Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06279

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06278 and MPMX19_06279 overlap by 11 nucleotidesMPMX19_06279 and MPMX19_06280 are separated by 261 nucleotidesMPMX19_06280 and MPMX19_06281 are separated by 13 nucleotides MPMX19_06278: MPMX19_06278 - S-sulfocysteine synthase, at 26,615 to 27,700 _06278 MPMX19_06279: MPMX19_06279 - L-threonine kinase, at 27,690 to 28,655 _06279 MPMX19_06280: MPMX19_06280 - Leucine-responsive regulatory protein, at 28,917 to 29,390 _06280 MPMX19_06281: MPMX19_06281 - hypothetical protein, at 29,404 to 29,859 _06281 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.814 kb on + strand, within MPMX19_06278at 26.814 kb on + strand, within MPMX19_06278at 26.815 kb on - strand, within MPMX19_06278at 26.815 kb on - strand, within MPMX19_06278at 26.815 kb on - strand, within MPMX19_06278at 26.815 kb on - strand, within MPMX19_06278at 26.892 kb on + strand, within MPMX19_06278at 26.892 kb on + strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.919 kb on + strand, within MPMX19_06278at 26.919 kb on + strand, within MPMX19_06278at 26.920 kb on - strand, within MPMX19_06278at 26.920 kb on - strand, within MPMX19_06278at 26.920 kb on - strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.235 kb on - strand, within MPMX19_06278at 27.235 kb on - strand, within MPMX19_06278at 27.235 kb on - strand, within MPMX19_06278at 27.235 kb on - strand, within MPMX19_06278at 27.235 kb on - strand, within MPMX19_06278at 27.261 kb on + strand, within MPMX19_06278at 27.349 kb on - strand, within MPMX19_06278at 27.349 kb on - strand, within MPMX19_06278at 27.349 kb on - strand, within MPMX19_06278at 27.445 kb on - strand, within MPMX19_06278at 27.445 kb on - strand, within MPMX19_06278at 27.722 kb on + strandat 28.039 kb on + strand, within MPMX19_06279at 28.039 kb on + strand, within MPMX19_06279at 28.040 kb on - strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.570 kb on - strandat 28.570 kb on - strandat 28.570 kb on - strandat 28.570 kb on - strandat 28.687 kb on + strandat 28.700 kb on + strandat 28.701 kb on - strandat 28.732 kb on + strandat 28.732 kb on + strandat 28.732 kb on + strandat 28.732 kb on + strandat 28.732 kb on + strandat 28.732 kb on + strandat 28.736 kb on + strandat 28.737 kb on - strandat 28.737 kb on - strandat 28.737 kb on - strandat 28.795 kb on + strandat 28.813 kb on - strandat 29.217 kb on + strand, within MPMX19_06280at 29.217 kb on + strand, within MPMX19_06280at 29.217 kb on + strand, within MPMX19_06280at 29.217 kb on + strand, within MPMX19_06280at 29.218 kb on - strand, within MPMX19_06280at 29.218 kb on - strand, within MPMX19_06280at 29.218 kb on - strand, within MPMX19_06280at 29.218 kb on - strand, within MPMX19_06280at 29.218 kb on - strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.241 kb on + strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.242 kb on - strand, within MPMX19_06280at 29.304 kb on + strand, within MPMX19_06280at 29.304 kb on + strand, within MPMX19_06280at 29.304 kb on + strand, within MPMX19_06280at 29.304 kb on + strand, within MPMX19_06280at 29.304 kb on + strand, within MPMX19_06280at 29.305 kb on - strand, within MPMX19_06280at 29.411 kb on + strandat 29.411 kb on + strandat 29.411 kb on + strandat 29.411 kb on + strandat 29.411 kb on + strandat 29.412 kb on - strandat 29.412 kb on - strandat 29.412 kb on - strandat 29.462 kb on + strand, within MPMX19_06281at 29.462 kb on + strand, within MPMX19_06281at 29.462 kb on + strand, within MPMX19_06281at 29.463 kb on - strand, within MPMX19_06281at 29.463 kb on - strand, within MPMX19_06281at 29.463 kb on - strand, within MPMX19_06281at 29.638 kb on + strand, within MPMX19_06281

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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26,799 + MPMX19_06278 0.17 -0.9
26,799 + MPMX19_06278 0.17 -2.0
26,799 + MPMX19_06278 0.17 -0.2
26,799 + MPMX19_06278 0.17 -0.7
26,799 + MPMX19_06278 0.17 -0.4
26,799 + MPMX19_06278 0.17 -0.6
26,799 + MPMX19_06278 0.17 -1.1
26,799 + MPMX19_06278 0.17 -0.2
26,799 + MPMX19_06278 0.17 +1.6
26,799 + MPMX19_06278 0.17 -0.1
26,799 + MPMX19_06278 0.17 -1.2
26,799 + MPMX19_06278 0.17 +2.2
26,799 + MPMX19_06278 0.17 -0.2
26,800 - MPMX19_06278 0.17 -0.3
26,800 - MPMX19_06278 0.17 -1.3
26,800 - MPMX19_06278 0.17 -0.8
26,800 - MPMX19_06278 0.17 +0.1
26,800 - MPMX19_06278 0.17 -0.7
26,800 - MPMX19_06278 0.17 -0.8
26,800 - MPMX19_06278 0.17 -0.9
26,800 - MPMX19_06278 0.17 +0.2
26,800 - MPMX19_06278 0.17 +0.2
26,814 + MPMX19_06278 0.18 +0.8
26,814 + MPMX19_06278 0.18 -0.4
26,815 - MPMX19_06278 0.18 -0.3
26,815 - MPMX19_06278 0.18 -0.1
26,815 - MPMX19_06278 0.18 -0.6
26,815 - MPMX19_06278 0.18 +1.1
26,892 + MPMX19_06278 0.26 -0.8
26,892 + MPMX19_06278 0.26 -2.1
26,893 - MPMX19_06278 0.26 +0.6
26,893 - MPMX19_06278 0.26 -0.3
26,893 - MPMX19_06278 0.26 -1.1
26,893 - MPMX19_06278 0.26 -2.1
26,893 - MPMX19_06278 0.26 -1.2
26,893 - MPMX19_06278 0.26 -2.3
26,893 - MPMX19_06278 0.26 -1.2
26,919 + MPMX19_06278 0.28 -0.6
26,919 + MPMX19_06278 0.28 +0.2
26,920 - MPMX19_06278 0.28 -1.0
26,920 - MPMX19_06278 0.28 +0.1
26,920 - MPMX19_06278 0.28 +0.2
27,234 + MPMX19_06278 0.57 -2.7
27,234 + MPMX19_06278 0.57 +0.1
27,234 + MPMX19_06278 0.57 +0.3
27,234 + MPMX19_06278 0.57 -0.6
27,234 + MPMX19_06278 0.57 -0.7
27,234 + MPMX19_06278 0.57 +0.0
27,234 + MPMX19_06278 0.57 -2.3
27,234 + MPMX19_06278 0.57 -1.5
27,235 - MPMX19_06278 0.57 -0.2
27,235 - MPMX19_06278 0.57 -0.5
27,235 - MPMX19_06278 0.57 -1.2
27,235 - MPMX19_06278 0.57 +0.7
27,235 - MPMX19_06278 0.57 +0.8
27,261 + MPMX19_06278 0.59 +0.5
27,349 - MPMX19_06278 0.68 -0.5
27,349 - MPMX19_06278 0.68 -2.3
27,349 - MPMX19_06278 0.68 -0.1
27,445 - MPMX19_06278 0.76 +1.4
27,445 - MPMX19_06278 0.76 -0.3
27,722 + -0.3
28,039 + MPMX19_06279 0.36 +0.5
28,039 + MPMX19_06279 0.36 -0.9
28,040 - MPMX19_06279 0.36 -0.1
28,479 + MPMX19_06279 0.82 -1.3
28,479 + MPMX19_06279 0.82 -0.3
28,479 + MPMX19_06279 0.82 +0.9
28,479 + MPMX19_06279 0.82 -1.1
28,479 + MPMX19_06279 0.82 -0.3
28,479 + MPMX19_06279 0.82 +0.3
28,479 + MPMX19_06279 0.82 -0.4
28,479 + MPMX19_06279 0.82 -0.1
28,479 + MPMX19_06279 0.82 -0.3
28,479 + MPMX19_06279 0.82 +0.9
28,479 + MPMX19_06279 0.82 -2.1
28,479 + MPMX19_06279 0.82 -0.7
28,479 + MPMX19_06279 0.82 -0.6
28,479 + MPMX19_06279 0.82 -2.1
28,479 + MPMX19_06279 0.82 -0.9
28,479 + MPMX19_06279 0.82 -0.8
28,479 + MPMX19_06279 0.82 -0.1
28,480 - MPMX19_06279 0.82 +0.7
28,480 - MPMX19_06279 0.82 +0.2
28,480 - MPMX19_06279 0.82 +0.1
28,480 - MPMX19_06279 0.82 -1.4
28,480 - MPMX19_06279 0.82 -0.1
28,480 - MPMX19_06279 0.82 -0.6
28,480 - MPMX19_06279 0.82 +0.9
28,480 - MPMX19_06279 0.82 +0.2
28,570 - -1.7
28,570 - -0.1
28,570 - -0.1
28,570 - -0.3
28,687 + -1.5
28,700 + -0.6
28,701 - -1.6
28,732 + -1.9
28,732 + -1.0
28,732 + +0.2
28,732 + -0.8
28,732 + -0.8
28,732 + -0.8
28,736 + -1.2
28,737 - -1.0
28,737 - -0.3
28,737 - -1.0
28,795 + -0.9
28,813 - -0.2
29,217 + MPMX19_06280 0.63 -0.6
29,217 + MPMX19_06280 0.63 -1.2
29,217 + MPMX19_06280 0.63 -1.7
29,217 + MPMX19_06280 0.63 -1.1
29,218 - MPMX19_06280 0.64 -0.3
29,218 - MPMX19_06280 0.64 +0.2
29,218 - MPMX19_06280 0.64 +0.2
29,218 - MPMX19_06280 0.64 -0.9
29,218 - MPMX19_06280 0.64 -0.6
29,241 + MPMX19_06280 0.68 +0.4
29,241 + MPMX19_06280 0.68 +2.2
29,241 + MPMX19_06280 0.68 +1.2
29,241 + MPMX19_06280 0.68 -0.1
29,241 + MPMX19_06280 0.68 -0.8
29,241 + MPMX19_06280 0.68 +0.7
29,242 - MPMX19_06280 0.69 +0.2
29,242 - MPMX19_06280 0.69 -0.0
29,242 - MPMX19_06280 0.69 -0.7
29,242 - MPMX19_06280 0.69 -0.1
29,242 - MPMX19_06280 0.69 +0.0
29,242 - MPMX19_06280 0.69 -0.6
29,242 - MPMX19_06280 0.69 -0.9
29,242 - MPMX19_06280 0.69 +0.1
29,242 - MPMX19_06280 0.69 -1.5
29,242 - MPMX19_06280 0.69 +0.1
29,304 + MPMX19_06280 0.82 -0.1
29,304 + MPMX19_06280 0.82 -0.3
29,304 + MPMX19_06280 0.82 -0.9
29,304 + MPMX19_06280 0.82 -0.3
29,304 + MPMX19_06280 0.82 -0.1
29,305 - MPMX19_06280 0.82 -0.0
29,411 + -0.1
29,411 + -1.1
29,411 + -0.3
29,411 + -1.2
29,411 + +0.2
29,412 - +0.2
29,412 - +0.5
29,412 - +0.5
29,462 + MPMX19_06281 0.13 +1.2
29,462 + MPMX19_06281 0.13 -0.3
29,462 + MPMX19_06281 0.13 +0.4
29,463 - MPMX19_06281 0.13 -1.1
29,463 - MPMX19_06281 0.13 -1.3
29,463 - MPMX19_06281 0.13 +0.2
29,638 + MPMX19_06281 0.51 -1.3

Or see this region's nucleotide sequence