Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06293 and MPMX19_06294 are separated by 434 nucleotides MPMX19_06294 and MPMX19_06295 are separated by 42 nucleotides MPMX19_06295 and MPMX19_06296 are separated by 95 nucleotides MPMX19_06296 and MPMX19_06297 are separated by 236 nucleotides MPMX19_06297 and MPMX19_06298 are separated by 75 nucleotides
MPMX19_06293: MPMX19_06293 - Sensor histidine kinase RcsC, at 57,295 to 61,923
_06293
MPMX19_06294: MPMX19_06294 - hypothetical protein, at 62,358 to 62,468
_06294
MPMX19_06295: MPMX19_06295 - Sensor kinase CckA, at 62,511 to 63,623
_06295
MPMX19_06296: MPMX19_06296 - hypothetical protein, at 63,719 to 63,970
_06296
MPMX19_06297: MPMX19_06297 - hypothetical protein, at 64,207 to 64,494
_06297
MPMX19_06298: MPMX19_06298 - hypothetical protein, at 64,570 to 64,869
_06298
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 61.670 kb on + strand at 61.670 kb on + strand at 61.670 kb on + strand at 61.670 kb on + strand at 61.671 kb on - strand at 61.671 kb on - strand at 61.671 kb on - strand at 61.930 kb on + strand at 61.930 kb on + strand at 61.930 kb on + strand at 61.930 kb on + strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.931 kb on - strand at 61.993 kb on - strand at 61.993 kb on - strand at 62.062 kb on + strand at 62.062 kb on + strand at 62.062 kb on + strand at 62.062 kb on + strand at 62.063 kb on - strand at 62.063 kb on - strand at 62.063 kb on - strand at 62.063 kb on - strand at 62.063 kb on - strand at 62.065 kb on + strand at 62.065 kb on + strand at 62.066 kb on - strand at 62.092 kb on + strand at 62.092 kb on + strand at 62.092 kb on + strand at 62.093 kb on - strand at 62.093 kb on - strand at 62.093 kb on - strand at 62.093 kb on - strand at 62.093 kb on - strand at 62.101 kb on + strand at 62.102 kb on - strand at 62.102 kb on - strand at 62.139 kb on + strand at 62.191 kb on - strand at 62.221 kb on + strand at 62.222 kb on - strand at 62.245 kb on + strand at 62.246 kb on - strand at 62.246 kb on - strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.590 kb on + strand at 62.591 kb on - strand at 62.591 kb on - strand at 62.591 kb on - strand at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.003 kb on + strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.004 kb on - strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.129 kb on + strand, within MPMX19_06295 at 63.130 kb on - strand, within MPMX19_06295 at 63.130 kb on - strand, within MPMX19_06295 at 63.130 kb on - strand, within MPMX19_06295 at 63.130 kb on - strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.519 kb on + strand at 63.519 kb on + strand at 63.521 kb on + strand at 63.522 kb on - strand at 63.522 kb on - strand at 63.522 kb on - strand at 63.652 kb on + strand at 63.671 kb on - strand at 64.000 kb on + strand at 64.001 kb on - strand at 64.001 kb on - strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.003 kb on - strand at 64.003 kb on - strand at 64.034 kb on - strand at 64.034 kb on - strand at 64.043 kb on + strand at 64.044 kb on - strand at 64.091 kb on - strand at 64.095 kb on + strand at 64.096 kb on - strand at 64.421 kb on + strand, within MPMX19_06297 at 64.422 kb on - strand, within MPMX19_06297 at 64.489 kb on - strand at 64.525 kb on + strand at 64.526 kb on - strand at 64.609 kb on - strand, within MPMX19_06298
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 61,670 + +0.4 61,670 + -0.1 61,670 + +0.0 61,670 + -0.3 61,671 - +0.1 61,671 - -0.3 61,671 - +0.9 61,930 + +0.5 61,930 + +0.5 61,930 + -1.7 61,930 + -1.1 61,931 - -0.2 61,931 - +0.1 61,931 - -0.3 61,931 - -0.0 61,931 - -0.3 61,931 - -2.0 61,931 - -1.6 61,993 - +0.5 61,993 - -0.1 62,062 + -0.9 62,062 + -1.1 62,062 + -0.3 62,062 + -0.1 62,063 - -1.0 62,063 - -1.1 62,063 - +0.4 62,063 - -0.8 62,063 - -0.2 62,065 + -1.2 62,065 + -1.4 62,066 - -0.1 62,092 + -1.6 62,092 + +0.8 62,092 + -1.2 62,093 - +0.9 62,093 - +0.7 62,093 - -1.0 62,093 - -0.7 62,093 - -1.6 62,101 + -1.4 62,102 - -0.5 62,102 - +0.9 62,139 + -2.0 62,191 - +1.8 62,221 + -1.8 62,222 - +1.4 62,245 + +0.0 62,246 - -2.1 62,246 - +1.5 62,590 + -0.3 62,590 + -1.5 62,590 + +1.8 62,590 + +0.4 62,590 + -0.8 62,590 + -1.0 62,590 + +0.5 62,590 + +0.7 62,590 + -0.6 62,591 - -3.6 62,591 - -1.8 62,591 - -1.0 63,003 + MPMX19_06295 0.44 +0.4 63,003 + MPMX19_06295 0.44 -0.8 63,003 + MPMX19_06295 0.44 +0.8 63,003 + MPMX19_06295 0.44 +0.5 63,003 + MPMX19_06295 0.44 -0.8 63,003 + MPMX19_06295 0.44 +0.4 63,003 + MPMX19_06295 0.44 +0.1 63,003 + MPMX19_06295 0.44 -0.2 63,004 - MPMX19_06295 0.44 +0.7 63,004 - MPMX19_06295 0.44 -0.2 63,004 - MPMX19_06295 0.44 -0.9 63,004 - MPMX19_06295 0.44 -1.1 63,004 - MPMX19_06295 0.44 +0.2 63,004 - MPMX19_06295 0.44 +0.9 63,004 - MPMX19_06295 0.44 -0.2 63,004 - MPMX19_06295 0.44 -2.4 63,004 - MPMX19_06295 0.44 -0.5 63,004 - MPMX19_06295 0.44 -2.8 63,004 - MPMX19_06295 0.44 +0.2 63,004 - MPMX19_06295 0.44 -1.1 63,129 + MPMX19_06295 0.56 +0.9 63,129 + MPMX19_06295 0.56 -0.5 63,129 + MPMX19_06295 0.56 -0.7 63,129 + MPMX19_06295 0.56 -0.3 63,129 + MPMX19_06295 0.56 -0.8 63,129 + MPMX19_06295 0.56 +0.9 63,129 + MPMX19_06295 0.56 -1.7 63,129 + MPMX19_06295 0.56 -1.2 63,129 + MPMX19_06295 0.56 +0.1 63,129 + MPMX19_06295 0.56 -1.9 63,129 + MPMX19_06295 0.56 -2.1 63,129 + MPMX19_06295 0.56 -1.4 63,129 + MPMX19_06295 0.56 -1.2 63,129 + MPMX19_06295 0.56 -0.6 63,129 + MPMX19_06295 0.56 -0.3 63,129 + MPMX19_06295 0.56 -2.1 63,130 - MPMX19_06295 0.56 -1.7 63,130 - MPMX19_06295 0.56 -0.9 63,130 - MPMX19_06295 0.56 -0.3 63,130 - MPMX19_06295 0.56 -1.4 63,432 + MPMX19_06295 0.83 -1.2 63,432 + MPMX19_06295 0.83 -0.6 63,432 + MPMX19_06295 0.83 -0.8 63,432 + MPMX19_06295 0.83 -2.3 63,432 + MPMX19_06295 0.83 -0.7 63,432 + MPMX19_06295 0.83 -1.1 63,433 - MPMX19_06295 0.83 +2.2 63,433 - MPMX19_06295 0.83 -1.3 63,433 - MPMX19_06295 0.83 -0.8 63,433 - MPMX19_06295 0.83 -1.9 63,433 - MPMX19_06295 0.83 -1.5 63,433 - MPMX19_06295 0.83 -1.6 63,519 + +0.9 63,519 + -1.6 63,521 + -0.6 63,522 - +0.7 63,522 - -0.6 63,522 - -1.4 63,652 + -0.7 63,671 - -2.9 64,000 + -1.1 64,001 - +0.2 64,001 - +0.7 64,002 + -0.7 64,002 + +1.7 64,002 + -1.2 64,002 + +0.3 64,003 - -0.8 64,003 - -1.4 64,034 - -0.9 64,034 - +0.4 64,043 + -0.6 64,044 - -0.8 64,091 - -0.3 64,095 + -0.3 64,096 - -0.3 64,421 + MPMX19_06297 0.74 -0.8 64,422 - MPMX19_06297 0.75 -0.3 64,489 - +0.7 64,525 + -1.1 64,526 - -0.9 64,609 - MPMX19_06298 0.13 -1.7
Or see this region's nucleotide sequence