Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06311

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06309 and MPMX19_06310 are separated by 125 nucleotidesMPMX19_06310 and MPMX19_06311 are separated by 55 nucleotidesMPMX19_06311 and MPMX19_06312 overlap by 4 nucleotidesMPMX19_06312 and MPMX19_06313 are separated by 193 nucleotides MPMX19_06309: MPMX19_06309 - hypothetical protein, at 73,091 to 73,396 _06309 MPMX19_06310: MPMX19_06310 - hypothetical protein, at 73,522 to 73,719 _06310 MPMX19_06311: MPMX19_06311 - Serine/threonine-protein kinase toxin HipA, at 73,775 to 75,061 _06311 MPMX19_06312: MPMX19_06312 - hypothetical protein, at 75,058 to 75,348 _06312 MPMX19_06313: MPMX19_06313 - hypothetical protein, at 75,542 to 76,006 _06313 Position (kb) 73 74 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 72.802 kb on + strandat 72.802 kb on + strandat 72.803 kb on - strandat 72.809 kb on + strandat 72.809 kb on + strandat 73.050 kb on + strandat 73.050 kb on + strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.118 kb on - strandat 73.118 kb on - strandat 73.118 kb on - strandat 73.118 kb on - strandat 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.238 kb on + strand, within MPMX19_06309at 73.246 kb on + strand, within MPMX19_06309at 73.246 kb on + strand, within MPMX19_06309at 73.448 kb on + strandat 73.449 kb on - strandat 73.475 kb on + strandat 73.475 kb on + strandat 73.475 kb on + strandat 73.475 kb on + strandat 73.476 kb on - strandat 73.476 kb on - strandat 73.491 kb on + strandat 73.501 kb on + strandat 73.501 kb on + strandat 73.501 kb on + strandat 73.502 kb on - strandat 73.502 kb on - strandat 73.538 kb on + strandat 73.538 kb on + strandat 73.539 kb on - strandat 73.539 kb on - strandat 73.568 kb on + strand, within MPMX19_06310at 74.112 kb on + strand, within MPMX19_06311at 74.112 kb on + strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.113 kb on - strand, within MPMX19_06311at 74.152 kb on + strand, within MPMX19_06311at 74.152 kb on + strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.153 kb on - strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.157 kb on + strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.158 kb on - strand, within MPMX19_06311at 74.310 kb on + strand, within MPMX19_06311at 74.310 kb on + strand, within MPMX19_06311at 74.310 kb on + strand, within MPMX19_06311at 74.311 kb on - strand, within MPMX19_06311at 74.311 kb on - strand, within MPMX19_06311at 74.415 kb on + strand, within MPMX19_06311at 74.415 kb on + strand, within MPMX19_06311at 74.415 kb on + strand, within MPMX19_06311at 74.415 kb on + strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.416 kb on - strand, within MPMX19_06311at 74.982 kb on + strandat 74.982 kb on + strandat 74.983 kb on - strandat 75.055 kb on + strandat 75.055 kb on + strandat 75.055 kb on + strandat 75.056 kb on - strandat 75.056 kb on - strandat 75.410 kb on - strandat 75.503 kb on + strandat 75.503 kb on + strandat 75.503 kb on + strandat 75.503 kb on + strandat 75.504 kb on - strandat 75.509 kb on + strandat 75.509 kb on + strandat 75.509 kb on + strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.510 kb on - strandat 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.601 kb on + strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.602 kb on - strand, within MPMX19_06313at 75.662 kb on + strand, within MPMX19_06313at 75.663 kb on - strand, within MPMX19_06313at 75.663 kb on - strand, within MPMX19_06313at 75.936 kb on - strand, within MPMX19_06313

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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72,802 + -0.8
72,802 + -0.0
72,803 - -1.8
72,809 + -1.0
72,809 + -1.3
73,050 + -0.2
73,050 + -0.6
73,051 - +0.1
73,051 - -0.0
73,051 - -0.1
73,051 - +0.2
73,051 - -1.1
73,051 - -0.5
73,118 - +0.2
73,118 - -0.8
73,118 - +0.6
73,118 - +0.9
73,188 - MPMX19_06309 0.32 +1.5
73,188 - MPMX19_06309 0.32 -2.0
73,188 - MPMX19_06309 0.32 -2.2
73,188 - MPMX19_06309 0.32 -0.1
73,188 - MPMX19_06309 0.32 +1.4
73,188 - MPMX19_06309 0.32 -0.1
73,188 - MPMX19_06309 0.32 +0.4
73,188 - MPMX19_06309 0.32 +0.1
73,238 + MPMX19_06309 0.48 -0.6
73,246 + MPMX19_06309 0.51 -1.0
73,246 + MPMX19_06309 0.51 -0.8
73,448 + -0.8
73,449 - -1.6
73,475 + +0.2
73,475 + -1.5
73,475 + -0.1
73,475 + -0.9
73,476 - -1.5
73,476 - +0.2
73,491 + -0.7
73,501 + -0.2
73,501 + -2.1
73,501 + -0.1
73,502 - -0.5
73,502 - -1.1
73,538 + -0.9
73,538 + -0.0
73,539 - -0.3
73,539 - +0.8
73,568 + MPMX19_06310 0.23 -0.1
74,112 + MPMX19_06311 0.26 -1.5
74,112 + MPMX19_06311 0.26 -0.8
74,113 - MPMX19_06311 0.26 -0.0
74,113 - MPMX19_06311 0.26 +1.8
74,113 - MPMX19_06311 0.26 +0.7
74,113 - MPMX19_06311 0.26 -1.2
74,152 + MPMX19_06311 0.29 -1.6
74,152 + MPMX19_06311 0.29 +0.9
74,153 - MPMX19_06311 0.29 -1.6
74,153 - MPMX19_06311 0.29 -2.2
74,153 - MPMX19_06311 0.29 -0.0
74,153 - MPMX19_06311 0.29 -0.6
74,153 - MPMX19_06311 0.29 -0.9
74,153 - MPMX19_06311 0.29 -1.1
74,153 - MPMX19_06311 0.29 +0.0
74,157 + MPMX19_06311 0.30 -0.2
74,157 + MPMX19_06311 0.30 +0.1
74,157 + MPMX19_06311 0.30 +0.8
74,157 + MPMX19_06311 0.30 +1.5
74,157 + MPMX19_06311 0.30 -0.6
74,157 + MPMX19_06311 0.30 +0.1
74,157 + MPMX19_06311 0.30 +1.0
74,158 - MPMX19_06311 0.30 -0.4
74,158 - MPMX19_06311 0.30 -0.1
74,158 - MPMX19_06311 0.30 -1.1
74,158 - MPMX19_06311 0.30 -3.2
74,158 - MPMX19_06311 0.30 -0.3
74,158 - MPMX19_06311 0.30 +1.2
74,158 - MPMX19_06311 0.30 -0.1
74,158 - MPMX19_06311 0.30 -2.2
74,158 - MPMX19_06311 0.30 -1.5
74,158 - MPMX19_06311 0.30 -0.9
74,310 + MPMX19_06311 0.42 -0.6
74,310 + MPMX19_06311 0.42 -1.8
74,310 + MPMX19_06311 0.42 -1.2
74,311 - MPMX19_06311 0.42 -0.2
74,311 - MPMX19_06311 0.42 -0.8
74,415 + MPMX19_06311 0.50 -0.3
74,415 + MPMX19_06311 0.50 -0.1
74,415 + MPMX19_06311 0.50 -0.0
74,415 + MPMX19_06311 0.50 -1.2
74,416 - MPMX19_06311 0.50 -0.6
74,416 - MPMX19_06311 0.50 -1.7
74,416 - MPMX19_06311 0.50 +0.3
74,416 - MPMX19_06311 0.50 -1.1
74,416 - MPMX19_06311 0.50 -0.6
74,416 - MPMX19_06311 0.50 -0.8
74,416 - MPMX19_06311 0.50 +0.4
74,416 - MPMX19_06311 0.50 -1.3
74,416 - MPMX19_06311 0.50 +0.7
74,416 - MPMX19_06311 0.50 -0.2
74,982 + +0.4
74,982 + -0.8
74,983 - -0.9
75,055 + +0.7
75,055 + -0.1
75,055 + +0.2
75,056 - -0.9
75,056 - +0.4
75,410 - -0.7
75,503 + -1.5
75,503 + +0.1
75,503 + +0.7
75,503 + -1.4
75,504 - +0.5
75,509 + -0.4
75,509 + +0.6
75,509 + -0.0
75,510 - -0.5
75,510 - -0.5
75,510 - +0.0
75,510 - +0.4
75,510 - +2.2
75,510 - -0.8
75,601 + MPMX19_06313 0.13 -1.3
75,601 + MPMX19_06313 0.13 +0.8
75,601 + MPMX19_06313 0.13 -0.8
75,601 + MPMX19_06313 0.13 -0.6
75,601 + MPMX19_06313 0.13 -0.3
75,601 + MPMX19_06313 0.13 -0.3
75,601 + MPMX19_06313 0.13 +1.6
75,601 + MPMX19_06313 0.13 -0.1
75,601 + MPMX19_06313 0.13 -2.9
75,602 - MPMX19_06313 0.13 +0.2
75,602 - MPMX19_06313 0.13 +1.9
75,602 - MPMX19_06313 0.13 -1.7
75,602 - MPMX19_06313 0.13 -0.3
75,662 + MPMX19_06313 0.26 +0.1
75,663 - MPMX19_06313 0.26 -1.6
75,663 - MPMX19_06313 0.26 -0.7
75,936 - MPMX19_06313 0.85 -1.4

Or see this region's nucleotide sequence