Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06308

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06307 and MPMX19_06308 are separated by 44 nucleotidesMPMX19_06308 and MPMX19_06309 are separated by 590 nucleotides MPMX19_06307: MPMX19_06307 - hypothetical protein, at 70,663 to 71,856 _06307 MPMX19_06308: MPMX19_06308 - hypothetical protein, at 71,901 to 72,500 _06308 MPMX19_06309: MPMX19_06309 - hypothetical protein, at 73,091 to 73,396 _06309 Position (kb) 71 72 73Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 70.972 kb on + strand, within MPMX19_06307at 71.045 kb on - strand, within MPMX19_06307at 71.142 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.228 kb on + strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.229 kb on - strand, within MPMX19_06307at 71.431 kb on + strand, within MPMX19_06307at 71.470 kb on + strand, within MPMX19_06307at 71.471 kb on - strand, within MPMX19_06307at 71.471 kb on - strand, within MPMX19_06307at 71.629 kb on + strand, within MPMX19_06307at 71.629 kb on + strand, within MPMX19_06307at 71.629 kb on + strand, within MPMX19_06307at 71.629 kb on + strand, within MPMX19_06307at 71.630 kb on - strand, within MPMX19_06307at 71.630 kb on - strand, within MPMX19_06307at 71.630 kb on - strand, within MPMX19_06307at 71.630 kb on - strand, within MPMX19_06307at 71.679 kb on + strand, within MPMX19_06307at 71.680 kb on - strand, within MPMX19_06307at 71.914 kb on + strandat 71.915 kb on - strandat 71.915 kb on - strandat 71.915 kb on - strandat 71.924 kb on + strandat 71.924 kb on + strandat 71.924 kb on + strandat 71.924 kb on + strandat 71.925 kb on - strandat 71.925 kb on - strandat 71.925 kb on - strandat 72.026 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.238 kb on + strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.239 kb on - strand, within MPMX19_06308at 72.381 kb on + strand, within MPMX19_06308at 72.381 kb on + strand, within MPMX19_06308at 72.381 kb on + strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.382 kb on - strand, within MPMX19_06308at 72.666 kb on + strandat 72.666 kb on + strandat 72.733 kb on + strandat 72.802 kb on + strandat 72.802 kb on + strandat 72.803 kb on - strandat 72.809 kb on + strandat 72.809 kb on + strandat 73.050 kb on + strandat 73.050 kb on + strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.051 kb on - strandat 73.118 kb on - strandat 73.118 kb on - strandat 73.118 kb on - strandat 73.118 kb on - strandat 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.188 kb on - strand, within MPMX19_06309at 73.238 kb on + strand, within MPMX19_06309at 73.246 kb on + strand, within MPMX19_06309at 73.246 kb on + strand, within MPMX19_06309at 73.448 kb on + strandat 73.449 kb on - strandat 73.475 kb on + strandat 73.475 kb on + strandat 73.475 kb on + strandat 73.475 kb on + strandat 73.476 kb on - strandat 73.476 kb on - strandat 73.491 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
70,972 + MPMX19_06307 0.26 -1.6
71,045 - MPMX19_06307 0.32 +0.2
71,142 + MPMX19_06307 0.40 +0.3
71,228 + MPMX19_06307 0.47 +0.2
71,228 + MPMX19_06307 0.47 +1.1
71,228 + MPMX19_06307 0.47 +0.4
71,228 + MPMX19_06307 0.47 -1.1
71,228 + MPMX19_06307 0.47 +0.4
71,228 + MPMX19_06307 0.47 -0.8
71,228 + MPMX19_06307 0.47 -2.1
71,228 + MPMX19_06307 0.47 -0.0
71,228 + MPMX19_06307 0.47 -2.3
71,228 + MPMX19_06307 0.47 -0.6
71,228 + MPMX19_06307 0.47 -0.3
71,228 + MPMX19_06307 0.47 -1.5
71,228 + MPMX19_06307 0.47 -0.3
71,228 + MPMX19_06307 0.47 -2.3
71,228 + MPMX19_06307 0.47 -0.8
71,228 + MPMX19_06307 0.47 -1.8
71,228 + MPMX19_06307 0.47 -0.2
71,228 + MPMX19_06307 0.47 -0.8
71,228 + MPMX19_06307 0.47 -0.5
71,228 + MPMX19_06307 0.47 +0.5
71,228 + MPMX19_06307 0.47 +1.2
71,228 + MPMX19_06307 0.47 -0.8
71,228 + MPMX19_06307 0.47 -1.8
71,228 + MPMX19_06307 0.47 -0.4
71,228 + MPMX19_06307 0.47 +0.2
71,229 - MPMX19_06307 0.47 +0.8
71,229 - MPMX19_06307 0.47 -1.4
71,229 - MPMX19_06307 0.47 -1.8
71,229 - MPMX19_06307 0.47 -2.8
71,229 - MPMX19_06307 0.47 +0.4
71,229 - MPMX19_06307 0.47 -0.2
71,229 - MPMX19_06307 0.47 -0.4
71,229 - MPMX19_06307 0.47 -0.3
71,229 - MPMX19_06307 0.47 -0.1
71,229 - MPMX19_06307 0.47 +2.2
71,229 - MPMX19_06307 0.47 -0.3
71,431 + MPMX19_06307 0.64 -0.8
71,470 + MPMX19_06307 0.68 +0.7
71,471 - MPMX19_06307 0.68 -0.1
71,471 - MPMX19_06307 0.68 -2.1
71,629 + MPMX19_06307 0.81 +0.5
71,629 + MPMX19_06307 0.81 -0.6
71,629 + MPMX19_06307 0.81 -0.8
71,629 + MPMX19_06307 0.81 -0.6
71,630 - MPMX19_06307 0.81 +0.8
71,630 - MPMX19_06307 0.81 -0.5
71,630 - MPMX19_06307 0.81 -1.1
71,630 - MPMX19_06307 0.81 -0.8
71,679 + MPMX19_06307 0.85 -0.0
71,680 - MPMX19_06307 0.85 +0.5
71,914 + -0.2
71,915 - -0.8
71,915 - -0.3
71,915 - -1.5
71,924 + -1.6
71,924 + -2.5
71,924 + -1.3
71,924 + -0.8
71,925 - -0.5
71,925 - +0.7
71,925 - -0.6
72,026 + MPMX19_06308 0.21 -1.8
72,238 + MPMX19_06308 0.56 -0.2
72,238 + MPMX19_06308 0.56 -3.0
72,238 + MPMX19_06308 0.56 +1.6
72,238 + MPMX19_06308 0.56 -0.8
72,238 + MPMX19_06308 0.56 +0.7
72,238 + MPMX19_06308 0.56 -0.5
72,238 + MPMX19_06308 0.56 -2.3
72,238 + MPMX19_06308 0.56 -1.1
72,238 + MPMX19_06308 0.56 +0.7
72,238 + MPMX19_06308 0.56 -0.2
72,238 + MPMX19_06308 0.56 +0.4
72,238 + MPMX19_06308 0.56 +0.0
72,238 + MPMX19_06308 0.56 -0.6
72,238 + MPMX19_06308 0.56 -1.5
72,238 + MPMX19_06308 0.56 -0.9
72,238 + MPMX19_06308 0.56 +0.4
72,238 + MPMX19_06308 0.56 -1.7
72,238 + MPMX19_06308 0.56 -0.6
72,239 - MPMX19_06308 0.56 +0.8
72,239 - MPMX19_06308 0.56 -0.2
72,239 - MPMX19_06308 0.56 -0.9
72,239 - MPMX19_06308 0.56 -0.7
72,239 - MPMX19_06308 0.56 +0.1
72,239 - MPMX19_06308 0.56 -2.2
72,239 - MPMX19_06308 0.56 -2.0
72,239 - MPMX19_06308 0.56 -0.9
72,239 - MPMX19_06308 0.56 -0.9
72,381 + MPMX19_06308 0.80 +0.2
72,381 + MPMX19_06308 0.80 -1.0
72,381 + MPMX19_06308 0.80 -2.0
72,382 - MPMX19_06308 0.80 +0.4
72,382 - MPMX19_06308 0.80 -1.1
72,382 - MPMX19_06308 0.80 -1.1
72,382 - MPMX19_06308 0.80 -0.6
72,382 - MPMX19_06308 0.80 +0.4
72,382 - MPMX19_06308 0.80 -0.1
72,666 + -3.5
72,666 + -1.1
72,733 + -0.9
72,802 + -0.8
72,802 + -0.0
72,803 - -1.8
72,809 + -1.0
72,809 + -1.3
73,050 + -0.2
73,050 + -0.6
73,051 - +0.1
73,051 - -0.0
73,051 - -0.1
73,051 - +0.2
73,051 - -1.1
73,051 - -0.5
73,118 - +0.2
73,118 - -0.8
73,118 - +0.6
73,118 - +0.9
73,188 - MPMX19_06309 0.32 +1.5
73,188 - MPMX19_06309 0.32 -2.0
73,188 - MPMX19_06309 0.32 -2.2
73,188 - MPMX19_06309 0.32 -0.1
73,188 - MPMX19_06309 0.32 +1.4
73,188 - MPMX19_06309 0.32 -0.1
73,188 - MPMX19_06309 0.32 +0.4
73,188 - MPMX19_06309 0.32 +0.1
73,238 + MPMX19_06309 0.48 -0.6
73,246 + MPMX19_06309 0.51 -1.0
73,246 + MPMX19_06309 0.51 -0.8
73,448 + -0.8
73,449 - -1.6
73,475 + +0.2
73,475 + -1.5
73,475 + -0.1
73,475 + -0.9
73,476 - -1.5
73,476 - +0.2
73,491 + -0.7

Or see this region's nucleotide sequence