Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06331 and MPMX19_06332 overlap by 4 nucleotides MPMX19_06332 and MPMX19_06333 overlap by 14 nucleotides
MPMX19_06331: MPMX19_06331 - hypothetical protein, at 98,178 to 99,077
_06331
MPMX19_06332: MPMX19_06332 - hypothetical protein, at 99,074 to 100,543
_06332
MPMX19_06333: MPMX19_06333 - Regulatory protein AtoC, at 100,530 to 101,867
_06333
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.103 kb on - strand at 98.373 kb on + strand, within MPMX19_06331 at 98.373 kb on + strand, within MPMX19_06331 at 98.374 kb on - strand, within MPMX19_06331 at 98.374 kb on - strand, within MPMX19_06331 at 98.424 kb on + strand, within MPMX19_06331 at 98.425 kb on - strand, within MPMX19_06331 at 98.425 kb on - strand, within MPMX19_06331 at 98.490 kb on + strand, within MPMX19_06331 at 98.490 kb on + strand, within MPMX19_06331 at 98.491 kb on - strand, within MPMX19_06331 at 98.491 kb on - strand, within MPMX19_06331 at 98.553 kb on + strand, within MPMX19_06331 at 98.553 kb on + strand, within MPMX19_06331 at 98.554 kb on - strand, within MPMX19_06331 at 98.554 kb on - strand, within MPMX19_06331 at 98.554 kb on - strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.562 kb on + strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.563 kb on - strand, within MPMX19_06331 at 98.730 kb on + strand, within MPMX19_06331 at 98.730 kb on + strand, within MPMX19_06331 at 98.730 kb on + strand, within MPMX19_06331 at 98.730 kb on + strand, within MPMX19_06331 at 98.731 kb on - strand, within MPMX19_06331 at 98.731 kb on - strand, within MPMX19_06331 at 98.731 kb on - strand, within MPMX19_06331 at 98.731 kb on - strand, within MPMX19_06331 at 98.731 kb on - strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.796 kb on + strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 98.797 kb on - strand, within MPMX19_06331 at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.170 kb on + strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.171 kb on - strand at 99.404 kb on + strand, within MPMX19_06332 at 99.404 kb on + strand, within MPMX19_06332 at 99.648 kb on - strand, within MPMX19_06332 at 99.743 kb on + strand, within MPMX19_06332 at 99.743 kb on + strand, within MPMX19_06332 at 99.744 kb on - strand, within MPMX19_06332 at 99.779 kb on + strand, within MPMX19_06332 at 99.780 kb on - strand, within MPMX19_06332 at 99.938 kb on - strand, within MPMX19_06332 at 100.046 kb on + strand, within MPMX19_06332 at 100.046 kb on + strand, within MPMX19_06332 at 100.046 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.107 kb on + strand, within MPMX19_06332 at 100.108 kb on - strand, within MPMX19_06332 at 100.108 kb on - strand, within MPMX19_06332 at 100.398 kb on + strand at 100.399 kb on - strand at 100.399 kb on - strand at 100.399 kb on - strand at 100.399 kb on - strand at 100.399 kb on - strand at 100.620 kb on + strand at 100.620 kb on + strand at 100.620 kb on + strand at 100.620 kb on + strand at 100.620 kb on + strand at 100.621 kb on - strand at 100.621 kb on - strand at 100.621 kb on - strand at 100.621 kb on - strand at 100.621 kb on - strand at 100.621 kb on - strand at 100.839 kb on + strand, within MPMX19_06333 at 100.839 kb on + strand, within MPMX19_06333 at 100.839 kb on + strand, within MPMX19_06333 at 100.839 kb on + strand, within MPMX19_06333 at 101.400 kb on + strand, within MPMX19_06333 at 101.400 kb on + strand, within MPMX19_06333 at 101.400 kb on + strand, within MPMX19_06333 at 101.400 kb on + strand, within MPMX19_06333 at 101.401 kb on - strand, within MPMX19_06333 at 101.401 kb on - strand, within MPMX19_06333 at 101.401 kb on - strand, within MPMX19_06333 at 101.401 kb on - strand, within MPMX19_06333 at 101.401 kb on - strand, within MPMX19_06333 at 101.481 kb on + strand, within MPMX19_06333 at 101.481 kb on + strand, within MPMX19_06333 at 101.481 kb on + strand, within MPMX19_06333 at 101.482 kb on - strand, within MPMX19_06333 at 101.482 kb on - strand, within MPMX19_06333 at 101.482 kb on - strand, within MPMX19_06333 at 101.482 kb on - strand, within MPMX19_06333 at 101.493 kb on + strand, within MPMX19_06333 at 101.493 kb on + strand, within MPMX19_06333
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 98,103 - -0.6 98,373 + MPMX19_06331 0.22 +0.8 98,373 + MPMX19_06331 0.22 -0.8 98,374 - MPMX19_06331 0.22 +0.4 98,374 - MPMX19_06331 0.22 +0.1 98,424 + MPMX19_06331 0.27 -0.1 98,425 - MPMX19_06331 0.27 -0.8 98,425 - MPMX19_06331 0.27 -0.9 98,490 + MPMX19_06331 0.35 -0.2 98,490 + MPMX19_06331 0.35 +0.2 98,491 - MPMX19_06331 0.35 +0.2 98,491 - MPMX19_06331 0.35 -1.3 98,553 + MPMX19_06331 0.42 -0.6 98,553 + MPMX19_06331 0.42 -1.8 98,554 - MPMX19_06331 0.42 -0.1 98,554 - MPMX19_06331 0.42 +0.3 98,554 - MPMX19_06331 0.42 -0.7 98,562 + MPMX19_06331 0.43 -0.1 98,562 + MPMX19_06331 0.43 -1.2 98,562 + MPMX19_06331 0.43 -2.5 98,562 + MPMX19_06331 0.43 -0.1 98,562 + MPMX19_06331 0.43 -0.3 98,562 + MPMX19_06331 0.43 +1.7 98,562 + MPMX19_06331 0.43 -0.2 98,562 + MPMX19_06331 0.43 +0.3 98,562 + MPMX19_06331 0.43 -0.8 98,562 + MPMX19_06331 0.43 +0.5 98,562 + MPMX19_06331 0.43 -0.8 98,562 + MPMX19_06331 0.43 -1.1 98,562 + MPMX19_06331 0.43 +0.7 98,562 + MPMX19_06331 0.43 -0.8 98,562 + MPMX19_06331 0.43 +0.0 98,562 + MPMX19_06331 0.43 +0.1 98,562 + MPMX19_06331 0.43 -1.6 98,562 + MPMX19_06331 0.43 +0.5 98,563 - MPMX19_06331 0.43 -1.2 98,563 - MPMX19_06331 0.43 -1.5 98,563 - MPMX19_06331 0.43 -0.1 98,563 - MPMX19_06331 0.43 +1.1 98,563 - MPMX19_06331 0.43 +0.1 98,563 - MPMX19_06331 0.43 +0.0 98,563 - MPMX19_06331 0.43 -0.4 98,563 - MPMX19_06331 0.43 -1.8 98,563 - MPMX19_06331 0.43 -0.6 98,563 - MPMX19_06331 0.43 +0.7 98,563 - MPMX19_06331 0.43 -0.2 98,563 - MPMX19_06331 0.43 +1.5 98,563 - MPMX19_06331 0.43 -0.3 98,563 - MPMX19_06331 0.43 -2.2 98,563 - MPMX19_06331 0.43 -0.6 98,563 - MPMX19_06331 0.43 -1.2 98,563 - MPMX19_06331 0.43 +1.7 98,563 - MPMX19_06331 0.43 -0.3 98,563 - MPMX19_06331 0.43 +1.7 98,563 - MPMX19_06331 0.43 -0.3 98,563 - MPMX19_06331 0.43 -1.0 98,563 - MPMX19_06331 0.43 +0.1 98,730 + MPMX19_06331 0.61 +0.2 98,730 + MPMX19_06331 0.61 -0.1 98,730 + MPMX19_06331 0.61 -0.6 98,730 + MPMX19_06331 0.61 -0.5 98,731 - MPMX19_06331 0.61 +0.9 98,731 - MPMX19_06331 0.61 +0.8 98,731 - MPMX19_06331 0.61 -1.1 98,731 - MPMX19_06331 0.61 -0.3 98,731 - MPMX19_06331 0.61 -0.3 98,796 + MPMX19_06331 0.69 -0.7 98,796 + MPMX19_06331 0.69 -1.3 98,796 + MPMX19_06331 0.69 +0.2 98,796 + MPMX19_06331 0.69 +0.1 98,796 + MPMX19_06331 0.69 +0.5 98,796 + MPMX19_06331 0.69 +1.1 98,796 + MPMX19_06331 0.69 +0.9 98,796 + MPMX19_06331 0.69 -0.0 98,797 - MPMX19_06331 0.69 -0.5 98,797 - MPMX19_06331 0.69 +0.7 98,797 - MPMX19_06331 0.69 -1.1 98,797 - MPMX19_06331 0.69 -1.0 98,797 - MPMX19_06331 0.69 -0.2 98,797 - MPMX19_06331 0.69 +0.7 98,797 - MPMX19_06331 0.69 -0.1 98,797 - MPMX19_06331 0.69 +0.4 98,797 - MPMX19_06331 0.69 +0.1 99,170 + -1.3 99,170 + +0.3 99,170 + +0.6 99,170 + -1.8 99,170 + -0.5 99,170 + +0.3 99,170 + +2.0 99,170 + +1.0 99,171 - +0.7 99,171 - -1.3 99,171 - -1.3 99,171 - +0.2 99,171 - -0.2 99,171 - -0.7 99,171 - +0.0 99,171 - -0.6 99,404 + MPMX19_06332 0.22 +0.2 99,404 + MPMX19_06332 0.22 +1.0 99,648 - MPMX19_06332 0.39 +1.2 99,743 + MPMX19_06332 0.46 -0.4 99,743 + MPMX19_06332 0.46 +0.2 99,744 - MPMX19_06332 0.46 +0.7 99,779 + MPMX19_06332 0.48 +0.3 99,780 - MPMX19_06332 0.48 -1.0 99,938 - MPMX19_06332 0.59 -0.9 100,046 + MPMX19_06332 0.66 +0.2 100,046 + MPMX19_06332 0.66 -0.5 100,046 + MPMX19_06332 0.66 +2.2 100,107 + MPMX19_06332 0.70 -0.9 100,107 + MPMX19_06332 0.70 -0.5 100,107 + MPMX19_06332 0.70 +1.2 100,107 + MPMX19_06332 0.70 +0.0 100,107 + MPMX19_06332 0.70 -0.0 100,107 + MPMX19_06332 0.70 -0.9 100,108 - MPMX19_06332 0.70 +0.4 100,108 - MPMX19_06332 0.70 -1.0 100,398 + -0.6 100,399 - -1.2 100,399 - -0.1 100,399 - -0.5 100,399 - -0.3 100,399 - -1.7 100,620 + -0.4 100,620 + -0.1 100,620 + -0.2 100,620 + -1.6 100,620 + -0.8 100,621 - +0.8 100,621 - +0.9 100,621 - -1.5 100,621 - -0.8 100,621 - -0.4 100,621 - -0.3 100,839 + MPMX19_06333 0.23 +0.2 100,839 + MPMX19_06333 0.23 +1.0 100,839 + MPMX19_06333 0.23 +0.1 100,839 + MPMX19_06333 0.23 +0.1 101,400 + MPMX19_06333 0.65 +0.1 101,400 + MPMX19_06333 0.65 -0.6 101,400 + MPMX19_06333 0.65 -1.1 101,400 + MPMX19_06333 0.65 -0.6 101,401 - MPMX19_06333 0.65 -1.6 101,401 - MPMX19_06333 0.65 +0.8 101,401 - MPMX19_06333 0.65 -1.0 101,401 - MPMX19_06333 0.65 -0.2 101,401 - MPMX19_06333 0.65 +0.2 101,481 + MPMX19_06333 0.71 -1.8 101,481 + MPMX19_06333 0.71 +0.1 101,481 + MPMX19_06333 0.71 -1.1 101,482 - MPMX19_06333 0.71 -0.6 101,482 - MPMX19_06333 0.71 -0.1 101,482 - MPMX19_06333 0.71 -0.8 101,482 - MPMX19_06333 0.71 -0.5 101,493 + MPMX19_06333 0.72 +0.4 101,493 + MPMX19_06333 0.72 +0.8
Or see this region's nucleotide sequence