Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06229 and MPMX19_06230 are separated by 374 nucleotides MPMX19_06230 and MPMX19_06231 are separated by 611 nucleotides
MPMX19_06229: MPMX19_06229 - L-arabonate dehydratase, at 415,789 to 417,627
_06229
MPMX19_06230: MPMX19_06230 - hypothetical protein, at 418,002 to 418,658
_06230
MPMX19_06231: MPMX19_06231 - Ribonuclease J, at 419,270 to 420,790
_06231
Position (kb) 418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.055 kb on + strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.056 kb on - strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.124 kb on + strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.125 kb on - strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.166 kb on + strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.167 kb on - strand, within MPMX19_06229 at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.580 kb on + strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.581 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.770 kb on - strand at 417.777 kb on + strand at 417.777 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.899 kb on + strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.900 kb on - strand at 417.906 kb on - strand at 417.912 kb on + strand at 417.943 kb on + strand at 417.944 kb on - strand at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.281 kb on - strand, within MPMX19_06230 at 418.513 kb on + strand, within MPMX19_06230 at 418.522 kb on + strand, within MPMX19_06230 at 418.613 kb on + strand at 418.614 kb on - strand at 418.662 kb on + strand at 418.662 kb on + strand at 418.679 kb on + strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.680 kb on - strand at 418.725 kb on - strand at 418.735 kb on + strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.736 kb on - strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.809 kb on + strand at 418.810 kb on - strand at 418.810 kb on - strand at 418.810 kb on - strand at 418.811 kb on + strand at 418.811 kb on + strand at 418.812 kb on - strand at 418.812 kb on - strand at 418.823 kb on + strand at 418.823 kb on + strand at 418.830 kb on - strand at 418.968 kb on + strand at 418.968 kb on + strand at 418.968 kb on + strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.969 kb on - strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.986 kb on + strand at 418.987 kb on - strand at 418.987 kb on - strand at 419.080 kb on - strand at 419.116 kb on + strand at 419.116 kb on + strand at 419.116 kb on + strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.117 kb on - strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.247 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.258 kb on + strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.259 kb on - strand at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.477 kb on + strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.478 kb on - strand, within MPMX19_06231 at 419.635 kb on + strand, within MPMX19_06231
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 417,055 + MPMX19_06229 0.69 +0.2 417,055 + MPMX19_06229 0.69 -0.1 417,055 + MPMX19_06229 0.69 -0.6 417,055 + MPMX19_06229 0.69 -1.5 417,055 + MPMX19_06229 0.69 -1.1 417,056 - MPMX19_06229 0.69 -0.8 417,056 - MPMX19_06229 0.69 +0.6 417,056 - MPMX19_06229 0.69 -0.5 417,056 - MPMX19_06229 0.69 -0.8 417,056 - MPMX19_06229 0.69 -0.4 417,056 - MPMX19_06229 0.69 -0.7 417,056 - MPMX19_06229 0.69 -1.0 417,124 + MPMX19_06229 0.73 -0.4 417,124 + MPMX19_06229 0.73 +0.5 417,124 + MPMX19_06229 0.73 -0.6 417,124 + MPMX19_06229 0.73 +1.6 417,124 + MPMX19_06229 0.73 -1.0 417,124 + MPMX19_06229 0.73 -1.7 417,124 + MPMX19_06229 0.73 +0.6 417,125 - MPMX19_06229 0.73 +1.6 417,125 - MPMX19_06229 0.73 -0.4 417,125 - MPMX19_06229 0.73 -2.2 417,125 - MPMX19_06229 0.73 -1.5 417,125 - MPMX19_06229 0.73 -0.4 417,125 - MPMX19_06229 0.73 -0.3 417,125 - MPMX19_06229 0.73 -0.8 417,125 - MPMX19_06229 0.73 +0.3 417,125 - MPMX19_06229 0.73 +0.6 417,125 - MPMX19_06229 0.73 -2.3 417,125 - MPMX19_06229 0.73 -0.8 417,166 + MPMX19_06229 0.75 -0.6 417,166 + MPMX19_06229 0.75 +1.2 417,166 + MPMX19_06229 0.75 -1.7 417,166 + MPMX19_06229 0.75 -0.9 417,166 + MPMX19_06229 0.75 +0.0 417,166 + MPMX19_06229 0.75 -0.5 417,166 + MPMX19_06229 0.75 -0.7 417,167 - MPMX19_06229 0.75 -0.1 417,167 - MPMX19_06229 0.75 -0.2 417,167 - MPMX19_06229 0.75 -0.1 417,167 - MPMX19_06229 0.75 +0.4 417,167 - MPMX19_06229 0.75 -0.7 417,167 - MPMX19_06229 0.75 +0.4 417,167 - MPMX19_06229 0.75 -0.3 417,167 - MPMX19_06229 0.75 +0.0 417,580 + -1.6 417,580 + +0.7 417,580 + -1.9 417,580 + -0.2 417,580 + -0.7 417,581 - -0.9 417,581 - -0.8 417,581 - -0.5 417,581 - -0.2 417,770 - +0.6 417,770 - +1.0 417,770 - -0.9 417,770 - +0.6 417,770 - +0.2 417,777 + -2.7 417,777 + +1.2 417,899 + -0.2 417,899 + -1.2 417,899 + +0.2 417,899 + +1.6 417,899 + -2.1 417,899 + -1.8 417,899 + +1.3 417,899 + -0.7 417,900 - -0.6 417,900 - -0.9 417,900 - -0.8 417,900 - -0.6 417,900 - +0.5 417,900 - -0.7 417,900 - -1.9 417,900 - -1.1 417,900 - +0.4 417,906 - -0.0 417,912 + -0.7 417,943 + -1.0 417,944 - -0.6 418,281 - MPMX19_06230 0.42 -1.3 418,281 - MPMX19_06230 0.42 +0.2 418,281 - MPMX19_06230 0.42 -0.4 418,513 + MPMX19_06230 0.78 -1.2 418,522 + MPMX19_06230 0.79 -0.6 418,613 + +0.6 418,614 - -0.2 418,662 + -0.3 418,662 + +0.9 418,679 + -1.1 418,680 - +0.2 418,680 - -0.8 418,680 - -0.7 418,680 - +0.0 418,680 - -0.7 418,725 - +0.1 418,735 + +0.2 418,736 - -1.5 418,736 - -1.7 418,736 - +0.5 418,736 - -1.1 418,809 + +0.2 418,809 + +0.6 418,809 + +0.6 418,809 + -0.3 418,810 - +0.6 418,810 - +1.5 418,810 - +1.3 418,811 + +0.2 418,811 + +1.5 418,812 - +0.7 418,812 - -1.5 418,823 + -0.6 418,823 + -1.1 418,830 - +0.6 418,968 + -1.6 418,968 + -0.1 418,968 + +0.4 418,969 - +0.1 418,969 - +0.9 418,969 - -0.1 418,969 - -0.5 418,969 - -1.1 418,969 - -1.1 418,986 + -1.4 418,986 + +0.8 418,986 + -0.5 418,986 + -0.0 418,987 - -0.6 418,987 - -0.1 419,080 - -0.3 419,116 + -0.4 419,116 + -0.7 419,116 + -0.9 419,117 - +0.0 419,117 - -1.3 419,117 - -1.0 419,117 - -0.9 419,117 - -0.6 419,117 - -0.2 419,117 - +0.0 419,117 - -2.2 419,247 + -0.8 419,247 + -1.3 419,247 + +0.8 419,247 + +3.2 419,258 + -0.7 419,258 + -0.5 419,258 + -0.9 419,258 + -0.8 419,258 + -0.8 419,259 - -1.1 419,259 - -1.3 419,259 - -1.1 419,259 - +0.2 419,259 - -1.8 419,477 + MPMX19_06231 0.14 +1.6 419,477 + MPMX19_06231 0.14 -1.6 419,477 + MPMX19_06231 0.14 -1.8 419,477 + MPMX19_06231 0.14 -0.6 419,477 + MPMX19_06231 0.14 -0.6 419,477 + MPMX19_06231 0.14 -0.1 419,477 + MPMX19_06231 0.14 -1.4 419,478 - MPMX19_06231 0.14 +0.4 419,478 - MPMX19_06231 0.14 -2.8 419,478 - MPMX19_06231 0.14 -0.6 419,635 + MPMX19_06231 0.24 -1.6
Or see this region's nucleotide sequence