Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06242 and MPMX19_06243 are separated by 461 nucleotides MPMX19_06243 and MPMX19_06244 are separated by 106 nucleotides
MPMX19_06242: MPMX19_06242 - Fe(3+)-pyochelin receptor, at 431,589 to 433,814
_06242
MPMX19_06243: MPMX19_06243 - HTH-type transcriptional regulator PgrR, at 434,276 to 435,175
_06243
MPMX19_06244: MPMX19_06244 - 3-succinoylsemialdehyde-pyridine dehydrogenase, at 435,282 to 436,715
_06244
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.327 kb on + strand, within MPMX19_06242 at 433.328 kb on - strand, within MPMX19_06242 at 433.328 kb on - strand, within MPMX19_06242 at 433.328 kb on - strand, within MPMX19_06242 at 433.328 kb on - strand, within MPMX19_06242 at 433.328 kb on - strand, within MPMX19_06242 at 433.420 kb on + strand, within MPMX19_06242 at 433.420 kb on + strand, within MPMX19_06242 at 433.421 kb on - strand, within MPMX19_06242 at 433.874 kb on + strand at 433.875 kb on - strand at 434.146 kb on + strand at 434.147 kb on - strand at 434.162 kb on - strand at 434.162 kb on - strand at 434.240 kb on + strand at 434.241 kb on - strand at 434.352 kb on + strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.355 kb on + strand at 434.355 kb on + strand at 434.355 kb on + strand at 434.355 kb on + strand at 434.356 kb on - strand at 434.356 kb on - strand at 434.451 kb on + strand, within MPMX19_06243 at 434.451 kb on + strand, within MPMX19_06243 at 434.451 kb on + strand, within MPMX19_06243 at 434.451 kb on + strand, within MPMX19_06243 at 434.452 kb on - strand, within MPMX19_06243 at 434.452 kb on - strand, within MPMX19_06243 at 434.569 kb on - strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.656 kb on - strand, within MPMX19_06243 at 434.656 kb on - strand, within MPMX19_06243 at 434.656 kb on - strand, within MPMX19_06243 at 434.829 kb on + strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 435.217 kb on + strand at 435.217 kb on + strand at 435.217 kb on + strand at 435.217 kb on + strand at 435.218 kb on - strand at 435.218 kb on - strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.305 kb on + strand at 435.555 kb on + strand, within MPMX19_06244 at 435.555 kb on + strand, within MPMX19_06244 at 435.555 kb on + strand, within MPMX19_06244 at 435.555 kb on + strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.639 kb on + strand, within MPMX19_06244 at 435.639 kb on + strand, within MPMX19_06244 at 435.639 kb on + strand, within MPMX19_06244 at 435.640 kb on - strand, within MPMX19_06244 at 435.640 kb on - strand, within MPMX19_06244 at 435.640 kb on - strand, within MPMX19_06244
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 433,327 + MPMX19_06242 0.78 -1.6 433,327 + MPMX19_06242 0.78 -0.5 433,327 + MPMX19_06242 0.78 +0.0 433,327 + MPMX19_06242 0.78 +0.2 433,327 + MPMX19_06242 0.78 -0.1 433,327 + MPMX19_06242 0.78 +1.2 433,327 + MPMX19_06242 0.78 -1.4 433,327 + MPMX19_06242 0.78 -1.7 433,327 + MPMX19_06242 0.78 -0.5 433,327 + MPMX19_06242 0.78 -0.6 433,328 - MPMX19_06242 0.78 +0.2 433,328 - MPMX19_06242 0.78 -0.4 433,328 - MPMX19_06242 0.78 -0.6 433,328 - MPMX19_06242 0.78 -0.6 433,328 - MPMX19_06242 0.78 -1.2 433,420 + MPMX19_06242 0.82 +0.6 433,420 + MPMX19_06242 0.82 -1.1 433,421 - MPMX19_06242 0.82 -0.8 433,874 + +0.4 433,875 - +0.1 434,146 + -0.3 434,147 - -0.6 434,162 - -0.2 434,162 - -0.4 434,240 + -0.1 434,241 - +0.8 434,352 + +0.2 434,353 - -1.1 434,353 - -0.6 434,353 - -1.3 434,353 - +0.9 434,353 - -1.1 434,353 - +0.2 434,353 - -1.4 434,355 + -0.4 434,355 + -0.2 434,355 + -1.6 434,355 + +0.5 434,356 - +1.6 434,356 - -0.5 434,451 + MPMX19_06243 0.19 +0.8 434,451 + MPMX19_06243 0.19 -0.4 434,451 + MPMX19_06243 0.19 -0.6 434,451 + MPMX19_06243 0.19 -0.3 434,452 - MPMX19_06243 0.20 +0.6 434,452 - MPMX19_06243 0.20 -1.0 434,569 - MPMX19_06243 0.33 +1.0 434,655 + MPMX19_06243 0.42 +0.6 434,655 + MPMX19_06243 0.42 +1.0 434,655 + MPMX19_06243 0.42 -0.1 434,655 + MPMX19_06243 0.42 +0.2 434,655 + MPMX19_06243 0.42 +2.2 434,655 + MPMX19_06243 0.42 -2.1 434,656 - MPMX19_06243 0.42 +0.0 434,656 - MPMX19_06243 0.42 +0.4 434,656 - MPMX19_06243 0.42 +0.2 434,829 + MPMX19_06243 0.61 -1.2 434,830 - MPMX19_06243 0.62 -0.0 434,830 - MPMX19_06243 0.62 -0.2 434,830 - MPMX19_06243 0.62 -1.0 434,830 - MPMX19_06243 0.62 -0.9 434,830 - MPMX19_06243 0.62 -2.3 434,830 - MPMX19_06243 0.62 +0.6 434,830 - MPMX19_06243 0.62 -1.0 435,217 + +0.2 435,217 + -1.5 435,217 + -0.8 435,217 + -0.3 435,218 - -1.1 435,218 - -0.6 435,303 + +0.4 435,303 + -0.8 435,303 + -0.1 435,303 + -2.8 435,303 + +0.6 435,303 + -0.4 435,303 + -1.5 435,303 + -1.7 435,303 + +0.6 435,303 + +0.0 435,303 + +0.5 435,303 + +0.1 435,303 + -1.3 435,303 + -1.3 435,303 + -0.6 435,303 + -0.9 435,303 + -0.9 435,303 + -0.1 435,304 - +0.8 435,304 - -0.6 435,304 - -0.7 435,304 - -0.5 435,304 - -1.3 435,304 - -0.8 435,304 - +0.1 435,304 - +0.7 435,304 - -0.7 435,304 - +1.6 435,304 - -0.0 435,304 - -0.8 435,304 - +0.1 435,304 - +0.0 435,304 - +2.2 435,304 - -2.1 435,304 - -0.7 435,304 - -1.3 435,304 - -0.8 435,305 + +0.2 435,555 + MPMX19_06244 0.19 -0.9 435,555 + MPMX19_06244 0.19 +0.9 435,555 + MPMX19_06244 0.19 -0.0 435,555 + MPMX19_06244 0.19 -1.3 435,556 - MPMX19_06244 0.19 -0.8 435,556 - MPMX19_06244 0.19 -1.2 435,556 - MPMX19_06244 0.19 -0.6 435,556 - MPMX19_06244 0.19 +0.0 435,639 + MPMX19_06244 0.25 -1.6 435,639 + MPMX19_06244 0.25 -0.1 435,639 + MPMX19_06244 0.25 +0.0 435,640 - MPMX19_06244 0.25 -0.1 435,640 - MPMX19_06244 0.25 +0.3 435,640 - MPMX19_06244 0.25 +0.2
Or see this region's nucleotide sequence