Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06260 and MPMX19_06261 are separated by 166 nucleotides MPMX19_06261 and MPMX19_06262 are separated by 20 nucleotides MPMX19_06262 and MPMX19_06263 overlap by 4 nucleotides MPMX19_06263 and MPMX19_06264 are separated by 48 nucleotides
MPMX19_06260: MPMX19_06260 - hypothetical protein, at 12,727 to 13,389
_06260
MPMX19_06261: MPMX19_06261 - hypothetical protein, at 13,556 to 13,984
_06261
MPMX19_06262: MPMX19_06262 - hypothetical protein, at 14,005 to 14,142
_06262
MPMX19_06263: MPMX19_06263 - hypothetical protein, at 14,139 to 14,441
_06263
MPMX19_06264: MPMX19_06264 - hypothetical protein, at 14,490 to 15,215
_06264
Position (kb) 13
14 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.570 kb on + strand at 12.570 kb on + strand at 12.570 kb on + strand at 12.570 kb on + strand at 12.571 kb on - strand at 12.571 kb on - strand at 12.571 kb on - strand at 12.666 kb on + strand at 12.666 kb on + strand at 12.666 kb on + strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.667 kb on - strand at 12.700 kb on + strand at 12.866 kb on + strand, within MPMX19_06260 at 12.866 kb on + strand, within MPMX19_06260 at 12.866 kb on + strand, within MPMX19_06260 at 12.866 kb on + strand, within MPMX19_06260 at 12.866 kb on + strand, within MPMX19_06260 at 12.867 kb on - strand, within MPMX19_06260 at 12.867 kb on - strand, within MPMX19_06260 at 12.867 kb on - strand, within MPMX19_06260 at 12.867 kb on - strand, within MPMX19_06260 at 13.089 kb on - strand, within MPMX19_06260 at 13.259 kb on + strand, within MPMX19_06260 at 13.259 kb on + strand, within MPMX19_06260 at 13.259 kb on + strand, within MPMX19_06260 at 13.260 kb on - strand, within MPMX19_06260 at 13.260 kb on - strand, within MPMX19_06260 at 13.365 kb on - strand at 13.365 kb on - strand at 13.365 kb on - strand at 13.365 kb on - strand at 13.405 kb on + strand at 13.405 kb on + strand at 13.405 kb on + strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.406 kb on - strand at 13.410 kb on + strand at 13.411 kb on - strand at 13.411 kb on - strand at 13.411 kb on - strand at 13.415 kb on + strand at 13.416 kb on - strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.450 kb on + strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.451 kb on - strand at 13.617 kb on + strand, within MPMX19_06261 at 13.617 kb on + strand, within MPMX19_06261 at 13.618 kb on - strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.755 kb on + strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.756 kb on - strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.923 kb on + strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 13.924 kb on - strand, within MPMX19_06261 at 14.007 kb on - strand at 14.215 kb on + strand, within MPMX19_06263 at 14.215 kb on + strand, within MPMX19_06263 at 14.215 kb on + strand, within MPMX19_06263 at 14.216 kb on - strand, within MPMX19_06263 at 14.216 kb on - strand, within MPMX19_06263 at 14.281 kb on + strand, within MPMX19_06263 at 14.281 kb on + strand, within MPMX19_06263 at 14.459 kb on + strand at 14.459 kb on + strand at 14.459 kb on + strand at 14.459 kb on + strand at 14.460 kb on - strand at 14.460 kb on - strand at 14.460 kb on - strand at 14.479 kb on + strand at 14.479 kb on + strand at 14.480 kb on - strand at 14.648 kb on + strand, within MPMX19_06264 at 14.648 kb on + strand, within MPMX19_06264 at 14.649 kb on - strand, within MPMX19_06264 at 14.761 kb on + strand, within MPMX19_06264 at 14.761 kb on + strand, within MPMX19_06264 at 14.762 kb on - strand, within MPMX19_06264 at 14.762 kb on - strand, within MPMX19_06264 at 14.762 kb on - strand, within MPMX19_06264 at 14.816 kb on - strand, within MPMX19_06264 at 14.816 kb on - strand, within MPMX19_06264 at 14.906 kb on + strand, within MPMX19_06264 at 14.906 kb on + strand, within MPMX19_06264 at 14.907 kb on - strand, within MPMX19_06264
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 12,570 + -0.9 12,570 + -0.3 12,570 + +0.4 12,570 + +0.2 12,571 - +0.5 12,571 - +0.9 12,571 - -0.3 12,666 + +0.2 12,666 + +0.5 12,666 + -2.1 12,667 - -0.6 12,667 - +0.4 12,667 - -0.1 12,667 - -0.6 12,667 - -1.0 12,667 - -0.9 12,667 - +0.2 12,700 + -1.2 12,866 + MPMX19_06260 0.21 +0.2 12,866 + MPMX19_06260 0.21 -1.1 12,866 + MPMX19_06260 0.21 +0.4 12,866 + MPMX19_06260 0.21 -0.3 12,866 + MPMX19_06260 0.21 -1.8 12,867 - MPMX19_06260 0.21 +0.4 12,867 - MPMX19_06260 0.21 -0.7 12,867 - MPMX19_06260 0.21 -0.3 12,867 - MPMX19_06260 0.21 -1.5 13,089 - MPMX19_06260 0.55 +0.4 13,259 + MPMX19_06260 0.80 -1.2 13,259 + MPMX19_06260 0.80 +0.0 13,259 + MPMX19_06260 0.80 -1.0 13,260 - MPMX19_06260 0.80 -1.0 13,260 - MPMX19_06260 0.80 +0.4 13,365 - -0.3 13,365 - -0.1 13,365 - -0.8 13,365 - -1.2 13,405 + -0.8 13,405 + +0.7 13,405 + -1.1 13,406 - -1.4 13,406 - +0.2 13,406 - -0.6 13,406 - -2.7 13,406 - -0.0 13,410 + -0.2 13,411 - -1.4 13,411 - +0.4 13,411 - -0.3 13,415 + -1.3 13,416 - -0.7 13,450 + +0.1 13,450 + -1.9 13,450 + -1.0 13,450 + -0.2 13,450 + -0.8 13,450 + -1.0 13,450 + -0.5 13,450 + -0.2 13,451 - +0.2 13,451 - -0.9 13,451 - -0.0 13,451 - -1.3 13,451 - +2.2 13,451 - -1.5 13,451 - -1.9 13,451 - -0.9 13,451 - -0.3 13,451 - +0.4 13,617 + MPMX19_06261 0.14 -0.8 13,617 + MPMX19_06261 0.14 +0.7 13,618 - MPMX19_06261 0.14 -1.3 13,755 + MPMX19_06261 0.46 -1.1 13,755 + MPMX19_06261 0.46 -0.4 13,755 + MPMX19_06261 0.46 -0.6 13,755 + MPMX19_06261 0.46 -1.0 13,755 + MPMX19_06261 0.46 -0.1 13,756 - MPMX19_06261 0.47 +0.7 13,756 - MPMX19_06261 0.47 -2.0 13,756 - MPMX19_06261 0.47 -0.9 13,923 + MPMX19_06261 0.86 -1.3 13,923 + MPMX19_06261 0.86 -0.3 13,923 + MPMX19_06261 0.86 -0.1 13,924 - MPMX19_06261 0.86 -2.1 13,924 - MPMX19_06261 0.86 -0.4 13,924 - MPMX19_06261 0.86 -0.6 13,924 - MPMX19_06261 0.86 +0.2 13,924 - MPMX19_06261 0.86 +1.1 13,924 - MPMX19_06261 0.86 -0.0 13,924 - MPMX19_06261 0.86 +0.7 14,007 - +0.4 14,215 + MPMX19_06263 0.25 -1.1 14,215 + MPMX19_06263 0.25 +0.8 14,215 + MPMX19_06263 0.25 -2.0 14,216 - MPMX19_06263 0.25 +1.5 14,216 - MPMX19_06263 0.25 -1.0 14,281 + MPMX19_06263 0.47 +0.1 14,281 + MPMX19_06263 0.47 +0.2 14,459 + -1.9 14,459 + +0.9 14,459 + +0.7 14,459 + -0.9 14,460 - -0.2 14,460 - -1.0 14,460 - -0.6 14,479 + -1.0 14,479 + -1.5 14,480 - +1.4 14,648 + MPMX19_06264 0.22 -0.2 14,648 + MPMX19_06264 0.22 +2.6 14,649 - MPMX19_06264 0.22 -0.3 14,761 + MPMX19_06264 0.37 -0.1 14,761 + MPMX19_06264 0.37 +1.0 14,762 - MPMX19_06264 0.37 -0.5 14,762 - MPMX19_06264 0.37 -2.0 14,762 - MPMX19_06264 0.37 -0.1 14,816 - MPMX19_06264 0.45 +0.1 14,816 - MPMX19_06264 0.45 +0.5 14,906 + MPMX19_06264 0.57 -0.9 14,906 + MPMX19_06264 0.57 -1.2 14,907 - MPMX19_06264 0.57 -1.9
Or see this region's nucleotide sequence