Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06261 and MPMX19_06262 are separated by 20 nucleotides MPMX19_06262 and MPMX19_06263 overlap by 4 nucleotides MPMX19_06263 and MPMX19_06264 are separated by 48 nucleotides
MPMX19_06261: MPMX19_06261 - hypothetical protein, at 13,556 to 13,984
_06261
MPMX19_06262: MPMX19_06262 - hypothetical protein, at 14,005 to 14,142
_06262
MPMX19_06263: MPMX19_06263 - hypothetical protein, at 14,139 to 14,441
_06263
MPMX19_06264: MPMX19_06264 - hypothetical protein, at 14,490 to 15,215
_06264
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.617 kb on + strand, within MPMX19_06261 at 13.617 kb on + strand, within MPMX19_06261 at 13.618 kb on - strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 14.007 kb on - strand at 14.215 kb on + strand, within MPMX19_06263 at 14.215 kb on + strand, within MPMX19_06263 at 14.215 kb on + strand, within MPMX19_06263 at 14.216 kb on - strand, within MPMX19_06263 at 14.216 kb on - strand, within MPMX19_06263 at 14.281 kb on + strand, within MPMX19_06263 at 14.281 kb on + strand, within MPMX19_06263 at 14.459 kb on + strand at 14.459 kb on + strand at 14.459 kb on + strand at 14.459 kb on + strand at 14.460 kb on - strand at 14.460 kb on - strand at 14.460 kb on - strand at 14.479 kb on + strand at 14.479 kb on + strand at 14.480 kb on - strand at 14.648 kb on + strand, within MPMX19_06264 at 14.648 kb on + strand, within MPMX19_06264 at 14.649 kb on - strand, within MPMX19_06264 at 14.761 kb on + strand, within MPMX19_06264 at 14.761 kb on + strand, within MPMX19_06264 at 14.762 kb on - strand, within MPMX19_06264 at 14.762 kb on - strand, within MPMX19_06264 at 14.762 kb on - strand, within MPMX19_06264 at 14.816 kb on - strand, within MPMX19_06264 at 14.816 kb on - strand, within MPMX19_06264 at 14.906 kb on + strand, within MPMX19_06264 at 14.906 kb on + strand, within MPMX19_06264 at 14.907 kb on - strand, within MPMX19_06264 at 15.262 kb on + strand at 15.307 kb on + strand at 15.307 kb on + strand at 15.307 kb on + strand at 15.307 kb on + strand at 15.307 kb on + strand at 15.307 kb on + strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.308 kb on - strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.309 kb on + strand at 15.310 kb on - strand at 15.373 kb on + strand at 15.373 kb on + strand at 15.374 kb on - strand at 15.374 kb on - strand at 15.374 kb on - strand at 15.503 kb on + strand at 15.503 kb on + strand at 15.503 kb on + strand at 15.503 kb on + strand at 15.503 kb on + strand at 15.503 kb on + strand at 15.503 kb on + strand at 15.503 kb on + strand at 15.503 kb on + strand at 15.504 kb on - strand at 15.504 kb on - strand at 15.504 kb on - strand at 15.504 kb on - strand at 15.504 kb on - strand at 15.504 kb on - strand at 15.504 kb on - strand at 15.692 kb on + strand at 15.692 kb on + strand at 15.692 kb on + strand at 15.693 kb on - strand at 15.793 kb on + strand at 15.793 kb on + strand at 15.793 kb on + strand at 15.793 kb on + strand at 15.892 kb on + strand at 15.892 kb on + strand at 16.037 kb on + strand at 16.037 kb on + strand at 16.037 kb on + strand at 16.037 kb on + strand at 16.037 kb on + strand at 16.037 kb on + strand at 16.038 kb on - strand at 16.038 kb on - strand at 16.038 kb on - strand at 16.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 13,617 + MPMX19_06261 0.14 -0.8 13,617 + MPMX19_06261 0.14 +0.7 13,618 - MPMX19_06261 0.14 -1.3 13,755 + MPMX19_06261 0.46 -1.1 13,755 + MPMX19_06261 0.46 -0.4 13,755 + MPMX19_06261 0.46 -0.6 13,755 + MPMX19_06261 0.46 -1.0 13,755 + MPMX19_06261 0.46 -0.1 13,756 - MPMX19_06261 0.47 +0.7 13,756 - MPMX19_06261 0.47 -2.0 13,756 - MPMX19_06261 0.47 -0.9 13,923 + MPMX19_06261 0.86 -1.3 13,923 + MPMX19_06261 0.86 -0.3 13,923 + MPMX19_06261 0.86 -0.1 13,924 - MPMX19_06261 0.86 -2.1 13,924 - MPMX19_06261 0.86 -0.4 13,924 - MPMX19_06261 0.86 -0.6 13,924 - MPMX19_06261 0.86 +0.2 13,924 - MPMX19_06261 0.86 +1.1 13,924 - MPMX19_06261 0.86 -0.0 13,924 - MPMX19_06261 0.86 +0.7 14,007 - +0.4 14,215 + MPMX19_06263 0.25 -1.1 14,215 + MPMX19_06263 0.25 +0.8 14,215 + MPMX19_06263 0.25 -2.0 14,216 - MPMX19_06263 0.25 +1.5 14,216 - MPMX19_06263 0.25 -1.0 14,281 + MPMX19_06263 0.47 +0.1 14,281 + MPMX19_06263 0.47 +0.2 14,459 + -1.9 14,459 + +0.9 14,459 + +0.7 14,459 + -0.9 14,460 - -0.2 14,460 - -1.0 14,460 - -0.6 14,479 + -1.0 14,479 + -1.5 14,480 - +1.4 14,648 + MPMX19_06264 0.22 -0.2 14,648 + MPMX19_06264 0.22 +2.6 14,649 - MPMX19_06264 0.22 -0.3 14,761 + MPMX19_06264 0.37 -0.1 14,761 + MPMX19_06264 0.37 +1.0 14,762 - MPMX19_06264 0.37 -0.5 14,762 - MPMX19_06264 0.37 -2.0 14,762 - MPMX19_06264 0.37 -0.1 14,816 - MPMX19_06264 0.45 +0.1 14,816 - MPMX19_06264 0.45 +0.5 14,906 + MPMX19_06264 0.57 -0.9 14,906 + MPMX19_06264 0.57 -1.2 14,907 - MPMX19_06264 0.57 -1.9 15,262 + +0.1 15,307 + -0.3 15,307 + -1.2 15,307 + +1.0 15,307 + -2.5 15,307 + -0.6 15,307 + -0.1 15,308 - -1.2 15,308 - -0.4 15,308 - -0.1 15,308 - -0.5 15,308 - +1.4 15,308 - -2.7 15,308 - -0.6 15,309 + -0.4 15,309 + -0.1 15,309 + -1.0 15,309 + -0.9 15,309 + +0.1 15,309 + -0.1 15,309 + -2.6 15,310 - -1.5 15,373 + -0.3 15,373 + -1.3 15,374 - -1.3 15,374 - -1.2 15,374 - -0.2 15,503 + -0.4 15,503 + -1.5 15,503 + -0.1 15,503 + -1.8 15,503 + +0.4 15,503 + -1.2 15,503 + -0.8 15,503 + -0.5 15,503 + +0.2 15,504 - -1.1 15,504 - -0.9 15,504 - +0.1 15,504 - +1.2 15,504 - -0.1 15,504 - -2.2 15,504 - -0.9 15,692 + -0.7 15,692 + +0.4 15,692 + +1.1 15,693 - -0.4 15,793 + -0.6 15,793 + +0.4 15,793 + -0.3 15,793 + -0.9 15,892 + +1.2 15,892 + +0.3 16,037 + -1.2 16,037 + -1.7 16,037 + -0.1 16,037 + +1.5 16,037 + -1.5 16,037 + -0.8 16,038 - +0.4 16,038 - -0.6 16,038 - -1.1 16,038 - -0.2
Or see this region's nucleotide sequence