Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06266 and MPMX19_06267 are separated by 433 nucleotides MPMX19_06267 and MPMX19_06268 are separated by 92 nucleotides MPMX19_06268 and MPMX19_06269 are separated by 6 nucleotides MPMX19_06269 and MPMX19_06270 are separated by 134 nucleotides
MPMX19_06266: MPMX19_06266 - hypothetical protein, at 17,325 to 17,687
_06266
MPMX19_06267: MPMX19_06267 - hypothetical protein, at 18,121 to 18,384
_06267
MPMX19_06268: MPMX19_06268 - hypothetical protein, at 18,477 to 19,112
_06268
MPMX19_06269: MPMX19_06269 - IS110 family transposase ISHne4, at 19,119 to 19,652
_06269
MPMX19_06270: MPMX19_06270 - hypothetical protein, at 19,787 to 20,014
_06270
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 17.567 kb on + strand, within MPMX19_06266 at 17.921 kb on + strand at 17.922 kb on - strand at 17.922 kb on - strand at 17.995 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.003 kb on + strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.004 kb on - strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.041 kb on + strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.042 kb on - strand at 18.058 kb on - strand at 18.123 kb on - strand at 18.132 kb on + strand at 18.132 kb on + strand at 18.132 kb on + strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.133 kb on - strand at 18.139 kb on - strand at 18.139 kb on - strand at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.218 kb on + strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.219 kb on - strand, within MPMX19_06267 at 18.268 kb on + strand, within MPMX19_06267 at 18.397 kb on - strand at 18.397 kb on - strand at 18.470 kb on + strand at 18.471 kb on - strand at 18.527 kb on + strand at 18.527 kb on + strand at 18.528 kb on - strand at 18.528 kb on - strand at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.560 kb on + strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.561 kb on - strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.727 kb on + strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.728 kb on - strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.763 kb on + strand, within MPMX19_06268 at 18.764 kb on - strand, within MPMX19_06268 at 18.764 kb on - strand, within MPMX19_06268 at 18.886 kb on + strand, within MPMX19_06268 at 18.886 kb on + strand, within MPMX19_06268 at 18.887 kb on - strand, within MPMX19_06268 at 18.887 kb on - strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.889 kb on + strand, within MPMX19_06268 at 18.890 kb on - strand, within MPMX19_06268 at 19.116 kb on + strand at 19.141 kb on + strand at 19.215 kb on - strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.297 kb on + strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.298 kb on - strand, within MPMX19_06269 at 19.316 kb on + strand, within MPMX19_06269 at 19.317 kb on - strand, within MPMX19_06269 at 19.317 kb on - strand, within MPMX19_06269 at 19.380 kb on + strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269 at 19.381 kb on - strand, within MPMX19_06269 at 19.477 kb on - strand, within MPMX19_06269 at 19.482 kb on - strand, within MPMX19_06269 at 19.482 kb on - strand, within MPMX19_06269 at 19.548 kb on + strand, within MPMX19_06269 at 19.548 kb on + strand, within MPMX19_06269 at 19.548 kb on + strand, within MPMX19_06269 at 19.548 kb on + strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.549 kb on - strand, within MPMX19_06269 at 19.748 kb on + strand at 20.012 kb on + strand at 20.012 kb on + strand at 20.051 kb on + strand at 20.051 kb on + strand at 20.051 kb on + strand at 20.051 kb on + strand at 20.051 kb on + strand at 20.052 kb on - strand at 20.052 kb on - strand at 20.052 kb on - strand at 20.053 kb on + strand at 20.053 kb on + strand at 20.053 kb on + strand at 20.053 kb on + strand at 20.054 kb on - strand at 20.054 kb on - strand at 20.054 kb on - strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.066 kb on + strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.067 kb on - strand at 20.075 kb on - strand at 20.075 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 17,567 + MPMX19_06266 0.67 -1.2 17,921 + -0.0 17,922 - +0.4 17,922 - +0.4 17,995 + -0.6 18,003 + -0.3 18,003 + -1.3 18,003 + -0.3 18,003 + -0.8 18,004 - -0.6 18,004 - -0.8 18,004 - -1.3 18,004 - +0.2 18,004 - -0.8 18,004 - +0.5 18,041 + +1.2 18,041 + -1.8 18,041 + -0.6 18,041 + -1.3 18,041 + -0.5 18,041 + -1.7 18,042 - -1.0 18,042 - -1.1 18,042 - -1.2 18,042 - -1.1 18,042 - +0.1 18,058 - +0.4 18,123 - -0.9 18,132 + -0.5 18,132 + -0.7 18,132 + -0.2 18,133 - -0.5 18,133 - -0.7 18,133 - -0.5 18,133 - -0.4 18,133 - +1.1 18,139 - +0.1 18,139 - -1.1 18,218 + MPMX19_06267 0.37 -1.1 18,218 + MPMX19_06267 0.37 +0.4 18,218 + MPMX19_06267 0.37 +0.4 18,218 + MPMX19_06267 0.37 -1.7 18,219 - MPMX19_06267 0.37 -1.2 18,219 - MPMX19_06267 0.37 -0.3 18,219 - MPMX19_06267 0.37 -1.0 18,219 - MPMX19_06267 0.37 -0.7 18,268 + MPMX19_06267 0.56 +0.9 18,397 - -0.3 18,397 - +0.2 18,470 + -0.9 18,471 - -1.8 18,527 + -1.1 18,527 + -0.8 18,528 - -0.4 18,528 - +0.7 18,560 + MPMX19_06268 0.13 -1.3 18,560 + MPMX19_06268 0.13 -1.5 18,560 + MPMX19_06268 0.13 -0.4 18,560 + MPMX19_06268 0.13 -0.9 18,560 + MPMX19_06268 0.13 -1.0 18,560 + MPMX19_06268 0.13 +0.9 18,560 + MPMX19_06268 0.13 -1.1 18,560 + MPMX19_06268 0.13 -0.3 18,560 + MPMX19_06268 0.13 -1.4 18,560 + MPMX19_06268 0.13 +0.7 18,561 - MPMX19_06268 0.13 -0.8 18,561 - MPMX19_06268 0.13 -0.8 18,561 - MPMX19_06268 0.13 +1.2 18,561 - MPMX19_06268 0.13 +0.7 18,727 + MPMX19_06268 0.39 -0.2 18,727 + MPMX19_06268 0.39 -0.3 18,727 + MPMX19_06268 0.39 +0.6 18,727 + MPMX19_06268 0.39 -0.3 18,727 + MPMX19_06268 0.39 -1.1 18,727 + MPMX19_06268 0.39 -1.3 18,728 - MPMX19_06268 0.39 -1.6 18,728 - MPMX19_06268 0.39 -0.5 18,728 - MPMX19_06268 0.39 -0.9 18,728 - MPMX19_06268 0.39 -3.6 18,728 - MPMX19_06268 0.39 +1.2 18,728 - MPMX19_06268 0.39 -0.3 18,763 + MPMX19_06268 0.45 -0.3 18,763 + MPMX19_06268 0.45 -0.7 18,763 + MPMX19_06268 0.45 -0.9 18,764 - MPMX19_06268 0.45 -1.3 18,764 - MPMX19_06268 0.45 -0.3 18,886 + MPMX19_06268 0.64 -0.5 18,886 + MPMX19_06268 0.64 +0.6 18,887 - MPMX19_06268 0.64 -0.4 18,887 - MPMX19_06268 0.64 +0.0 18,889 + MPMX19_06268 0.65 +0.2 18,889 + MPMX19_06268 0.65 -0.2 18,889 + MPMX19_06268 0.65 -0.1 18,890 - MPMX19_06268 0.65 -0.9 19,116 + -1.5 19,141 + -1.1 19,215 - MPMX19_06269 0.18 -0.3 19,297 + MPMX19_06269 0.33 +0.7 19,297 + MPMX19_06269 0.33 +0.0 19,297 + MPMX19_06269 0.33 -0.5 19,297 + MPMX19_06269 0.33 +0.9 19,297 + MPMX19_06269 0.33 -0.3 19,298 - MPMX19_06269 0.34 -0.3 19,298 - MPMX19_06269 0.34 +1.5 19,298 - MPMX19_06269 0.34 +0.1 19,298 - MPMX19_06269 0.34 -0.7 19,298 - MPMX19_06269 0.34 +1.2 19,298 - MPMX19_06269 0.34 +0.4 19,316 + MPMX19_06269 0.37 +0.8 19,317 - MPMX19_06269 0.37 -1.2 19,317 - MPMX19_06269 0.37 +1.2 19,380 + MPMX19_06269 0.49 -1.1 19,381 - MPMX19_06269 0.49 -0.2 19,381 - MPMX19_06269 0.49 -0.1 19,381 - MPMX19_06269 0.49 -0.3 19,477 - MPMX19_06269 0.67 +0.2 19,482 - MPMX19_06269 0.68 -1.1 19,482 - MPMX19_06269 0.68 -2.0 19,548 + MPMX19_06269 0.80 +0.1 19,548 + MPMX19_06269 0.80 +0.9 19,548 + MPMX19_06269 0.80 -0.8 19,548 + MPMX19_06269 0.80 -1.2 19,549 - MPMX19_06269 0.81 -1.9 19,549 - MPMX19_06269 0.81 +1.7 19,549 - MPMX19_06269 0.81 +1.0 19,549 - MPMX19_06269 0.81 -0.6 19,549 - MPMX19_06269 0.81 -0.3 19,549 - MPMX19_06269 0.81 +0.0 19,748 + -1.3 20,012 + -0.3 20,012 + +0.3 20,051 + -0.6 20,051 + -0.2 20,051 + -0.5 20,051 + +0.3 20,051 + -0.4 20,052 - -1.2 20,052 - +0.2 20,052 - -0.3 20,053 + -1.0 20,053 + -0.6 20,053 + +0.1 20,053 + +0.5 20,054 - -0.0 20,054 - -1.6 20,054 - +0.9 20,066 + +0.1 20,066 + -0.4 20,066 + -1.2 20,066 + +1.2 20,066 + -0.1 20,066 + +0.0 20,066 + -0.7 20,066 + -1.5 20,066 + -0.6 20,066 + +0.4 20,066 + -0.5 20,066 + +0.5 20,066 + +0.0 20,066 + -0.4 20,066 + -0.6 20,066 + +1.7 20,066 + +0.0 20,066 + -1.6 20,066 + -0.5 20,067 - +0.6 20,067 - +1.2 20,067 - +1.4 20,067 - -0.6 20,067 - -1.3 20,067 - -0.6 20,067 - -0.9 20,067 - +0.4 20,067 - +0.1 20,067 - +0.1 20,067 - +0.7 20,067 - -0.6 20,067 - -1.8 20,067 - +0.2 20,067 - -0.4 20,067 - -1.9 20,067 - -0.9 20,075 - -1.1 20,075 - -1.3
Or see this region's nucleotide sequence