Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06336 and MPMX19_06337 are separated by 185 nucleotides MPMX19_06337 and MPMX19_06338 are separated by 19 nucleotides MPMX19_06338 and MPMX19_06339 are separated by 21 nucleotides MPMX19_06339 and MPMX19_06340 are separated by 174 nucleotides MPMX19_06340 and MPMX19_06341 are separated by 75 nucleotides
MPMX19_06336: MPMX19_06336 - putative oxidoreductase CzcO, at 105,219 to 106,310
_06336
MPMX19_06337: MPMX19_06337 - Arsenic resistance transcriptional regulator ArsR1, at 106,496 to 106,846
_06337
MPMX19_06338: MPMX19_06338 - hypothetical protein, at 106,866 to 107,831
_06338
MPMX19_06339: MPMX19_06339 - hypothetical protein, at 107,853 to 108,089
_06339
MPMX19_06340: MPMX19_06340 - hypothetical protein, at 108,264 to 108,413
_06340
MPMX19_06341: MPMX19_06341 - hypothetical protein, at 108,489 to 108,833
_06341
Position (kb)
106
107
108 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 105.869 kb on - strand, within MPMX19_06336 at 105.869 kb on - strand, within MPMX19_06336 at 106.019 kb on - strand, within MPMX19_06336 at 106.030 kb on + strand, within MPMX19_06336 at 106.030 kb on + strand, within MPMX19_06336 at 106.030 kb on + strand, within MPMX19_06336 at 106.042 kb on + strand, within MPMX19_06336 at 106.042 kb on + strand, within MPMX19_06336 at 106.043 kb on - strand, within MPMX19_06336 at 106.043 kb on - strand, within MPMX19_06336 at 106.043 kb on - strand, within MPMX19_06336 at 106.287 kb on + strand at 106.356 kb on + strand at 106.356 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.374 kb on + strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.375 kb on - strand at 106.377 kb on + strand at 106.377 kb on + strand at 106.377 kb on + strand at 106.377 kb on + strand at 106.377 kb on + strand at 106.377 kb on + strand at 106.378 kb on - strand at 106.378 kb on - strand at 106.412 kb on + strand at 106.412 kb on + strand at 106.453 kb on + strand at 106.453 kb on + strand at 106.453 kb on + strand at 106.484 kb on - strand at 106.489 kb on + strand at 106.490 kb on - strand at 106.495 kb on + strand at 106.495 kb on + strand at 106.495 kb on + strand at 106.495 kb on + strand at 106.495 kb on + strand at 106.495 kb on + strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.496 kb on - strand at 106.528 kb on - strand at 106.700 kb on + strand, within MPMX19_06337 at 106.700 kb on + strand, within MPMX19_06337 at 106.700 kb on + strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.701 kb on - strand, within MPMX19_06337 at 106.880 kb on + strand at 106.881 kb on - strand at 106.905 kb on + strand at 106.906 kb on - strand at 107.036 kb on - strand, within MPMX19_06338 at 107.058 kb on + strand, within MPMX19_06338 at 107.059 kb on - strand, within MPMX19_06338 at 107.059 kb on - strand, within MPMX19_06338 at 107.089 kb on - strand, within MPMX19_06338 at 107.089 kb on - strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.280 kb on + strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.281 kb on - strand, within MPMX19_06338 at 107.300 kb on + strand, within MPMX19_06338 at 107.300 kb on + strand, within MPMX19_06338 at 107.300 kb on + strand, within MPMX19_06338 at 107.300 kb on + strand, within MPMX19_06338 at 107.301 kb on - strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.349 kb on + strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.350 kb on - strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.361 kb on + strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.362 kb on - strand, within MPMX19_06338 at 107.433 kb on + strand, within MPMX19_06338 at 107.434 kb on - strand, within MPMX19_06338 at 107.478 kb on + strand, within MPMX19_06338 at 107.478 kb on + strand, within MPMX19_06338 at 107.478 kb on + strand, within MPMX19_06338 at 107.479 kb on - strand, within MPMX19_06338 at 107.479 kb on - strand, within MPMX19_06338 at 107.479 kb on - strand, within MPMX19_06338 at 107.520 kb on + strand, within MPMX19_06338 at 107.520 kb on + strand, within MPMX19_06338 at 107.520 kb on + strand, within MPMX19_06338 at 107.520 kb on + strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.521 kb on - strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.547 kb on + strand, within MPMX19_06338 at 107.698 kb on + strand, within MPMX19_06338 at 107.699 kb on - strand, within MPMX19_06338 at 107.699 kb on - strand, within MPMX19_06338 at 107.699 kb on - strand, within MPMX19_06338 at 107.805 kb on + strand at 107.805 kb on + strand at 107.805 kb on + strand at 108.087 kb on + strand at 108.087 kb on + strand at 108.088 kb on - strand at 108.088 kb on - strand at 108.130 kb on + strand at 108.130 kb on + strand at 108.172 kb on + strand at 108.172 kb on + strand at 108.173 kb on - strand at 108.173 kb on - strand at 108.173 kb on - strand at 108.173 kb on - strand at 108.175 kb on + strand at 108.175 kb on + strand at 108.319 kb on + strand, within MPMX19_06340 at 108.319 kb on + strand, within MPMX19_06340 at 108.320 kb on - strand, within MPMX19_06340 at 108.344 kb on + strand, within MPMX19_06340 at 108.344 kb on + strand, within MPMX19_06340 at 108.345 kb on - strand, within MPMX19_06340 at 108.345 kb on - strand, within MPMX19_06340 at 108.345 kb on - strand, within MPMX19_06340 at 108.348 kb on + strand, within MPMX19_06340 at 108.349 kb on - strand, within MPMX19_06340 at 108.485 kb on + strand at 108.485 kb on + strand at 108.485 kb on + strand at 108.486 kb on - strand at 108.486 kb on - strand at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.606 kb on + strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.607 kb on - strand, within MPMX19_06341 at 108.825 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 105,869 - MPMX19_06336 0.60 -1.1 105,869 - MPMX19_06336 0.60 -2.6 106,019 - MPMX19_06336 0.73 -0.8 106,030 + MPMX19_06336 0.74 -0.2 106,030 + MPMX19_06336 0.74 -1.7 106,030 + MPMX19_06336 0.74 +0.2 106,042 + MPMX19_06336 0.75 -0.1 106,042 + MPMX19_06336 0.75 +0.3 106,043 - MPMX19_06336 0.75 +0.4 106,043 - MPMX19_06336 0.75 -1.2 106,043 - MPMX19_06336 0.75 -1.8 106,287 + -0.1 106,356 + +0.4 106,356 + +0.5 106,374 + -1.3 106,374 + -0.3 106,374 + -0.1 106,374 + +0.9 106,374 + -0.3 106,374 + -2.0 106,374 + -0.6 106,375 - -1.2 106,375 - -0.5 106,375 - -0.6 106,375 - -0.6 106,375 - -0.1 106,375 - +1.2 106,375 - -0.8 106,375 - +0.5 106,375 - -0.3 106,377 + -1.0 106,377 + +0.2 106,377 + -0.3 106,377 + +0.1 106,377 + -1.1 106,377 + +0.4 106,378 - -0.8 106,378 - -0.8 106,412 + +0.1 106,412 + -0.6 106,453 + -0.3 106,453 + -0.3 106,453 + -0.8 106,484 - -0.3 106,489 + -1.6 106,490 - -1.3 106,495 + -0.2 106,495 + +0.4 106,495 + -0.1 106,495 + -0.6 106,495 + -1.3 106,495 + -0.8 106,496 - -0.9 106,496 - -1.6 106,496 - -0.9 106,496 - -0.9 106,496 - -1.7 106,496 - -1.7 106,496 - -1.1 106,528 - -1.3 106,700 + MPMX19_06337 0.58 -0.8 106,700 + MPMX19_06337 0.58 +0.1 106,700 + MPMX19_06337 0.58 -0.7 106,701 - MPMX19_06337 0.58 +0.2 106,701 - MPMX19_06337 0.58 -0.2 106,701 - MPMX19_06337 0.58 -0.7 106,701 - MPMX19_06337 0.58 -1.3 106,701 - MPMX19_06337 0.58 -0.1 106,701 - MPMX19_06337 0.58 -0.5 106,701 - MPMX19_06337 0.58 -1.8 106,880 + -0.1 106,881 - -1.8 106,905 + -1.9 106,906 - -0.3 107,036 - MPMX19_06338 0.18 -0.1 107,058 + MPMX19_06338 0.20 -0.6 107,059 - MPMX19_06338 0.20 -0.1 107,059 - MPMX19_06338 0.20 -0.0 107,089 - MPMX19_06338 0.23 -0.8 107,089 - MPMX19_06338 0.23 -0.3 107,280 + MPMX19_06338 0.43 -0.4 107,280 + MPMX19_06338 0.43 +0.9 107,280 + MPMX19_06338 0.43 -0.3 107,280 + MPMX19_06338 0.43 +0.0 107,280 + MPMX19_06338 0.43 -0.1 107,280 + MPMX19_06338 0.43 -1.1 107,280 + MPMX19_06338 0.43 -1.3 107,280 + MPMX19_06338 0.43 -0.1 107,280 + MPMX19_06338 0.43 -0.8 107,280 + MPMX19_06338 0.43 +0.4 107,280 + MPMX19_06338 0.43 +0.2 107,280 + MPMX19_06338 0.43 -0.6 107,280 + MPMX19_06338 0.43 -1.6 107,280 + MPMX19_06338 0.43 +0.2 107,280 + MPMX19_06338 0.43 -0.0 107,280 + MPMX19_06338 0.43 -1.5 107,280 + MPMX19_06338 0.43 -0.3 107,280 + MPMX19_06338 0.43 -1.1 107,280 + MPMX19_06338 0.43 -0.4 107,280 + MPMX19_06338 0.43 -0.9 107,280 + MPMX19_06338 0.43 -0.1 107,280 + MPMX19_06338 0.43 +0.4 107,280 + MPMX19_06338 0.43 -1.1 107,280 + MPMX19_06338 0.43 +0.5 107,281 - MPMX19_06338 0.43 -0.8 107,281 - MPMX19_06338 0.43 -0.2 107,281 - MPMX19_06338 0.43 -0.6 107,281 - MPMX19_06338 0.43 -0.9 107,281 - MPMX19_06338 0.43 +0.7 107,281 - MPMX19_06338 0.43 +0.7 107,281 - MPMX19_06338 0.43 -0.1 107,281 - MPMX19_06338 0.43 -0.6 107,281 - MPMX19_06338 0.43 -2.4 107,281 - MPMX19_06338 0.43 -0.7 107,281 - MPMX19_06338 0.43 +1.8 107,281 - MPMX19_06338 0.43 -1.8 107,281 - MPMX19_06338 0.43 +1.2 107,281 - MPMX19_06338 0.43 -0.4 107,281 - MPMX19_06338 0.43 -0.8 107,281 - MPMX19_06338 0.43 -0.9 107,281 - MPMX19_06338 0.43 +0.9 107,300 + MPMX19_06338 0.45 -1.8 107,300 + MPMX19_06338 0.45 +0.2 107,300 + MPMX19_06338 0.45 -0.3 107,300 + MPMX19_06338 0.45 +1.5 107,301 - MPMX19_06338 0.45 +0.1 107,349 + MPMX19_06338 0.50 +0.0 107,349 + MPMX19_06338 0.50 +0.3 107,349 + MPMX19_06338 0.50 -0.0 107,349 + MPMX19_06338 0.50 -0.6 107,349 + MPMX19_06338 0.50 +1.2 107,349 + MPMX19_06338 0.50 -1.1 107,350 - MPMX19_06338 0.50 +1.2 107,350 - MPMX19_06338 0.50 +0.2 107,350 - MPMX19_06338 0.50 -1.5 107,350 - MPMX19_06338 0.50 +0.2 107,350 - MPMX19_06338 0.50 -1.8 107,350 - MPMX19_06338 0.50 +1.3 107,361 + MPMX19_06338 0.51 +1.7 107,361 + MPMX19_06338 0.51 -0.3 107,361 + MPMX19_06338 0.51 -0.1 107,361 + MPMX19_06338 0.51 -0.8 107,361 + MPMX19_06338 0.51 +0.1 107,361 + MPMX19_06338 0.51 +0.0 107,361 + MPMX19_06338 0.51 +0.9 107,362 - MPMX19_06338 0.51 -0.6 107,362 - MPMX19_06338 0.51 +1.9 107,362 - MPMX19_06338 0.51 +1.1 107,362 - MPMX19_06338 0.51 -1.4 107,362 - MPMX19_06338 0.51 -0.6 107,362 - MPMX19_06338 0.51 -1.1 107,362 - MPMX19_06338 0.51 -1.3 107,362 - MPMX19_06338 0.51 -0.5 107,433 + MPMX19_06338 0.59 -0.2 107,434 - MPMX19_06338 0.59 +0.8 107,478 + MPMX19_06338 0.63 +1.9 107,478 + MPMX19_06338 0.63 -0.2 107,478 + MPMX19_06338 0.63 +0.6 107,479 - MPMX19_06338 0.63 -0.1 107,479 - MPMX19_06338 0.63 -0.6 107,479 - MPMX19_06338 0.63 +0.2 107,520 + MPMX19_06338 0.68 -1.2 107,520 + MPMX19_06338 0.68 +0.7 107,520 + MPMX19_06338 0.68 -0.1 107,520 + MPMX19_06338 0.68 -0.3 107,521 - MPMX19_06338 0.68 -0.7 107,521 - MPMX19_06338 0.68 +1.0 107,521 - MPMX19_06338 0.68 +0.0 107,521 - MPMX19_06338 0.68 -0.1 107,521 - MPMX19_06338 0.68 +1.1 107,521 - MPMX19_06338 0.68 +0.7 107,521 - MPMX19_06338 0.68 -0.8 107,547 + MPMX19_06338 0.70 -0.9 107,547 + MPMX19_06338 0.70 -0.6 107,547 + MPMX19_06338 0.70 +0.1 107,547 + MPMX19_06338 0.70 -1.6 107,547 + MPMX19_06338 0.70 -0.5 107,547 + MPMX19_06338 0.70 -0.0 107,698 + MPMX19_06338 0.86 -0.5 107,699 - MPMX19_06338 0.86 -0.4 107,699 - MPMX19_06338 0.86 -0.3 107,699 - MPMX19_06338 0.86 +0.7 107,805 + -0.6 107,805 + +0.4 107,805 + -0.6 108,087 + +0.2 108,087 + +0.4 108,088 - -1.8 108,088 - -0.1 108,130 + +0.1 108,130 + -1.0 108,172 + -0.9 108,172 + +1.0 108,173 - +0.8 108,173 - -2.0 108,173 - -0.8 108,173 - -0.3 108,175 + +0.1 108,175 + +2.5 108,319 + MPMX19_06340 0.37 -0.5 108,319 + MPMX19_06340 0.37 -2.4 108,320 - MPMX19_06340 0.37 -0.9 108,344 + MPMX19_06340 0.53 +1.0 108,344 + MPMX19_06340 0.53 -1.0 108,345 - MPMX19_06340 0.54 -2.0 108,345 - MPMX19_06340 0.54 -0.1 108,345 - MPMX19_06340 0.54 -0.8 108,348 + MPMX19_06340 0.56 +0.9 108,349 - MPMX19_06340 0.57 -0.6 108,485 + -1.9 108,485 + -1.3 108,485 + -0.5 108,486 - -0.9 108,486 - -1.3 108,606 + MPMX19_06341 0.34 -0.9 108,606 + MPMX19_06341 0.34 -0.1 108,606 + MPMX19_06341 0.34 +0.3 108,606 + MPMX19_06341 0.34 +0.7 108,606 + MPMX19_06341 0.34 -2.2 108,606 + MPMX19_06341 0.34 +0.2 108,606 + MPMX19_06341 0.34 +0.4 108,606 + MPMX19_06341 0.34 -0.5 108,607 - MPMX19_06341 0.34 -0.5 108,607 - MPMX19_06341 0.34 +0.7 108,607 - MPMX19_06341 0.34 -0.1 108,607 - MPMX19_06341 0.34 +0.7 108,607 - MPMX19_06341 0.34 -0.6 108,607 - MPMX19_06341 0.34 -0.0 108,607 - MPMX19_06341 0.34 +0.2 108,607 - MPMX19_06341 0.34 -0.6 108,825 - -1.2
Or see this region's nucleotide sequence