Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06314

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06312 and MPMX19_06313 are separated by 193 nucleotidesMPMX19_06313 and MPMX19_06314 are separated by 179 nucleotidesMPMX19_06314 and MPMX19_06315 are separated by 275 nucleotidesMPMX19_06315 and MPMX19_06316 are separated by 213 nucleotides MPMX19_06312: MPMX19_06312 - hypothetical protein, at 75,058 to 75,348 _06312 MPMX19_06313: MPMX19_06313 - hypothetical protein, at 75,542 to 76,006 _06313 MPMX19_06314: MPMX19_06314 - hypothetical protein, at 76,186 to 76,656 _06314 MPMX19_06315: MPMX19_06315 - ISL3 family transposase ISAli18, at 76,932 to 77,318 _06315 MPMX19_06316: MPMX19_06316 - hypothetical protein, at 77,532 to 78,440 _06316 Position (kb) 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 75.410 kb on - strandat 75.503 kb on + strandat 75.503 kb on + strandat 75.503 kb on + strandat 75.503 kb on + strandat 75.504 kb on - strandat 75.509 kb on + strandat 75.509 kb on + strandat 75.509 kb on + strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.662 kb on + strand, within MPMX19_06313at 75.663 kb on - strand, within MPMX19_06313at 75.663 kb on - strand, within MPMX19_06313at 75.936 kb on - strand, within MPMX19_06313at 76.146 kb on + strandat 76.146 kb on + strandat 76.146 kb on + strandat 76.147 kb on - strandat 76.147 kb on - strandat 76.178 kb on + strandat 76.178 kb on + strandat 76.179 kb on - strandat 76.179 kb on - strandat 76.179 kb on - strandat 76.403 kb on - strand, within MPMX19_06314at 76.420 kb on + strand, within MPMX19_06314at 76.421 kb on - strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.525 kb on + strand, within MPMX19_06314at 76.526 kb on - strand, within MPMX19_06314at 76.526 kb on - strand, within MPMX19_06314at 76.526 kb on - strand, within MPMX19_06314at 76.526 kb on - strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.585 kb on + strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.586 kb on - strand, within MPMX19_06314at 76.600 kb on + strand, within MPMX19_06314at 76.601 kb on - strand, within MPMX19_06314at 76.789 kb on - strandat 76.814 kb on + strandat 76.814 kb on + strandat 76.814 kb on + strandat 76.814 kb on + strandat 76.814 kb on + strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 76.815 kb on - strandat 77.221 kb on + strand, within MPMX19_06315at 77.221 kb on + strand, within MPMX19_06315at 77.221 kb on + strand, within MPMX19_06315at 77.222 kb on - strand, within MPMX19_06315at 77.488 kb on + strandat 77.488 kb on + strandat 77.489 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
75,410 - -0.7
75,503 + -1.5
75,503 + +0.1
75,503 + +0.7
75,503 + -1.4
75,504 - +0.5
75,509 + -0.4
75,509 + +0.6
75,509 + -0.0
75,510 - -0.5
75,510 - -0.5
75,510 - +0.0
75,510 - +0.4
75,510 - +2.2
75,510 - -0.8
75,601 + MPMX19_06313 0.13 -1.3
75,601 + MPMX19_06313 0.13 +0.8
75,601 + MPMX19_06313 0.13 -0.8
75,601 + MPMX19_06313 0.13 -0.6
75,601 + MPMX19_06313 0.13 -0.3
75,601 + MPMX19_06313 0.13 -0.3
75,601 + MPMX19_06313 0.13 +1.6
75,601 + MPMX19_06313 0.13 -0.1
75,601 + MPMX19_06313 0.13 -2.9
75,602 - MPMX19_06313 0.13 +0.2
75,602 - MPMX19_06313 0.13 +1.9
75,602 - MPMX19_06313 0.13 -1.7
75,602 - MPMX19_06313 0.13 -0.3
75,662 + MPMX19_06313 0.26 +0.1
75,663 - MPMX19_06313 0.26 -1.6
75,663 - MPMX19_06313 0.26 -0.7
75,936 - MPMX19_06313 0.85 -1.4
76,146 + +2.0
76,146 + -1.1
76,146 + -1.3
76,147 - -1.2
76,147 - -1.0
76,178 + +1.0
76,178 + -1.7
76,179 - +0.1
76,179 - -0.0
76,179 - -0.5
76,403 - MPMX19_06314 0.46 +0.4
76,420 + MPMX19_06314 0.50 -1.6
76,421 - MPMX19_06314 0.50 +1.2
76,525 + MPMX19_06314 0.72 -1.3
76,525 + MPMX19_06314 0.72 +2.5
76,525 + MPMX19_06314 0.72 -1.4
76,525 + MPMX19_06314 0.72 -1.1
76,525 + MPMX19_06314 0.72 -1.9
76,525 + MPMX19_06314 0.72 -0.7
76,526 - MPMX19_06314 0.72 -0.7
76,526 - MPMX19_06314 0.72 +0.2
76,526 - MPMX19_06314 0.72 -1.8
76,526 - MPMX19_06314 0.72 -1.1
76,585 + MPMX19_06314 0.85 -0.6
76,585 + MPMX19_06314 0.85 -1.6
76,585 + MPMX19_06314 0.85 +0.4
76,585 + MPMX19_06314 0.85 -1.1
76,585 + MPMX19_06314 0.85 -1.0
76,585 + MPMX19_06314 0.85 -0.3
76,585 + MPMX19_06314 0.85 -0.1
76,585 + MPMX19_06314 0.85 -2.0
76,585 + MPMX19_06314 0.85 -0.1
76,585 + MPMX19_06314 0.85 -1.1
76,585 + MPMX19_06314 0.85 +0.9
76,585 + MPMX19_06314 0.85 +0.1
76,585 + MPMX19_06314 0.85 -1.9
76,585 + MPMX19_06314 0.85 -0.3
76,586 - MPMX19_06314 0.85 +0.8
76,586 - MPMX19_06314 0.85 +0.4
76,586 - MPMX19_06314 0.85 -1.1
76,586 - MPMX19_06314 0.85 -0.3
76,586 - MPMX19_06314 0.85 -0.9
76,586 - MPMX19_06314 0.85 -1.1
76,586 - MPMX19_06314 0.85 -0.1
76,586 - MPMX19_06314 0.85 +0.2
76,586 - MPMX19_06314 0.85 +0.4
76,600 + MPMX19_06314 0.88 -1.8
76,601 - MPMX19_06314 0.88 -1.2
76,789 - +1.0
76,814 + +0.7
76,814 + -0.9
76,814 + -0.1
76,814 + -0.2
76,814 + -0.3
76,815 - -1.5
76,815 - -3.2
76,815 - -1.4
76,815 - -1.9
76,815 - -0.5
76,815 - -0.8
76,815 - -0.0
76,815 - +0.2
76,815 - -1.1
77,221 + MPMX19_06315 0.75 -2.4
77,221 + MPMX19_06315 0.75 -0.5
77,221 + MPMX19_06315 0.75 +0.2
77,222 - MPMX19_06315 0.75 -0.8
77,488 + -2.2
77,488 + -1.1
77,489 - -1.0

Or see this region's nucleotide sequence