kb on - strand at 154.159 kb on - strand at 154.164 kb on + strand at 154.165 kb on - strand at 154.165 kb on - strand at 154.165 kb on - strand at 154.249 kb on + strand, within MPMX19_06386 at 154.250 kb on - strand, within MPMX19_06386 at 154.436 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 151,798 + +0.8 151,798 + +0.0 151,798 + +0.4 151,810 - -3.7 151,827 + +0.9 151,838 + +0.5 151,838 + +0.5 151,838 + -1.1 151,839 - -0.2 151,883 + MPMX19_06383 0.11 -1.2 151,923 + MPMX19_06383 0.17 -1.1 151,923 + MPMX19_06383 0.17 +0.5 151,923 + MPMX19_06383 0.17 +0.7 151,924 - MPMX19_06383 0.17 +0.2 152,028 - MPMX19_06383 0.32 +0.7 152,028 - MPMX19_06383 0.32 -1.1 152,287 + MPMX19_06383 0.70 -1.1 152,288 - MPMX19_06383 0.70 +1.2 152,421 + MPMX19_06383 0.89 -1.6 152,422 - MPMX19_06383 0.89 +0.4 152,422 - MPMX19_06383 0.89 -2.1 152,422 - MPMX19_06383 0.89 -0.6 152,490 + +0.4 152,490 + -0.3 152,490 + -1.8 152,490 + -1.2 152,490 + -0.9 152,490 + -0.1 152,490 + -0.6 152,490 + -2.1 152,491 - +0.2 152,491 - +0.7 152,491 - -1.0 152,491 - -0.6 152,491 - +0.1 152,491 - -0.3 152,491 - -0.8 152,494 + -0.9 152,494 + -0.4 152,494 + -1.2 152,494 + -0.2 152,494 + -1.7 152,494 + -0.1 152,496 - -1.3 152,669 - +1.2 152,700 - -1.6 152,700 - -0.7 152,700 - -1.9 152,700 - -1.1 152,700 - -0.9 152,721 + +1.8 152,721 + -0.2 152,721 + -0.9 152,721 + -0.2 152,721 + -0.2 152,721 + -0.6 152,721 + +0.1 152,721 + +0.4 152,721 + -2.0 152,721 + +1.7 152,721 + -0.9 152,722 - -0.1 152,722 - -0.6 152,722 - -2.2 152,722 - -0.9 152,722 - -3.1 152,722 - +0.1 152,722 - +0.8 152,722 - -0.3 152,722 - +0.7 152,722 - -0.2 152,722 - -0.6 152,855 + MPMX19_06384 0.19 +0.9 152,855 + MPMX19_06384 0.19 +0.3 152,855 + MPMX19_06384 0.19 +0.4 152,855 + MPMX19_06384 0.19 -1.8 152,855 + MPMX19_06384 0.19 +0.0 152,855 + MPMX19_06384 0.19 +0.5 152,855 + MPMX19_06384 0.19 +0.4 152,855 + MPMX19_06384 0.19 +1.2 152,856 - MPMX19_06384 0.19 -0.3 152,856 - MPMX19_06384 0.19 -0.1 152,856 - MPMX19_06384 0.19 +0.7 152,856 - MPMX19_06384 0.19 -0.3 152,856 - MPMX19_06384 0.19 -0.1 152,856 - MPMX19_06384 0.19 -0.5 152,856 - MPMX19_06384 0.19 +0.2 152,856 - MPMX19_06384 0.19 +0.3 152,856 - MPMX19_06384 0.19 -0.9 152,856 - MPMX19_06384 0.19 -0.6 152,856 - MPMX19_06384 0.19 -0.2 152,856 - MPMX19_06384 0.19 -0.1 152,856 - MPMX19_06384 0.19 -1.5 152,856 - MPMX19_06384 0.19 -0.3 152,856 - MPMX19_06384 0.19 -0.3 152,856 - MPMX19_06384 0.19 +0.2 152,894 + MPMX19_06384 0.23 +0.1 152,899 + MPMX19_06384 0.23 +0.7 152,899 + MPMX19_06384 0.23 +0.7 152,899 + MPMX19_06384 0.23 -1.8 152,899 + MPMX19_06384 0.23 -0.6 152,899 + MPMX19_06384 0.23 +0.9 152,899 + MPMX19_06384 0.23 +0.4 152,899 + MPMX19_06384 0.23 -0.3 152,899 + MPMX19_06384 0.23 -0.3 152,899 + MPMX19_06384 0.23 +0.8 152,899 + MPMX19_06384 0.23 +0.8 152,900 - MPMX19_06384 0.24 +0.9 152,900 - MPMX19_06384 0.24 +0.7 152,900 - MPMX19_06384 0.24 -0.1 152,900 - MPMX19_06384 0.24 -0.3 152,900 - MPMX19_06384 0.24 -1.2 152,900 - MPMX19_06384 0.24 -0.5 152,900 - MPMX19_06384 0.24 -1.4 152,900 - MPMX19_06384 0.24 -1.5 152,900 - MPMX19_06384 0.24 -0.5 152,900 - MPMX19_06384 0.24 -0.6 153,112 + MPMX19_06384 0.45 -0.3 153,112 + MPMX19_06384 0.45 -1.3 153,113 - MPMX19_06384 0.45 +1.5 153,113 - MPMX19_06384 0.45 +0.7 153,153 - MPMX19_06384 0.49 -0.2 153,153 - MPMX19_06384 0.49 -0.0 153,213 - MPMX19_06384 0.55 -1.2 153,303 + MPMX19_06384 0.64 -0.2 153,303 + MPMX19_06384 0.64 -0.6 153,337 + MPMX19_06384 0.68 +0.4 153,337 + MPMX19_06384 0.68 +1.4 153,337 + MPMX19_06384 0.68 -0.8 153,337 + MPMX19_06384 0.68 +0.7 153,337 + MPMX19_06384 0.68 +0.5 153,337 + MPMX19_06384 0.68 -0.7 153,337 + MPMX19_06384 0.68 -0.7 153,338 - MPMX19_06384 0.68 +0.4 153,338 - MPMX19_06384 0.68 -2.8 153,338 - MPMX19_06384 0.68 -0.6 153,338 - MPMX19_06384 0.68 -0.6 153,338 - MPMX19_06384 0.68 +0.8 153,338 - MPMX19_06384 0.68 -0.3 153,338 - MPMX19_06384 0.68 -0.2 153,338 - MPMX19_06384 0.68 -0.9 153,338 - MPMX19_06384 0.68 -1.0 153,338 - MPMX19_06384 0.68 -0.9 153,338 - MPMX19_06384 0.68 -1.1 153,338 - MPMX19_06384 0.68 +0.8 153,419 + MPMX19_06384 0.76 -0.3 153,419 + MPMX19_06384 0.76 +1.4 153,419 + MPMX19_06384 0.76 +0.4 153,419 + MPMX19_06384 0.76 +1.2 153,419 + MPMX19_06384 0.76 -1.5 153,419 + MPMX19_06384 0.76 -0.8 153,420 - MPMX19_06384 0.76 +0.5 153,420 - MPMX19_06384 0.76 +0.5 153,420 - MPMX19_06384 0.76 +0.4 153,420 - MPMX19_06384 0.76 -0.6 153,420 - MPMX19_06384 0.76 +0.5 153,420 - MPMX19_06384 0.76 +0.7 153,420 - MPMX19_06384 0.76 +1.7 153,420 - MPMX19_06384 0.76 +0.7 153,420 - MPMX19_06384 0.76 +1.7 153,466 + MPMX19_06384 0.81 +0.5 153,466 + MPMX19_06384 0.81 -0.3 153,466 + MPMX19_06384 0.81 -0.8 153,466 + MPMX19_06384 0.81 -0.2 153,467 - MPMX19_06384 0.81 +0.5 153,467 - MPMX19_06384 0.81 -0.8 153,467 - MPMX19_06384 0.81 -2.0 153,467 - MPMX19_06384 0.81 +0.8 153,467 - MPMX19_06384 0.81 -1.2 153,467 - MPMX19_06384 0.81 -0.1 153,467 - MPMX19_06384 0.81 -0.8 153,529 + MPMX19_06384 0.87 -0.8 153,529 + MPMX19_06384 0.87 -1.8 153,529 + MPMX19_06384 0.87 +0.9 153,530 - MPMX19_06384 0.87 -0.1 153,530 - MPMX19_06384 0.87 -0.1 153,530 - MPMX19_06384 0.87 +0.3 153,599 + -0.1 153,599 + +0.0 153,605 + -1.5 153,606 - -0.4 153,679 + -2.2 153,679 + -2.1 153,680 - -1.3 153,680 - -0.9 153,733 + -0.8 153,733 + -0.6 153,733 + -0.6 153,734 - -2.1 153,856 + -0.6 153,856 + +0.9 153,856 + -1.1 153,856 + +0.7 153,856 + +0.5 153,856 + +2.2 153,856 + -0.6 153,856 + -1.0 153,856 + +0.2 153,856 + +0.5 153,856 + +0.6 153,856 + -1.2 153,857 - -1.2 153,857 - +0.1 153,857 - +0.0 153,857 - +0.2 153,857 - -2.6 153,857 - +0.5 153,857 - -0.3 153,971 + -2.1 153,972 - +0.5 154,085 + MPMX19_06385 0.65 +0.2 154,085 + MPMX19_06385 0.65 +1.1 154,085 + MPMX19_06385 0.65 -0.6 154,085 + MPMX19_06385 0.65 -0.4 154,085 + MPMX19_06385 0.65 -0.2 154,086 - MPMX19_06385 0.66 +0.5 154,086 - MPMX19_06385 0.66 -0.1 154,086 - MPMX19_06385 0.66 +0.4 154,086 - MPMX19_06385 0.66 +0.4 154,158 + -0.9 154,158 + -0.6 154,158 + +0.1 154,158 + +0.7 154,158 + -1.4 154,158 + +0.2 154,159 - -1.1 154,159 - +2.2 154,159 - -0.3 154,164 + -1.2 154,165 - -0.9 154,165 - -0.2 154,165 - -0.1 154,249 + MPMX19_06386 0.34 -0.7 154,250 - MPMX19_06386 0.35 +0.9 154,436 - -0.8
Or see this region's nucleotide sequence