Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06315

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06313 and MPMX19_06314 are separated by 179 nucleotidesMPMX19_06314 and MPMX19_06315 are separated by 275 nucleotidesMPMX19_06315 and MPMX19_06316 are separated by 213 nucleotides MPMX19_06313: MPMX19_06313 - hypothetical protein, at 75,542 to 76,006 _06313 MPMX19_06314: MPMX19_06314 - hypothetical protein, at 76,186 to 76,656 _06314 MPMX19_06315: MPMX19_06315 - ISL3 family transposase ISAli18, at 76,932 to 77,318 _06315 MPMX19_06316: MPMX19_06316 - hypothetical protein, at 77,532 to 78,440 _06316 Position (kb) 76 77 78Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 75.936 kb on - strand, within MPMX19_06313at 76.146 kb on + strandat 76.146 kb on + strandat 76.146 kb on + strandat 76.147 kb on - strandat 76.147 kb on - strandat 76.178 kb on + strandat 76.178 kb on + strandat 76.179 kb on - strandat 76.179 kb on - strandat 76.179 kb on - strandat 76.403 kb on - strand, within MPMX19_06314at 76.420 kb on + strand, within MPMX19_06314at 76.421 kb on - strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.526 kb on - strand, within MPMX19_06314at 76.526 kb on - strand, within MPMX19_06314at 76.526 kb on - strand, within MPMX19_06314at 76.526 kb on - strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.600 kb on + strand, within MPMX19_06314at 76.601 kb on - strand, within MPMX19_06314at 76.789 kb on - strandat 76.814 kb on + strandat 76.814 kb on + strandat 76.814 kb on + strandat 76.814 kb on + strandat 76.814 kb on + strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 77.221 kb on + strand, within MPMX19_06315at 77.221 kb on + strand, within MPMX19_06315at 77.221 kb on + strand, within MPMX19_06315at 77.222 kb on - strand, within MPMX19_06315at 77.488 kb on + strandat 77.488 kb on + strandat 77.489 kb on - strandat 77.661 kb on + strand, within MPMX19_06316at 77.661 kb on + strand, within MPMX19_06316at 77.745 kb on + strand, within MPMX19_06316at 77.745 kb on + strand, within MPMX19_06316at 77.745 kb on + strand, within MPMX19_06316at 77.746 kb on - strand, within MPMX19_06316at 77.746 kb on - strand, within MPMX19_06316at 77.746 kb on - strand, within MPMX19_06316at 77.746 kb on - strand, within MPMX19_06316at 77.746 kb on - strand, within MPMX19_06316at 77.994 kb on + strand, within MPMX19_06316at 77.994 kb on + strand, within MPMX19_06316at 77.994 kb on + strand, within MPMX19_06316at 77.995 kb on - strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.027 kb on + strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.028 kb on - strand, within MPMX19_06316at 78.206 kb on + strand, within MPMX19_06316at 78.206 kb on + strand, within MPMX19_06316at 78.206 kb on + strand, within MPMX19_06316

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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75,936 - MPMX19_06313 0.85 -1.4
76,146 + +2.0
76,146 + -1.1
76,146 + -1.3
76,147 - -1.2
76,147 - -1.0
76,178 + +1.0
76,178 + -1.7
76,179 - +0.1
76,179 - -0.0
76,179 - -0.5
76,403 - MPMX19_06314 0.46 +0.4
76,420 + MPMX19_06314 0.50 -1.6
76,421 - MPMX19_06314 0.50 +1.2
76,525 + MPMX19_06314 0.72 -1.3
76,525 + MPMX19_06314 0.72 +2.5
76,525 + MPMX19_06314 0.72 -1.4
76,525 + MPMX19_06314 0.72 -1.1
76,525 + MPMX19_06314 0.72 -1.9
76,525 + MPMX19_06314 0.72 -0.7
76,526 - MPMX19_06314 0.72 -0.7
76,526 - MPMX19_06314 0.72 +0.2
76,526 - MPMX19_06314 0.72 -1.8
76,526 - MPMX19_06314 0.72 -1.1
76,585 + MPMX19_06314 0.85 -0.6
76,585 + MPMX19_06314 0.85 -1.6
76,585 + MPMX19_06314 0.85 +0.4
76,585 + MPMX19_06314 0.85 -1.1
76,585 + MPMX19_06314 0.85 -1.0
76,585 + MPMX19_06314 0.85 -0.3
76,585 + MPMX19_06314 0.85 -0.1
76,585 + MPMX19_06314 0.85 -2.0
76,585 + MPMX19_06314 0.85 -0.1
76,585 + MPMX19_06314 0.85 -1.1
76,585 + MPMX19_06314 0.85 +0.9
76,585 + MPMX19_06314 0.85 +0.1
76,585 + MPMX19_06314 0.85 -1.9
76,585 + MPMX19_06314 0.85 -0.3
76,586 - MPMX19_06314 0.85 +0.8
76,586 - MPMX19_06314 0.85 +0.4
76,586 - MPMX19_06314 0.85 -1.1
76,586 - MPMX19_06314 0.85 -0.3
76,586 - MPMX19_06314 0.85 -0.9
76,586 - MPMX19_06314 0.85 -1.1
76,586 - MPMX19_06314 0.85 -0.1
76,586 - MPMX19_06314 0.85 +0.2
76,586 - MPMX19_06314 0.85 +0.4
76,600 + MPMX19_06314 0.88 -1.8
76,601 - MPMX19_06314 0.88 -1.2
76,789 - +1.0
76,814 + +0.7
76,814 + -0.9
76,814 + -0.1
76,814 + -0.2
76,814 + -0.3
76,815 - -1.5
76,815 - -3.2
76,815 - -1.4
76,815 - -1.9
76,815 - -0.5
76,815 - -0.8
76,815 - -0.0
76,815 - +0.2
76,815 - -1.1
77,221 + MPMX19_06315 0.75 -2.4
77,221 + MPMX19_06315 0.75 -0.5
77,221 + MPMX19_06315 0.75 +0.2
77,222 - MPMX19_06315 0.75 -0.8
77,488 + -2.2
77,488 + -1.1
77,489 - -1.0
77,661 + MPMX19_06316 0.14 +0.7
77,661 + MPMX19_06316 0.14 -0.9
77,745 + MPMX19_06316 0.23 -0.3
77,745 + MPMX19_06316 0.23 +0.1
77,745 + MPMX19_06316 0.23 +1.8
77,746 - MPMX19_06316 0.24 -1.6
77,746 - MPMX19_06316 0.24 -0.4
77,746 - MPMX19_06316 0.24 +0.8
77,746 - MPMX19_06316 0.24 -0.8
77,746 - MPMX19_06316 0.24 -0.3
77,994 + MPMX19_06316 0.51 -0.6
77,994 + MPMX19_06316 0.51 -0.9
77,994 + MPMX19_06316 0.51 -1.7
77,995 - MPMX19_06316 0.51 +0.6
78,027 + MPMX19_06316 0.54 -0.6
78,027 + MPMX19_06316 0.54 +0.2
78,027 + MPMX19_06316 0.54 +0.1
78,027 + MPMX19_06316 0.54 -0.2
78,027 + MPMX19_06316 0.54 +0.2
78,027 + MPMX19_06316 0.54 +0.6
78,027 + MPMX19_06316 0.54 +0.4
78,027 + MPMX19_06316 0.54 -1.4
78,027 + MPMX19_06316 0.54 -1.1
78,027 + MPMX19_06316 0.54 -1.1
78,027 + MPMX19_06316 0.54 -0.8
78,027 + MPMX19_06316 0.54 -0.6
78,027 + MPMX19_06316 0.54 -0.6
78,027 + MPMX19_06316 0.54 -0.5
78,027 + MPMX19_06316 0.54 -0.2
78,027 + MPMX19_06316 0.54 -1.4
78,027 + MPMX19_06316 0.54 +0.4
78,027 + MPMX19_06316 0.54 -1.6
78,027 + MPMX19_06316 0.54 -0.7
78,027 + MPMX19_06316 0.54 -0.7
78,027 + MPMX19_06316 0.54 -0.4
78,027 + MPMX19_06316 0.54 -0.3
78,027 + MPMX19_06316 0.54 -0.2
78,027 + MPMX19_06316 0.54 -1.5
78,027 + MPMX19_06316 0.54 -0.8
78,027 + MPMX19_06316 0.54 -0.9
78,027 + MPMX19_06316 0.54 -1.2
78,027 + MPMX19_06316 0.54 -0.9
78,027 + MPMX19_06316 0.54 -2.0
78,027 + MPMX19_06316 0.54 -2.1
78,027 + MPMX19_06316 0.54 -0.8
78,027 + MPMX19_06316 0.54 -0.8
78,027 + MPMX19_06316 0.54 -1.9
78,028 - MPMX19_06316 0.55 -0.3
78,028 - MPMX19_06316 0.55 -1.4
78,028 - MPMX19_06316 0.55 -1.3
78,028 - MPMX19_06316 0.55 -1.6
78,028 - MPMX19_06316 0.55 -0.2
78,028 - MPMX19_06316 0.55 -3.5
78,028 - MPMX19_06316 0.55 -1.4
78,028 - MPMX19_06316 0.55 -1.2
78,028 - MPMX19_06316 0.55 -1.1
78,028 - MPMX19_06316 0.55 -0.1
78,028 - MPMX19_06316 0.55 -1.7
78,028 - MPMX19_06316 0.55 -2.5
78,206 + MPMX19_06316 0.74 +0.1
78,206 + MPMX19_06316 0.74 -0.6
78,206 + MPMX19_06316 0.74 +0.1

Or see this region's nucleotide sequence