Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06240

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06238 and MPMX19_06239 overlap by 26 nucleotidesMPMX19_06239 and MPMX19_06240 overlap by 4 nucleotidesMPMX19_06240 and MPMX19_06241 are separated by 113 nucleotides MPMX19_06238: MPMX19_06238 - L-aspartate/glutamate-specific racemase, at 427,386 to 428,111 _06238 MPMX19_06239: MPMX19_06239 - Transcriptional regulatory protein BtsR, at 428,086 to 428,814 _06239 MPMX19_06240: MPMX19_06240 - Sensor histidine kinase BtsS, at 428,811 to 430,508 _06240 MPMX19_06241: MPMX19_06241 - hypothetical protein, at 430,622 to 431,422 _06241 Position (kb) 428 429 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 427.875 kb on + strand, within MPMX19_06238at 427.875 kb on + strand, within MPMX19_06238at 427.875 kb on + strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238at 427.876 kb on - strand, within MPMX19_06238at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.318 kb on + strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.319 kb on - strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.345 kb on + strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.346 kb on - strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.513 kb on + strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.514 kb on - strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.549 kb on + strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.550 kb on - strand, within MPMX19_06239at 428.893 kb on + strandat 428.893 kb on + strandat 428.893 kb on + strandat 428.893 kb on + strandat 428.894 kb on - strandat 428.894 kb on - strandat 428.894 kb on - strandat 428.894 kb on - strandat 428.905 kb on + strandat 428.906 kb on - strandat 429.196 kb on + strand, within MPMX19_06240at 429.196 kb on + strand, within MPMX19_06240at 429.196 kb on + strand, within MPMX19_06240at 429.197 kb on - strand, within MPMX19_06240at 429.197 kb on - strand, within MPMX19_06240at 429.424 kb on + strand, within MPMX19_06240at 429.425 kb on - strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.517 kb on + strand, within MPMX19_06240at 429.518 kb on - strand, within MPMX19_06240at 429.613 kb on + strand, within MPMX19_06240at 429.614 kb on - strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.637 kb on + strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 429.638 kb on - strand, within MPMX19_06240at 430.204 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.327 kb on + strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.328 kb on - strand, within MPMX19_06240at 430.363 kb on + strandat 430.364 kb on - strandat 430.364 kb on - strandat 430.364 kb on - strandat 430.364 kb on - strandat 430.438 kb on + strandat 430.439 kb on - strandat 430.453 kb on + strandat 430.453 kb on + strandat 430.453 kb on + strandat 430.532 kb on + strandat 430.533 kb on - strandat 430.561 kb on + strandat 430.561 kb on + strandat 430.561 kb on + strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.562 kb on - strandat 430.605 kb on + strandat 430.605 kb on + strandat 430.606 kb on - strandat 430.619 kb on + strandat 430.942 kb on - strand, within MPMX19_06241at 431.136 kb on + strand, within MPMX19_06241at 431.136 kb on + strand, within MPMX19_06241at 431.136 kb on + strand, within MPMX19_06241at 431.136 kb on + strand, within MPMX19_06241at 431.136 kb on + strand, within MPMX19_06241at 431.137 kb on - strand, within MPMX19_06241at 431.137 kb on - strand, within MPMX19_06241at 431.137 kb on - strand, within MPMX19_06241at 431.137 kb on - strand, within MPMX19_06241at 431.331 kb on + strand, within MPMX19_06241at 431.331 kb on + strand, within MPMX19_06241at 431.331 kb on + strand, within MPMX19_06241at 431.332 kb on - strand, within MPMX19_06241at 431.332 kb on - strand, within MPMX19_06241at 431.332 kb on - strand, within MPMX19_06241at 431.332 kb on - strand, within MPMX19_06241

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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427,875 + MPMX19_06238 0.67 -1.3
427,875 + MPMX19_06238 0.67 -1.1
427,875 + MPMX19_06238 0.67 -1.5
427,876 - MPMX19_06238 0.67 -0.4
427,876 - MPMX19_06238 0.67 +0.6
427,876 - MPMX19_06238 0.67 -0.4
428,318 + MPMX19_06239 0.32 -1.1
428,318 + MPMX19_06239 0.32 -1.0
428,318 + MPMX19_06239 0.32 -0.1
428,318 + MPMX19_06239 0.32 +0.3
428,318 + MPMX19_06239 0.32 +1.1
428,318 + MPMX19_06239 0.32 +0.1
428,318 + MPMX19_06239 0.32 +0.0
428,318 + MPMX19_06239 0.32 -1.7
428,318 + MPMX19_06239 0.32 -0.3
428,319 - MPMX19_06239 0.32 +0.8
428,319 - MPMX19_06239 0.32 -0.1
428,319 - MPMX19_06239 0.32 -1.2
428,319 - MPMX19_06239 0.32 -0.6
428,319 - MPMX19_06239 0.32 +0.5
428,319 - MPMX19_06239 0.32 +0.4
428,319 - MPMX19_06239 0.32 -2.4
428,319 - MPMX19_06239 0.32 -2.9
428,319 - MPMX19_06239 0.32 -0.1
428,319 - MPMX19_06239 0.32 +0.6
428,319 - MPMX19_06239 0.32 +0.3
428,345 + MPMX19_06239 0.36 -1.7
428,345 + MPMX19_06239 0.36 -1.4
428,345 + MPMX19_06239 0.36 -0.1
428,345 + MPMX19_06239 0.36 -1.4
428,345 + MPMX19_06239 0.36 -0.3
428,345 + MPMX19_06239 0.36 -0.4
428,346 - MPMX19_06239 0.36 -0.0
428,346 - MPMX19_06239 0.36 -1.1
428,346 - MPMX19_06239 0.36 -2.1
428,346 - MPMX19_06239 0.36 -1.5
428,346 - MPMX19_06239 0.36 -0.7
428,346 - MPMX19_06239 0.36 -1.7
428,346 - MPMX19_06239 0.36 -0.1
428,346 - MPMX19_06239 0.36 -0.1
428,346 - MPMX19_06239 0.36 +0.4
428,346 - MPMX19_06239 0.36 -0.5
428,513 + MPMX19_06239 0.59 +0.2
428,513 + MPMX19_06239 0.59 -0.8
428,513 + MPMX19_06239 0.59 +0.2
428,513 + MPMX19_06239 0.59 -0.4
428,513 + MPMX19_06239 0.59 +0.6
428,513 + MPMX19_06239 0.59 -1.7
428,513 + MPMX19_06239 0.59 -0.2
428,513 + MPMX19_06239 0.59 -1.8
428,514 - MPMX19_06239 0.59 -0.4
428,514 - MPMX19_06239 0.59 +2.2
428,514 - MPMX19_06239 0.59 +0.9
428,514 - MPMX19_06239 0.59 +0.1
428,549 + MPMX19_06239 0.64 -0.3
428,549 + MPMX19_06239 0.64 +0.5
428,549 + MPMX19_06239 0.64 -0.5
428,549 + MPMX19_06239 0.64 -0.6
428,549 + MPMX19_06239 0.64 -0.6
428,550 - MPMX19_06239 0.64 -0.5
428,550 - MPMX19_06239 0.64 +0.5
428,550 - MPMX19_06239 0.64 +0.9
428,550 - MPMX19_06239 0.64 +0.4
428,893 + -1.0
428,893 + -0.2
428,893 + -0.7
428,893 + -0.0
428,894 - -0.4
428,894 - -3.1
428,894 - -0.1
428,894 - -0.5
428,905 + -1.5
428,906 - -0.8
429,196 + MPMX19_06240 0.23 -0.5
429,196 + MPMX19_06240 0.23 -1.0
429,196 + MPMX19_06240 0.23 -0.2
429,197 - MPMX19_06240 0.23 +1.0
429,197 - MPMX19_06240 0.23 +0.2
429,424 + MPMX19_06240 0.36 -0.1
429,425 - MPMX19_06240 0.36 -0.3
429,517 + MPMX19_06240 0.42 -0.5
429,517 + MPMX19_06240 0.42 -0.6
429,517 + MPMX19_06240 0.42 -1.3
429,517 + MPMX19_06240 0.42 +0.3
429,517 + MPMX19_06240 0.42 -1.5
429,517 + MPMX19_06240 0.42 -0.2
429,518 - MPMX19_06240 0.42 +1.2
429,613 + MPMX19_06240 0.47 +0.6
429,614 - MPMX19_06240 0.47 -1.1
429,637 + MPMX19_06240 0.49 +1.6
429,637 + MPMX19_06240 0.49 -1.0
429,637 + MPMX19_06240 0.49 -1.1
429,637 + MPMX19_06240 0.49 -0.5
429,637 + MPMX19_06240 0.49 -1.6
429,637 + MPMX19_06240 0.49 -2.0
429,637 + MPMX19_06240 0.49 -0.5
429,637 + MPMX19_06240 0.49 -1.0
429,637 + MPMX19_06240 0.49 +1.5
429,638 - MPMX19_06240 0.49 +0.2
429,638 - MPMX19_06240 0.49 -2.4
429,638 - MPMX19_06240 0.49 -0.5
429,638 - MPMX19_06240 0.49 -0.6
429,638 - MPMX19_06240 0.49 -1.8
429,638 - MPMX19_06240 0.49 -1.3
429,638 - MPMX19_06240 0.49 -0.8
429,638 - MPMX19_06240 0.49 +1.2
429,638 - MPMX19_06240 0.49 +0.2
429,638 - MPMX19_06240 0.49 -0.8
429,638 - MPMX19_06240 0.49 -0.3
429,638 - MPMX19_06240 0.49 -0.4
429,638 - MPMX19_06240 0.49 -0.4
429,638 - MPMX19_06240 0.49 -1.1
430,204 + MPMX19_06240 0.82 +0.2
430,327 + MPMX19_06240 0.89 +0.1
430,327 + MPMX19_06240 0.89 -1.0
430,327 + MPMX19_06240 0.89 +0.7
430,327 + MPMX19_06240 0.89 -2.1
430,327 + MPMX19_06240 0.89 +1.3
430,327 + MPMX19_06240 0.89 -0.1
430,327 + MPMX19_06240 0.89 -0.6
430,327 + MPMX19_06240 0.89 -1.7
430,327 + MPMX19_06240 0.89 -1.1
430,328 - MPMX19_06240 0.89 +0.0
430,328 - MPMX19_06240 0.89 -0.6
430,328 - MPMX19_06240 0.89 -1.0
430,328 - MPMX19_06240 0.89 -1.6
430,328 - MPMX19_06240 0.89 -0.8
430,328 - MPMX19_06240 0.89 -1.1
430,328 - MPMX19_06240 0.89 -0.6
430,328 - MPMX19_06240 0.89 -0.6
430,328 - MPMX19_06240 0.89 -0.0
430,363 + +0.6
430,364 - +0.2
430,364 - -1.8
430,364 - +0.2
430,364 - -1.3
430,438 + -0.4
430,439 - +0.1
430,453 + -0.8
430,453 + +0.4
430,453 + -0.2
430,532 + +0.1
430,533 - -1.3
430,561 + +0.2
430,561 + +0.2
430,561 + +0.2
430,562 - -0.6
430,562 - +0.9
430,562 - -0.5
430,562 - +0.5
430,562 - -1.0
430,562 - +0.5
430,562 - +0.3
430,605 + -0.3
430,605 + -0.6
430,606 - -1.3
430,619 + -0.1
430,942 - MPMX19_06241 0.40 -0.4
431,136 + MPMX19_06241 0.64 +0.5
431,136 + MPMX19_06241 0.64 -2.4
431,136 + MPMX19_06241 0.64 -0.7
431,136 + MPMX19_06241 0.64 -1.3
431,136 + MPMX19_06241 0.64 -0.8
431,137 - MPMX19_06241 0.64 +0.1
431,137 - MPMX19_06241 0.64 +2.2
431,137 - MPMX19_06241 0.64 -1.2
431,137 - MPMX19_06241 0.64 -1.4
431,331 + MPMX19_06241 0.89 -1.4
431,331 + MPMX19_06241 0.89 -0.1
431,331 + MPMX19_06241 0.89 -0.3
431,332 - MPMX19_06241 0.89 -2.1
431,332 - MPMX19_06241 0.89 +0.0
431,332 - MPMX19_06241 0.89 -0.1
431,332 - MPMX19_06241 0.89 +1.2

Or see this region's nucleotide sequence