Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06240 and MPMX19_06241 are separated by 113 nucleotides MPMX19_06241 and MPMX19_06242 are separated by 166 nucleotides
MPMX19_06240: MPMX19_06240 - Sensor histidine kinase BtsS, at 428,811 to 430,508
_06240
MPMX19_06241: MPMX19_06241 - hypothetical protein, at 430,622 to 431,422
_06241
MPMX19_06242: MPMX19_06242 - Fe(3+)-pyochelin receptor, at 431,589 to 433,814
_06242
Position (kb) 430
431
432 Strain fitness (log2 ratio) -2
-1
0
1
2 at 429.637 kb on + strand, within MPMX19_06240 at 429.637 kb on + strand, within MPMX19_06240 at 429.637 kb on + strand, within MPMX19_06240 at 429.637 kb on + strand, within MPMX19_06240 at 429.637 kb on + strand, within MPMX19_06240 at 429.637 kb on + strand, within MPMX19_06240 at 429.637 kb on + strand, within MPMX19_06240 at 429.637 kb on + strand, within MPMX19_06240 at 429.637 kb on + strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 429.638 kb on - strand, within MPMX19_06240 at 430.204 kb on + strand, within MPMX19_06240 at 430.327 kb on + strand, within MPMX19_06240 at 430.327 kb on + strand, within MPMX19_06240 at 430.327 kb on + strand, within MPMX19_06240 at 430.327 kb on + strand, within MPMX19_06240 at 430.327 kb on + strand, within MPMX19_06240 at 430.327 kb on + strand, within MPMX19_06240 at 430.327 kb on + strand, within MPMX19_06240 at 430.327 kb on + strand, within MPMX19_06240 at 430.327 kb on + strand, within MPMX19_06240 at 430.328 kb on - strand, within MPMX19_06240 at 430.328 kb on - strand, within MPMX19_06240 at 430.328 kb on - strand, within MPMX19_06240 at 430.328 kb on - strand, within MPMX19_06240 at 430.328 kb on - strand, within MPMX19_06240 at 430.328 kb on - strand, within MPMX19_06240 at 430.328 kb on - strand, within MPMX19_06240 at 430.328 kb on - strand, within MPMX19_06240 at 430.328 kb on - strand, within MPMX19_06240 at 430.363 kb on + strand at 430.364 kb on - strand at 430.364 kb on - strand at 430.364 kb on - strand at 430.364 kb on - strand at 430.438 kb on + strand at 430.439 kb on - strand at 430.453 kb on + strand at 430.453 kb on + strand at 430.453 kb on + strand at 430.532 kb on + strand at 430.533 kb on - strand at 430.561 kb on + strand at 430.561 kb on + strand at 430.561 kb on + strand at 430.562 kb on - strand at 430.562 kb on - strand at 430.562 kb on - strand at 430.562 kb on - strand at 430.562 kb on - strand at 430.562 kb on - strand at 430.562 kb on - strand at 430.605 kb on + strand at 430.605 kb on + strand at 430.606 kb on - strand at 430.619 kb on + strand at 430.942 kb on - strand, within MPMX19_06241 at 431.136 kb on + strand, within MPMX19_06241 at 431.136 kb on + strand, within MPMX19_06241 at 431.136 kb on + strand, within MPMX19_06241 at 431.136 kb on + strand, within MPMX19_06241 at 431.136 kb on + strand, within MPMX19_06241 at 431.137 kb on - strand, within MPMX19_06241 at 431.137 kb on - strand, within MPMX19_06241 at 431.137 kb on - strand, within MPMX19_06241 at 431.137 kb on - strand, within MPMX19_06241 at 431.331 kb on + strand, within MPMX19_06241 at 431.331 kb on + strand, within MPMX19_06241 at 431.331 kb on + strand, within MPMX19_06241 at 431.332 kb on - strand, within MPMX19_06241 at 431.332 kb on - strand, within MPMX19_06241 at 431.332 kb on - strand, within MPMX19_06241 at 431.332 kb on - strand, within MPMX19_06241 at 431.552 kb on + strand at 431.553 kb on - strand at 431.590 kb on + strand at 431.591 kb on - strand at 431.635 kb on + strand at 431.635 kb on + strand at 431.635 kb on + strand at 431.635 kb on + strand at 431.635 kb on + strand at 431.635 kb on + strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.636 kb on - strand at 431.671 kb on + strand at 431.671 kb on + strand at 431.671 kb on + strand at 431.672 kb on - strand at 431.672 kb on - strand at 431.672 kb on - strand at 431.672 kb on - strand at 431.674 kb on + strand at 431.674 kb on + strand at 431.674 kb on + strand at 431.674 kb on + strand at 431.674 kb on + strand at 431.674 kb on + strand at 431.674 kb on + strand at 431.674 kb on + strand at 431.674 kb on + strand at 431.674 kb on + strand at 431.674 kb on + strand at 431.675 kb on - strand at 431.675 kb on - strand at 431.675 kb on - strand at 431.675 kb on - strand at 431.675 kb on - strand at 431.675 kb on - strand at 431.734 kb on + strand at 431.734 kb on + strand at 431.734 kb on + strand at 431.735 kb on - strand at 431.735 kb on - strand at 431.735 kb on - strand at 431.735 kb on - strand at 431.735 kb on - strand at 431.761 kb on + strand at 431.809 kb on + strand at 431.809 kb on + strand at 431.809 kb on + strand at 431.809 kb on + strand at 431.809 kb on + strand at 431.810 kb on - strand at 431.810 kb on - strand at 431.810 kb on - strand at 431.810 kb on - strand at 431.878 kb on + strand, within MPMX19_06242 at 431.878 kb on + strand, within MPMX19_06242 at 431.878 kb on + strand, within MPMX19_06242 at 431.879 kb on - strand, within MPMX19_06242 at 431.879 kb on - strand, within MPMX19_06242 at 431.879 kb on - strand, within MPMX19_06242 at 431.879 kb on - strand, within MPMX19_06242 at 431.977 kb on + strand, within MPMX19_06242 at 431.986 kb on + strand, within MPMX19_06242 at 431.986 kb on + strand, within MPMX19_06242 at 431.986 kb on + strand, within MPMX19_06242 at 431.986 kb on + strand, within MPMX19_06242 at 431.987 kb on - strand, within MPMX19_06242 at 431.987 kb on - strand, within MPMX19_06242 at 431.987 kb on - strand, within MPMX19_06242 at 431.987 kb on - strand, within MPMX19_06242 at 431.987 kb on - strand, within MPMX19_06242 at 431.987 kb on - strand, within MPMX19_06242 at 432.064 kb on + strand, within MPMX19_06242 at 432.064 kb on + strand, within MPMX19_06242 at 432.064 kb on + strand, within MPMX19_06242 at 432.064 kb on + strand, within MPMX19_06242 at 432.064 kb on + strand, within MPMX19_06242 at 432.064 kb on + strand, within MPMX19_06242 at 432.064 kb on + strand, within MPMX19_06242 at 432.065 kb on - strand, within MPMX19_06242 at 432.065 kb on - strand, within MPMX19_06242 at 432.065 kb on - strand, within MPMX19_06242 at 432.065 kb on - strand, within MPMX19_06242 at 432.065 kb on - strand, within MPMX19_06242 at 432.160 kb on + strand, within MPMX19_06242 at 432.161 kb on - strand, within MPMX19_06242 at 432.161 kb on - strand, within MPMX19_06242 at 432.161 kb on - strand, within MPMX19_06242 at 432.161 kb on - strand, within MPMX19_06242 at 432.161 kb on - strand, within MPMX19_06242 at 432.184 kb on + strand, within MPMX19_06242 at 432.184 kb on + strand, within MPMX19_06242 at 432.184 kb on + strand, within MPMX19_06242 at 432.184 kb on + strand, within MPMX19_06242 at 432.184 kb on + strand, within MPMX19_06242 at 432.184 kb on + strand, within MPMX19_06242 at 432.185 kb on - strand, within MPMX19_06242 at 432.185 kb on - strand, within MPMX19_06242 at 432.247 kb on + strand, within MPMX19_06242 at 432.247 kb on + strand, within MPMX19_06242 at 432.247 kb on + strand, within MPMX19_06242 at 432.247 kb on + strand, within MPMX19_06242 at 432.247 kb on + strand, within MPMX19_06242 at 432.247 kb on + strand, within MPMX19_06242 at 432.248 kb on - strand, within MPMX19_06242 at 432.248 kb on - strand, within MPMX19_06242 at 432.248 kb on - strand, within MPMX19_06242 at 432.248 kb on - strand, within MPMX19_06242 at 432.248 kb on - strand, within MPMX19_06242 at 432.248 kb on - strand, within MPMX19_06242 at 432.248 kb on - strand, within MPMX19_06242 at 432.268 kb on + strand, within MPMX19_06242 at 432.268 kb on + strand, within MPMX19_06242 at 432.268 kb on + strand, within MPMX19_06242 at 432.268 kb on + strand, within MPMX19_06242 at 432.269 kb on - strand, within MPMX19_06242 at 432.269 kb on - strand, within MPMX19_06242 at 432.269 kb on - strand, within MPMX19_06242 at 432.269 kb on - strand, within MPMX19_06242 at 432.277 kb on + strand, within MPMX19_06242 at 432.277 kb on + strand, within MPMX19_06242 at 432.277 kb on + strand, within MPMX19_06242 at 432.277 kb on + strand, within MPMX19_06242 at 432.278 kb on - strand, within MPMX19_06242 at 432.295 kb on + strand, within MPMX19_06242 at 432.295 kb on + strand, within MPMX19_06242 at 432.295 kb on + strand, within MPMX19_06242 at 432.295 kb on + strand, within MPMX19_06242 at 432.295 kb on + strand, within MPMX19_06242 at 432.296 kb on - strand, within MPMX19_06242 at 432.296 kb on - strand, within MPMX19_06242 at 432.296 kb on - strand, within MPMX19_06242 at 432.310 kb on + strand, within MPMX19_06242 at 432.311 kb on - strand, within MPMX19_06242 at 432.311 kb on - strand, within MPMX19_06242
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 429,637 + MPMX19_06240 0.49 +1.6 429,637 + MPMX19_06240 0.49 -1.0 429,637 + MPMX19_06240 0.49 -1.1 429,637 + MPMX19_06240 0.49 -0.5 429,637 + MPMX19_06240 0.49 -1.6 429,637 + MPMX19_06240 0.49 -2.0 429,637 + MPMX19_06240 0.49 -0.5 429,637 + MPMX19_06240 0.49 -1.0 429,637 + MPMX19_06240 0.49 +1.5 429,638 - MPMX19_06240 0.49 +0.2 429,638 - MPMX19_06240 0.49 -2.4 429,638 - MPMX19_06240 0.49 -0.5 429,638 - MPMX19_06240 0.49 -0.6 429,638 - MPMX19_06240 0.49 -1.8 429,638 - MPMX19_06240 0.49 -1.3 429,638 - MPMX19_06240 0.49 -0.8 429,638 - MPMX19_06240 0.49 +1.2 429,638 - MPMX19_06240 0.49 +0.2 429,638 - MPMX19_06240 0.49 -0.8 429,638 - MPMX19_06240 0.49 -0.3 429,638 - MPMX19_06240 0.49 -0.4 429,638 - MPMX19_06240 0.49 -0.4 429,638 - MPMX19_06240 0.49 -1.1 430,204 + MPMX19_06240 0.82 +0.2 430,327 + MPMX19_06240 0.89 +0.1 430,327 + MPMX19_06240 0.89 -1.0 430,327 + MPMX19_06240 0.89 +0.7 430,327 + MPMX19_06240 0.89 -2.1 430,327 + MPMX19_06240 0.89 +1.3 430,327 + MPMX19_06240 0.89 -0.1 430,327 + MPMX19_06240 0.89 -0.6 430,327 + MPMX19_06240 0.89 -1.7 430,327 + MPMX19_06240 0.89 -1.1 430,328 - MPMX19_06240 0.89 +0.0 430,328 - MPMX19_06240 0.89 -0.6 430,328 - MPMX19_06240 0.89 -1.0 430,328 - MPMX19_06240 0.89 -1.6 430,328 - MPMX19_06240 0.89 -0.8 430,328 - MPMX19_06240 0.89 -1.1 430,328 - MPMX19_06240 0.89 -0.6 430,328 - MPMX19_06240 0.89 -0.6 430,328 - MPMX19_06240 0.89 -0.0 430,363 + +0.6 430,364 - +0.2 430,364 - -1.8 430,364 - +0.2 430,364 - -1.3 430,438 + -0.4 430,439 - +0.1 430,453 + -0.8 430,453 + +0.4 430,453 + -0.2 430,532 + +0.1 430,533 - -1.3 430,561 + +0.2 430,561 + +0.2 430,561 + +0.2 430,562 - -0.6 430,562 - +0.9 430,562 - -0.5 430,562 - +0.5 430,562 - -1.0 430,562 - +0.5 430,562 - +0.3 430,605 + -0.3 430,605 + -0.6 430,606 - -1.3 430,619 + -0.1 430,942 - MPMX19_06241 0.40 -0.4 431,136 + MPMX19_06241 0.64 +0.5 431,136 + MPMX19_06241 0.64 -2.4 431,136 + MPMX19_06241 0.64 -0.7 431,136 + MPMX19_06241 0.64 -1.3 431,136 + MPMX19_06241 0.64 -0.8 431,137 - MPMX19_06241 0.64 +0.1 431,137 - MPMX19_06241 0.64 +2.2 431,137 - MPMX19_06241 0.64 -1.2 431,137 - MPMX19_06241 0.64 -1.4 431,331 + MPMX19_06241 0.89 -1.4 431,331 + MPMX19_06241 0.89 -0.1 431,331 + MPMX19_06241 0.89 -0.3 431,332 - MPMX19_06241 0.89 -2.1 431,332 - MPMX19_06241 0.89 +0.0 431,332 - MPMX19_06241 0.89 -0.1 431,332 - MPMX19_06241 0.89 +1.2 431,552 + -0.4 431,553 - -1.3 431,590 + +1.2 431,591 - -0.6 431,635 + -0.3 431,635 + +0.4 431,635 + -0.2 431,635 + +0.2 431,635 + -1.4 431,635 + -0.0 431,636 - +0.3 431,636 - -0.5 431,636 - -1.5 431,636 - -0.8 431,636 - -0.7 431,636 - -0.0 431,636 - -1.0 431,636 - -0.4 431,636 - -0.5 431,636 - -1.1 431,636 - +0.4 431,636 - -0.4 431,636 - -1.5 431,636 - +0.3 431,636 - -1.1 431,671 + -1.4 431,671 + -0.4 431,671 + -0.7 431,672 - +0.3 431,672 - -1.6 431,672 - -0.5 431,672 - -0.4 431,674 + -0.1 431,674 + -0.8 431,674 + -1.1 431,674 + +0.2 431,674 + -1.2 431,674 + -0.4 431,674 + +0.1 431,674 + -1.3 431,674 + -0.6 431,674 + -0.1 431,674 + -0.1 431,675 - -0.4 431,675 - -0.5 431,675 - -2.7 431,675 - +0.2 431,675 - +0.5 431,675 - +0.2 431,734 + -0.3 431,734 + -1.0 431,734 + -0.6 431,735 - -0.5 431,735 - -1.4 431,735 - +0.9 431,735 - +0.9 431,735 - -1.0 431,761 + +2.0 431,809 + -0.7 431,809 + -1.1 431,809 + +0.3 431,809 + +0.0 431,809 + -0.9 431,810 - +0.3 431,810 - -0.1 431,810 - -0.6 431,810 - -1.3 431,878 + MPMX19_06242 0.13 +1.0 431,878 + MPMX19_06242 0.13 -1.6 431,878 + MPMX19_06242 0.13 -0.9 431,879 - MPMX19_06242 0.13 -0.9 431,879 - MPMX19_06242 0.13 -1.1 431,879 - MPMX19_06242 0.13 +0.6 431,879 - MPMX19_06242 0.13 -0.4 431,977 + MPMX19_06242 0.17 +0.9 431,986 + MPMX19_06242 0.18 -1.0 431,986 + MPMX19_06242 0.18 -1.7 431,986 + MPMX19_06242 0.18 +1.4 431,986 + MPMX19_06242 0.18 -0.9 431,987 - MPMX19_06242 0.18 -0.7 431,987 - MPMX19_06242 0.18 -0.4 431,987 - MPMX19_06242 0.18 -1.3 431,987 - MPMX19_06242 0.18 -0.7 431,987 - MPMX19_06242 0.18 +0.4 431,987 - MPMX19_06242 0.18 -0.1 432,064 + MPMX19_06242 0.21 +0.4 432,064 + MPMX19_06242 0.21 -0.2 432,064 + MPMX19_06242 0.21 -2.3 432,064 + MPMX19_06242 0.21 +1.2 432,064 + MPMX19_06242 0.21 -0.4 432,064 + MPMX19_06242 0.21 -0.3 432,064 + MPMX19_06242 0.21 +0.6 432,065 - MPMX19_06242 0.21 -0.6 432,065 - MPMX19_06242 0.21 +1.6 432,065 - MPMX19_06242 0.21 +1.6 432,065 - MPMX19_06242 0.21 -0.1 432,065 - MPMX19_06242 0.21 -1.3 432,160 + MPMX19_06242 0.26 +0.1 432,161 - MPMX19_06242 0.26 +0.1 432,161 - MPMX19_06242 0.26 -0.6 432,161 - MPMX19_06242 0.26 -0.6 432,161 - MPMX19_06242 0.26 +0.3 432,161 - MPMX19_06242 0.26 -0.7 432,184 + MPMX19_06242 0.27 -0.6 432,184 + MPMX19_06242 0.27 -0.1 432,184 + MPMX19_06242 0.27 +0.0 432,184 + MPMX19_06242 0.27 -0.7 432,184 + MPMX19_06242 0.27 -0.1 432,184 + MPMX19_06242 0.27 -0.7 432,185 - MPMX19_06242 0.27 +0.6 432,185 - MPMX19_06242 0.27 +0.2 432,247 + MPMX19_06242 0.30 -0.4 432,247 + MPMX19_06242 0.30 -1.0 432,247 + MPMX19_06242 0.30 -0.7 432,247 + MPMX19_06242 0.30 -0.8 432,247 + MPMX19_06242 0.30 +0.1 432,247 + MPMX19_06242 0.30 +0.4 432,248 - MPMX19_06242 0.30 -1.1 432,248 - MPMX19_06242 0.30 -1.4 432,248 - MPMX19_06242 0.30 +0.3 432,248 - MPMX19_06242 0.30 -2.7 432,248 - MPMX19_06242 0.30 -2.3 432,248 - MPMX19_06242 0.30 +0.3 432,248 - MPMX19_06242 0.30 -1.2 432,268 + MPMX19_06242 0.31 -0.8 432,268 + MPMX19_06242 0.31 -0.1 432,268 + MPMX19_06242 0.31 -0.6 432,268 + MPMX19_06242 0.31 -1.2 432,269 - MPMX19_06242 0.31 -1.0 432,269 - MPMX19_06242 0.31 -1.1 432,269 - MPMX19_06242 0.31 +0.6 432,269 - MPMX19_06242 0.31 +0.6 432,277 + MPMX19_06242 0.31 +0.0 432,277 + MPMX19_06242 0.31 -0.4 432,277 + MPMX19_06242 0.31 -0.2 432,277 + MPMX19_06242 0.31 +1.2 432,278 - MPMX19_06242 0.31 +0.8 432,295 + MPMX19_06242 0.32 -0.4 432,295 + MPMX19_06242 0.32 -1.0 432,295 + MPMX19_06242 0.32 -1.2 432,295 + MPMX19_06242 0.32 -1.0 432,295 + MPMX19_06242 0.32 -1.1 432,296 - MPMX19_06242 0.32 -1.1 432,296 - MPMX19_06242 0.32 -2.0 432,296 - MPMX19_06242 0.32 -2.6 432,310 + MPMX19_06242 0.32 -0.0 432,311 - MPMX19_06242 0.32 -0.0 432,311 - MPMX19_06242 0.32 -0.7
Or see this region's nucleotide sequence