Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06244

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06243 and MPMX19_06244 are separated by 106 nucleotidesMPMX19_06244 and MPMX19_06245 are separated by 98 nucleotides MPMX19_06243: MPMX19_06243 - HTH-type transcriptional regulator PgrR, at 434,276 to 435,175 _06243 MPMX19_06244: MPMX19_06244 - 3-succinoylsemialdehyde-pyridine dehydrogenase, at 435,282 to 436,715 _06244 MPMX19_06245: MPMX19_06245 - Nucleoid occlusion protein, at 436,814 to 437,731 _06245 Position (kb) 435 436 437Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 434.352 kb on + strandat 434.353 kb on - strandat 434.353 kb on - strandat 434.353 kb on - strandat 434.353 kb on - strandat 434.353 kb on - strandat 434.353 kb on - strandat 434.353 kb on - strandat 434.355 kb on + strandat 434.355 kb on + strandat 434.355 kb on + strandat 434.355 kb on + strandat 434.356 kb on - strandat 434.356 kb on - strandat 434.451 kb on + strand, within MPMX19_06243at 434.451 kb on + strand, within MPMX19_06243at 434.451 kb on + strand, within MPMX19_06243at 434.451 kb on + strand, within MPMX19_06243at 434.452 kb on - strand, within MPMX19_06243at 434.452 kb on - strand, within MPMX19_06243at 434.569 kb on - strand, within MPMX19_06243at 434.655 kb on + strand, within MPMX19_06243at 434.655 kb on + strand, within MPMX19_06243at 434.655 kb on + strand, within MPMX19_06243at 434.655 kb on + strand, within MPMX19_06243at 434.655 kb on + strand, within MPMX19_06243at 434.655 kb on + strand, within MPMX19_06243at 434.656 kb on - strand, within MPMX19_06243at 434.656 kb on - strand, within MPMX19_06243at 434.656 kb on - strand, within MPMX19_06243at 434.829 kb on + strand, within MPMX19_06243at 434.830 kb on - strand, within MPMX19_06243at 434.830 kb on - strand, within MPMX19_06243at 434.830 kb on - strand, within MPMX19_06243at 434.830 kb on - strand, within MPMX19_06243at 434.830 kb on - strand, within MPMX19_06243at 434.830 kb on - strand, within MPMX19_06243at 434.830 kb on - strand, within MPMX19_06243at 435.217 kb on + strandat 435.217 kb on + strandat 435.217 kb on + strandat 435.217 kb on + strandat 435.218 kb on - strandat 435.218 kb on - strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.303 kb on + strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.304 kb on - strandat 435.305 kb on + strandat 435.555 kb on + strand, within MPMX19_06244at 435.555 kb on + strand, within MPMX19_06244at 435.555 kb on + strand, within MPMX19_06244at 435.555 kb on + strand, within MPMX19_06244at 435.556 kb on - strand, within MPMX19_06244at 435.556 kb on - strand, within MPMX19_06244at 435.556 kb on - strand, within MPMX19_06244at 435.556 kb on - strand, within MPMX19_06244at 435.639 kb on + strand, within MPMX19_06244at 435.639 kb on + strand, within MPMX19_06244at 435.639 kb on + strand, within MPMX19_06244at 435.640 kb on - strand, within MPMX19_06244at 435.640 kb on - strand, within MPMX19_06244at 435.640 kb on - strand, within MPMX19_06244at 436.275 kb on + strand, within MPMX19_06244at 436.275 kb on + strand, within MPMX19_06244at 436.275 kb on + strand, within MPMX19_06244at 436.275 kb on + strand, within MPMX19_06244at 436.275 kb on + strand, within MPMX19_06244at 436.276 kb on - strand, within MPMX19_06244at 436.276 kb on - strand, within MPMX19_06244at 436.455 kb on + strand, within MPMX19_06244at 436.500 kb on + strand, within MPMX19_06244at 436.500 kb on + strand, within MPMX19_06244at 436.500 kb on + strand, within MPMX19_06244at 436.501 kb on - strand, within MPMX19_06244at 436.515 kb on + strand, within MPMX19_06244at 436.515 kb on + strand, within MPMX19_06244at 436.515 kb on + strand, within MPMX19_06244at 436.515 kb on + strand, within MPMX19_06244at 436.515 kb on + strand, within MPMX19_06244at 436.515 kb on + strand, within MPMX19_06244at 436.515 kb on + strand, within MPMX19_06244at 436.515 kb on + strand, within MPMX19_06244at 436.516 kb on - strand, within MPMX19_06244at 436.516 kb on - strand, within MPMX19_06244at 436.516 kb on - strand, within MPMX19_06244at 436.516 kb on - strand, within MPMX19_06244at 436.516 kb on - strand, within MPMX19_06244at 436.516 kb on - strand, within MPMX19_06244at 436.516 kb on - strand, within MPMX19_06244at 436.516 kb on - strand, within MPMX19_06244at 436.516 kb on - strand, within MPMX19_06244at 436.516 kb on - strand, within MPMX19_06244at 436.653 kb on + strandat 436.654 kb on - strandat 436.713 kb on + strandat 436.713 kb on + strandat 436.815 kb on + strandat 436.815 kb on + strandat 436.815 kb on + strandat 436.815 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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434,352 + +0.2
434,353 - -1.1
434,353 - -0.6
434,353 - -1.3
434,353 - +0.9
434,353 - -1.1
434,353 - +0.2
434,353 - -1.4
434,355 + -0.4
434,355 + -0.2
434,355 + -1.6
434,355 + +0.5
434,356 - +1.6
434,356 - -0.5
434,451 + MPMX19_06243 0.19 +0.8
434,451 + MPMX19_06243 0.19 -0.4
434,451 + MPMX19_06243 0.19 -0.6
434,451 + MPMX19_06243 0.19 -0.3
434,452 - MPMX19_06243 0.20 +0.6
434,452 - MPMX19_06243 0.20 -1.0
434,569 - MPMX19_06243 0.33 +1.0
434,655 + MPMX19_06243 0.42 +0.6
434,655 + MPMX19_06243 0.42 +1.0
434,655 + MPMX19_06243 0.42 -0.1
434,655 + MPMX19_06243 0.42 +0.2
434,655 + MPMX19_06243 0.42 +2.2
434,655 + MPMX19_06243 0.42 -2.1
434,656 - MPMX19_06243 0.42 +0.0
434,656 - MPMX19_06243 0.42 +0.4
434,656 - MPMX19_06243 0.42 +0.2
434,829 + MPMX19_06243 0.61 -1.2
434,830 - MPMX19_06243 0.62 -0.0
434,830 - MPMX19_06243 0.62 -0.2
434,830 - MPMX19_06243 0.62 -1.0
434,830 - MPMX19_06243 0.62 -0.9
434,830 - MPMX19_06243 0.62 -2.3
434,830 - MPMX19_06243 0.62 +0.6
434,830 - MPMX19_06243 0.62 -1.0
435,217 + +0.2
435,217 + -1.5
435,217 + -0.8
435,217 + -0.3
435,218 - -1.1
435,218 - -0.6
435,303 + +0.4
435,303 + -0.8
435,303 + -0.1
435,303 + -2.8
435,303 + +0.6
435,303 + -0.4
435,303 + -1.5
435,303 + -1.7
435,303 + +0.6
435,303 + +0.0
435,303 + +0.5
435,303 + +0.1
435,303 + -1.3
435,303 + -1.3
435,303 + -0.6
435,303 + -0.9
435,303 + -0.9
435,303 + -0.1
435,304 - +0.8
435,304 - -0.6
435,304 - -0.7
435,304 - -0.5
435,304 - -1.3
435,304 - -0.8
435,304 - +0.1
435,304 - +0.7
435,304 - -0.7
435,304 - +1.6
435,304 - -0.0
435,304 - -0.8
435,304 - +0.1
435,304 - +0.0
435,304 - +2.2
435,304 - -2.1
435,304 - -0.7
435,304 - -1.3
435,304 - -0.8
435,305 + +0.2
435,555 + MPMX19_06244 0.19 -0.9
435,555 + MPMX19_06244 0.19 +0.9
435,555 + MPMX19_06244 0.19 -0.0
435,555 + MPMX19_06244 0.19 -1.3
435,556 - MPMX19_06244 0.19 -0.8
435,556 - MPMX19_06244 0.19 -1.2
435,556 - MPMX19_06244 0.19 -0.6
435,556 - MPMX19_06244 0.19 +0.0
435,639 + MPMX19_06244 0.25 -1.6
435,639 + MPMX19_06244 0.25 -0.1
435,639 + MPMX19_06244 0.25 +0.0
435,640 - MPMX19_06244 0.25 -0.1
435,640 - MPMX19_06244 0.25 +0.3
435,640 - MPMX19_06244 0.25 +0.2
436,275 + MPMX19_06244 0.69 -0.8
436,275 + MPMX19_06244 0.69 -1.5
436,275 + MPMX19_06244 0.69 -1.7
436,275 + MPMX19_06244 0.69 +0.6
436,275 + MPMX19_06244 0.69 -1.0
436,276 - MPMX19_06244 0.69 +0.2
436,276 - MPMX19_06244 0.69 -1.3
436,455 + MPMX19_06244 0.82 -0.4
436,500 + MPMX19_06244 0.85 +0.6
436,500 + MPMX19_06244 0.85 -0.8
436,500 + MPMX19_06244 0.85 -0.2
436,501 - MPMX19_06244 0.85 +0.2
436,515 + MPMX19_06244 0.86 -0.1
436,515 + MPMX19_06244 0.86 -1.0
436,515 + MPMX19_06244 0.86 +0.5
436,515 + MPMX19_06244 0.86 -0.1
436,515 + MPMX19_06244 0.86 -1.8
436,515 + MPMX19_06244 0.86 -1.5
436,515 + MPMX19_06244 0.86 -2.2
436,515 + MPMX19_06244 0.86 -0.1
436,516 - MPMX19_06244 0.86 +1.6
436,516 - MPMX19_06244 0.86 -0.7
436,516 - MPMX19_06244 0.86 -1.1
436,516 - MPMX19_06244 0.86 +0.0
436,516 - MPMX19_06244 0.86 +0.5
436,516 - MPMX19_06244 0.86 -1.3
436,516 - MPMX19_06244 0.86 -1.9
436,516 - MPMX19_06244 0.86 -0.6
436,516 - MPMX19_06244 0.86 -0.7
436,516 - MPMX19_06244 0.86 -1.0
436,653 + +0.0
436,654 - +1.2
436,713 + -0.6
436,713 + +0.3
436,815 + -2.3
436,815 + +0.6
436,815 + -1.1
436,815 + -1.3

Or see this region's nucleotide sequence