Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06224

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06223 and MPMX19_06224 are separated by 165 nucleotidesMPMX19_06224 and MPMX19_06225 are separated by 84 nucleotides MPMX19_06223: MPMX19_06223 - HTH-type transcriptional regulator GbpR, at 407,960 to 408,952 _06223 MPMX19_06224: MPMX19_06224 - Multiple sugar-binding periplasmic protein SbpA, at 409,118 to 410,209 _06224 MPMX19_06225: MPMX19_06225 - Xylose import ATP-binding protein XylG, at 410,294 to 411,889 _06225 Position (kb) 409 410 411Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 408.182 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.458 kb on + strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.459 kb on - strand, within MPMX19_06223at 408.480 kb on - strand, within MPMX19_06223at 408.480 kb on - strand, within MPMX19_06223at 408.818 kb on + strand, within MPMX19_06223at 408.819 kb on - strand, within MPMX19_06223at 409.094 kb on + strandat 409.094 kb on + strandat 409.098 kb on - strandat 409.098 kb on - strandat 409.098 kb on - strandat 409.098 kb on - strandat 409.298 kb on + strand, within MPMX19_06224at 409.298 kb on + strand, within MPMX19_06224at 409.299 kb on - strand, within MPMX19_06224at 409.316 kb on + strand, within MPMX19_06224at 409.317 kb on - strand, within MPMX19_06224at 409.334 kb on + strand, within MPMX19_06224at 409.334 kb on + strand, within MPMX19_06224at 409.335 kb on - strand, within MPMX19_06224at 409.335 kb on - strand, within MPMX19_06224at 409.335 kb on - strand, within MPMX19_06224at 409.335 kb on - strand, within MPMX19_06224at 409.335 kb on - strand, within MPMX19_06224at 409.484 kb on + strand, within MPMX19_06224at 409.484 kb on + strand, within MPMX19_06224at 409.484 kb on + strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.485 kb on - strand, within MPMX19_06224at 409.520 kb on + strand, within MPMX19_06224at 409.520 kb on + strand, within MPMX19_06224at 409.520 kb on + strand, within MPMX19_06224at 409.520 kb on + strand, within MPMX19_06224at 409.521 kb on - strand, within MPMX19_06224at 409.521 kb on - strand, within MPMX19_06224at 409.521 kb on - strand, within MPMX19_06224at 409.521 kb on - strand, within MPMX19_06224at 409.523 kb on + strand, within MPMX19_06224at 409.523 kb on + strand, within MPMX19_06224at 409.524 kb on - strand, within MPMX19_06224at 409.524 kb on - strand, within MPMX19_06224at 409.524 kb on - strand, within MPMX19_06224at 409.524 kb on - strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.568 kb on + strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.569 kb on - strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.655 kb on + strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.656 kb on - strand, within MPMX19_06224at 409.664 kb on + strand, within MPMX19_06224at 409.664 kb on + strand, within MPMX19_06224at 409.664 kb on + strand, within MPMX19_06224at 409.664 kb on + strand, within MPMX19_06224at 409.664 kb on + strand, within MPMX19_06224at 409.665 kb on - strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.694 kb on + strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.695 kb on - strand, within MPMX19_06224at 409.811 kb on + strand, within MPMX19_06224at 409.811 kb on + strand, within MPMX19_06224at 409.811 kb on + strand, within MPMX19_06224at 409.811 kb on + strand, within MPMX19_06224at 409.811 kb on + strand, within MPMX19_06224at 409.812 kb on - strand, within MPMX19_06224at 409.812 kb on - strand, within MPMX19_06224at 409.812 kb on - strand, within MPMX19_06224at 409.814 kb on + strand, within MPMX19_06224at 409.814 kb on + strand, within MPMX19_06224at 409.814 kb on + strand, within MPMX19_06224at 409.814 kb on + strand, within MPMX19_06224at 409.815 kb on - strand, within MPMX19_06224at 409.815 kb on - strand, within MPMX19_06224at 409.815 kb on - strand, within MPMX19_06224at 409.850 kb on + strand, within MPMX19_06224at 409.850 kb on + strand, within MPMX19_06224at 409.851 kb on - strand, within MPMX19_06224at 409.898 kb on + strand, within MPMX19_06224at 410.090 kb on + strand, within MPMX19_06224at 410.090 kb on + strand, within MPMX19_06224at 410.090 kb on + strand, within MPMX19_06224at 410.090 kb on + strand, within MPMX19_06224at 410.091 kb on - strand, within MPMX19_06224at 410.091 kb on - strand, within MPMX19_06224at 410.091 kb on - strand, within MPMX19_06224at 410.091 kb on - strand, within MPMX19_06224at 410.091 kb on - strand, within MPMX19_06224at 410.120 kb on + strandat 410.120 kb on + strandat 410.120 kb on + strandat 410.120 kb on + strandat 410.121 kb on - strandat 410.121 kb on - strandat 410.121 kb on - strandat 410.121 kb on - strandat 410.121 kb on - strandat 410.121 kb on - strandat 410.121 kb on - strandat 410.183 kb on + strandat 410.183 kb on + strandat 410.184 kb on - strandat 410.184 kb on - strandat 410.186 kb on + strandat 410.186 kb on + strandat 410.186 kb on + strandat 410.186 kb on + strandat 410.186 kb on + strandat 410.186 kb on + strandat 410.186 kb on + strandat 410.186 kb on + strandat 410.186 kb on + strandat 410.186 kb on + strandat 410.187 kb on - strandat 410.187 kb on - strandat 410.187 kb on - strandat 410.187 kb on - strandat 410.187 kb on - strandat 410.187 kb on - strandat 410.187 kb on - strandat 410.187 kb on - strandat 410.187 kb on - strandat 410.453 kb on + strandat 410.453 kb on + strandat 410.453 kb on + strandat 410.453 kb on + strandat 410.468 kb on + strand, within MPMX19_06225at 410.468 kb on + strand, within MPMX19_06225at 410.468 kb on + strand, within MPMX19_06225at 410.468 kb on + strand, within MPMX19_06225at 410.468 kb on + strand, within MPMX19_06225at 410.468 kb on + strand, within MPMX19_06225at 410.468 kb on + strand, within MPMX19_06225at 410.468 kb on + strand, within MPMX19_06225at 410.469 kb on - strand, within MPMX19_06225at 410.469 kb on - strand, within MPMX19_06225at 410.469 kb on - strand, within MPMX19_06225at 410.469 kb on - strand, within MPMX19_06225at 410.469 kb on - strand, within MPMX19_06225at 410.469 kb on - strand, within MPMX19_06225at 410.469 kb on - strand, within MPMX19_06225at 410.469 kb on - strand, within MPMX19_06225at 410.469 kb on - strand, within MPMX19_06225at 410.469 kb on - strand, within MPMX19_06225at 410.469 kb on - strand, within MPMX19_06225

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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408,182 + MPMX19_06223 0.22 +0.2
408,458 + MPMX19_06223 0.50 -1.7
408,458 + MPMX19_06223 0.50 -0.6
408,458 + MPMX19_06223 0.50 +0.3
408,458 + MPMX19_06223 0.50 +0.1
408,459 - MPMX19_06223 0.50 -0.8
408,459 - MPMX19_06223 0.50 -0.4
408,459 - MPMX19_06223 0.50 +1.9
408,459 - MPMX19_06223 0.50 -1.6
408,459 - MPMX19_06223 0.50 -1.0
408,480 - MPMX19_06223 0.52 -0.1
408,480 - MPMX19_06223 0.52 -0.6
408,818 + MPMX19_06223 0.86 +0.9
408,819 - MPMX19_06223 0.87 +1.2
409,094 + -0.3
409,094 + -1.4
409,098 - -1.7
409,098 - +0.2
409,098 - -1.0
409,098 - +1.8
409,298 + MPMX19_06224 0.16 -1.6
409,298 + MPMX19_06224 0.16 -0.8
409,299 - MPMX19_06224 0.17 -0.1
409,316 + MPMX19_06224 0.18 +1.5
409,317 - MPMX19_06224 0.18 -0.5
409,334 + MPMX19_06224 0.20 +1.0
409,334 + MPMX19_06224 0.20 -1.3
409,335 - MPMX19_06224 0.20 -1.1
409,335 - MPMX19_06224 0.20 +0.2
409,335 - MPMX19_06224 0.20 -0.8
409,335 - MPMX19_06224 0.20 -0.6
409,335 - MPMX19_06224 0.20 -0.6
409,484 + MPMX19_06224 0.34 +0.2
409,484 + MPMX19_06224 0.34 -2.0
409,484 + MPMX19_06224 0.34 +1.2
409,485 - MPMX19_06224 0.34 -0.4
409,485 - MPMX19_06224 0.34 -1.6
409,485 - MPMX19_06224 0.34 -0.8
409,485 - MPMX19_06224 0.34 +1.2
409,485 - MPMX19_06224 0.34 +0.5
409,485 - MPMX19_06224 0.34 +0.0
409,485 - MPMX19_06224 0.34 +1.4
409,520 + MPMX19_06224 0.37 -0.3
409,520 + MPMX19_06224 0.37 -0.5
409,520 + MPMX19_06224 0.37 +0.3
409,520 + MPMX19_06224 0.37 +0.0
409,521 - MPMX19_06224 0.37 -1.0
409,521 - MPMX19_06224 0.37 -0.1
409,521 - MPMX19_06224 0.37 -0.2
409,521 - MPMX19_06224 0.37 -0.6
409,523 + MPMX19_06224 0.37 -3.0
409,523 + MPMX19_06224 0.37 -1.0
409,524 - MPMX19_06224 0.37 -1.1
409,524 - MPMX19_06224 0.37 -0.7
409,524 - MPMX19_06224 0.37 -1.0
409,524 - MPMX19_06224 0.37 +0.2
409,568 + MPMX19_06224 0.41 -0.8
409,568 + MPMX19_06224 0.41 -1.1
409,568 + MPMX19_06224 0.41 +0.3
409,568 + MPMX19_06224 0.41 -1.4
409,568 + MPMX19_06224 0.41 -1.0
409,568 + MPMX19_06224 0.41 -1.3
409,568 + MPMX19_06224 0.41 -2.5
409,568 + MPMX19_06224 0.41 +0.1
409,568 + MPMX19_06224 0.41 -0.7
409,569 - MPMX19_06224 0.41 -0.7
409,569 - MPMX19_06224 0.41 +1.4
409,569 - MPMX19_06224 0.41 +1.6
409,569 - MPMX19_06224 0.41 +1.2
409,569 - MPMX19_06224 0.41 +1.3
409,569 - MPMX19_06224 0.41 -1.3
409,569 - MPMX19_06224 0.41 +0.3
409,569 - MPMX19_06224 0.41 +0.9
409,655 + MPMX19_06224 0.49 -1.1
409,655 + MPMX19_06224 0.49 -0.0
409,655 + MPMX19_06224 0.49 -0.6
409,655 + MPMX19_06224 0.49 -2.2
409,655 + MPMX19_06224 0.49 +0.0
409,655 + MPMX19_06224 0.49 +2.0
409,656 - MPMX19_06224 0.49 +0.0
409,656 - MPMX19_06224 0.49 +0.9
409,656 - MPMX19_06224 0.49 +1.2
409,656 - MPMX19_06224 0.49 -0.6
409,656 - MPMX19_06224 0.49 -0.1
409,656 - MPMX19_06224 0.49 -0.3
409,664 + MPMX19_06224 0.50 -1.8
409,664 + MPMX19_06224 0.50 +0.6
409,664 + MPMX19_06224 0.50 -0.2
409,664 + MPMX19_06224 0.50 +0.1
409,664 + MPMX19_06224 0.50 -0.0
409,665 - MPMX19_06224 0.50 +0.3
409,694 + MPMX19_06224 0.53 +0.1
409,694 + MPMX19_06224 0.53 -1.7
409,694 + MPMX19_06224 0.53 -1.2
409,694 + MPMX19_06224 0.53 +0.1
409,694 + MPMX19_06224 0.53 -1.6
409,694 + MPMX19_06224 0.53 -1.5
409,694 + MPMX19_06224 0.53 +0.3
409,694 + MPMX19_06224 0.53 -0.8
409,694 + MPMX19_06224 0.53 -0.5
409,694 + MPMX19_06224 0.53 -0.7
409,695 - MPMX19_06224 0.53 -0.6
409,695 - MPMX19_06224 0.53 -1.1
409,695 - MPMX19_06224 0.53 +0.5
409,695 - MPMX19_06224 0.53 -0.5
409,695 - MPMX19_06224 0.53 +0.9
409,695 - MPMX19_06224 0.53 -0.3
409,695 - MPMX19_06224 0.53 -2.4
409,811 + MPMX19_06224 0.63 -0.6
409,811 + MPMX19_06224 0.63 +0.1
409,811 + MPMX19_06224 0.63 -0.6
409,811 + MPMX19_06224 0.63 +0.3
409,811 + MPMX19_06224 0.63 +0.7
409,812 - MPMX19_06224 0.64 +0.8
409,812 - MPMX19_06224 0.64 -0.7
409,812 - MPMX19_06224 0.64 -0.1
409,814 + MPMX19_06224 0.64 -0.6
409,814 + MPMX19_06224 0.64 +0.6
409,814 + MPMX19_06224 0.64 -0.3
409,814 + MPMX19_06224 0.64 +0.0
409,815 - MPMX19_06224 0.64 -0.5
409,815 - MPMX19_06224 0.64 +1.2
409,815 - MPMX19_06224 0.64 -0.8
409,850 + MPMX19_06224 0.67 -1.1
409,850 + MPMX19_06224 0.67 -0.4
409,851 - MPMX19_06224 0.67 -1.0
409,898 + MPMX19_06224 0.71 -0.0
410,090 + MPMX19_06224 0.89 -1.3
410,090 + MPMX19_06224 0.89 -0.6
410,090 + MPMX19_06224 0.89 +1.4
410,090 + MPMX19_06224 0.89 -0.3
410,091 - MPMX19_06224 0.89 +0.2
410,091 - MPMX19_06224 0.89 -0.5
410,091 - MPMX19_06224 0.89 -0.7
410,091 - MPMX19_06224 0.89 -0.2
410,091 - MPMX19_06224 0.89 -0.8
410,120 + -0.1
410,120 + +0.6
410,120 + -2.1
410,120 + +0.6
410,121 - -0.2
410,121 - -0.4
410,121 - -0.2
410,121 - -0.9
410,121 - -1.0
410,121 - +0.6
410,121 - -0.8
410,183 + -0.8
410,183 + -2.6
410,184 - -1.0
410,184 - -0.1
410,186 + -0.5
410,186 + -1.3
410,186 + -0.9
410,186 + +0.2
410,186 + -0.5
410,186 + +0.1
410,186 + +0.4
410,186 + +0.0
410,186 + -1.3
410,186 + -1.5
410,187 - +0.3
410,187 - -0.4
410,187 - -0.5
410,187 - -0.7
410,187 - -2.6
410,187 - +0.8
410,187 - +0.1
410,187 - -1.0
410,187 - -0.4
410,453 + -0.5
410,453 + -1.8
410,453 + +1.2
410,453 + -0.3
410,468 + MPMX19_06225 0.11 -0.6
410,468 + MPMX19_06225 0.11 -0.1
410,468 + MPMX19_06225 0.11 -1.5
410,468 + MPMX19_06225 0.11 -1.6
410,468 + MPMX19_06225 0.11 +0.6
410,468 + MPMX19_06225 0.11 -1.3
410,468 + MPMX19_06225 0.11 -1.3
410,468 + MPMX19_06225 0.11 +0.2
410,469 - MPMX19_06225 0.11 +0.7
410,469 - MPMX19_06225 0.11 +0.2
410,469 - MPMX19_06225 0.11 -0.4
410,469 - MPMX19_06225 0.11 -0.7
410,469 - MPMX19_06225 0.11 -3.0
410,469 - MPMX19_06225 0.11 +0.6
410,469 - MPMX19_06225 0.11 +0.0
410,469 - MPMX19_06225 0.11 -1.4
410,469 - MPMX19_06225 0.11 -0.0
410,469 - MPMX19_06225 0.11 +0.3
410,469 - MPMX19_06225 0.11 -1.8

Or see this region's nucleotide sequence