Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06220 and MPMX19_06221 are separated by 43 nucleotides MPMX19_06221 and MPMX19_06222 are separated by 56 nucleotides
MPMX19_06220: MPMX19_06220 - Alpha-ketoglutaric semialdehyde dehydrogenase 2, at 404,255 to 405,835
_06220
MPMX19_06221: MPMX19_06221 - L-2-keto-3-deoxyarabonate dehydratase, at 405,879 to 406,805
_06221
MPMX19_06222: MPMX19_06222 - 6-deoxy-6-sulfogluconolactonase, at 406,862 to 407,746
_06222
Position (kb)
405
406
407 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 405.048 kb on + strand, within MPMX19_06220 at 405.048 kb on + strand, within MPMX19_06220 at 405.048 kb on + strand, within MPMX19_06220 at 405.048 kb on + strand, within MPMX19_06220 at 405.850 kb on + strand at 405.850 kb on + strand at 405.850 kb on + strand at 405.851 kb on - strand at 405.851 kb on - strand at 405.851 kb on - strand at 405.851 kb on - strand at 405.851 kb on - strand at 405.851 kb on - strand at 406.078 kb on + strand, within MPMX19_06221 at 406.078 kb on + strand, within MPMX19_06221 at 406.079 kb on - strand, within MPMX19_06221 at 406.079 kb on - strand, within MPMX19_06221 at 406.114 kb on + strand, within MPMX19_06221 at 406.115 kb on - strand, within MPMX19_06221 at 406.115 kb on - strand, within MPMX19_06221 at 406.303 kb on + strand, within MPMX19_06221 at 406.303 kb on + strand, within MPMX19_06221 at 406.303 kb on + strand, within MPMX19_06221 at 406.303 kb on + strand, within MPMX19_06221 at 406.304 kb on - strand, within MPMX19_06221 at 406.304 kb on - strand, within MPMX19_06221 at 406.304 kb on - strand, within MPMX19_06221 at 406.304 kb on - strand, within MPMX19_06221 at 406.471 kb on + strand, within MPMX19_06221 at 406.471 kb on + strand, within MPMX19_06221 at 406.472 kb on - strand, within MPMX19_06221 at 406.472 kb on - strand, within MPMX19_06221 at 406.811 kb on + strand at 407.189 kb on + strand, within MPMX19_06222 at 407.220 kb on + strand, within MPMX19_06222 at 407.220 kb on + strand, within MPMX19_06222 at 407.220 kb on + strand, within MPMX19_06222 at 407.220 kb on + strand, within MPMX19_06222 at 407.220 kb on + strand, within MPMX19_06222 at 407.220 kb on + strand, within MPMX19_06222 at 407.220 kb on + strand, within MPMX19_06222 at 407.220 kb on + strand, within MPMX19_06222 at 407.220 kb on + strand, within MPMX19_06222 at 407.221 kb on - strand, within MPMX19_06222 at 407.221 kb on - strand, within MPMX19_06222 at 407.221 kb on - strand, within MPMX19_06222 at 407.250 kb on + strand, within MPMX19_06222 at 407.250 kb on + strand, within MPMX19_06222 at 407.250 kb on + strand, within MPMX19_06222 at 407.250 kb on + strand, within MPMX19_06222 at 407.250 kb on + strand, within MPMX19_06222 at 407.250 kb on + strand, within MPMX19_06222 at 407.251 kb on - strand, within MPMX19_06222 at 407.251 kb on - strand, within MPMX19_06222 at 407.251 kb on - strand, within MPMX19_06222 at 407.251 kb on - strand, within MPMX19_06222 at 407.251 kb on - strand, within MPMX19_06222 at 407.251 kb on - strand, within MPMX19_06222 at 407.251 kb on - strand, within MPMX19_06222 at 407.251 kb on - strand, within MPMX19_06222 at 407.251 kb on - strand, within MPMX19_06222 at 407.251 kb on - strand, within MPMX19_06222 at 407.298 kb on + strand, within MPMX19_06222 at 407.298 kb on + strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.299 kb on - strand, within MPMX19_06222 at 407.343 kb on + strand, within MPMX19_06222 at 407.343 kb on + strand, within MPMX19_06222 at 407.343 kb on + strand, within MPMX19_06222 at 407.344 kb on - strand, within MPMX19_06222 at 407.344 kb on - strand, within MPMX19_06222 at 407.651 kb on - strand, within MPMX19_06222 at 407.661 kb on + strand at 407.661 kb on + strand at 407.661 kb on + strand at 407.662 kb on - strand at 407.662 kb on - strand at 407.753 kb on + strand at 407.753 kb on + strand at 407.753 kb on + strand at 407.753 kb on + strand at 407.753 kb on + strand at 407.753 kb on + strand at 407.754 kb on - strand at 407.754 kb on - strand at 407.754 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 405,048 + MPMX19_06220 0.50 +0.2 405,048 + MPMX19_06220 0.50 -0.1 405,048 + MPMX19_06220 0.50 +1.3 405,048 + MPMX19_06220 0.50 -0.8 405,850 + +0.2 405,850 + -0.6 405,850 + -0.5 405,851 - +0.2 405,851 - -0.4 405,851 - -0.4 405,851 - +0.2 405,851 - -0.4 405,851 - -0.5 406,078 + MPMX19_06221 0.21 +2.0 406,078 + MPMX19_06221 0.21 -1.1 406,079 - MPMX19_06221 0.22 -0.8 406,079 - MPMX19_06221 0.22 +0.4 406,114 + MPMX19_06221 0.25 +0.2 406,115 - MPMX19_06221 0.25 +0.7 406,115 - MPMX19_06221 0.25 -0.0 406,303 + MPMX19_06221 0.46 -0.3 406,303 + MPMX19_06221 0.46 +1.5 406,303 + MPMX19_06221 0.46 -0.5 406,303 + MPMX19_06221 0.46 +0.2 406,304 - MPMX19_06221 0.46 +0.4 406,304 - MPMX19_06221 0.46 +0.7 406,304 - MPMX19_06221 0.46 +0.9 406,304 - MPMX19_06221 0.46 -0.1 406,471 + MPMX19_06221 0.64 -1.5 406,471 + MPMX19_06221 0.64 -0.6 406,472 - MPMX19_06221 0.64 +0.3 406,472 - MPMX19_06221 0.64 +0.8 406,811 + -0.1 407,189 + MPMX19_06222 0.37 +0.6 407,220 + MPMX19_06222 0.40 +0.9 407,220 + MPMX19_06222 0.40 +1.0 407,220 + MPMX19_06222 0.40 -0.9 407,220 + MPMX19_06222 0.40 +0.1 407,220 + MPMX19_06222 0.40 -0.6 407,220 + MPMX19_06222 0.40 +0.3 407,220 + MPMX19_06222 0.40 +0.4 407,220 + MPMX19_06222 0.40 +0.5 407,220 + MPMX19_06222 0.40 -1.3 407,221 - MPMX19_06222 0.41 -1.5 407,221 - MPMX19_06222 0.41 +1.6 407,221 - MPMX19_06222 0.41 -2.1 407,250 + MPMX19_06222 0.44 -1.3 407,250 + MPMX19_06222 0.44 -0.4 407,250 + MPMX19_06222 0.44 -1.8 407,250 + MPMX19_06222 0.44 -1.3 407,250 + MPMX19_06222 0.44 -0.1 407,250 + MPMX19_06222 0.44 -0.9 407,251 - MPMX19_06222 0.44 -1.3 407,251 - MPMX19_06222 0.44 -1.1 407,251 - MPMX19_06222 0.44 +1.0 407,251 - MPMX19_06222 0.44 -0.5 407,251 - MPMX19_06222 0.44 -0.9 407,251 - MPMX19_06222 0.44 -1.4 407,251 - MPMX19_06222 0.44 -0.1 407,251 - MPMX19_06222 0.44 +0.1 407,251 - MPMX19_06222 0.44 +0.1 407,251 - MPMX19_06222 0.44 -0.2 407,298 + MPMX19_06222 0.49 -0.8 407,298 + MPMX19_06222 0.49 -0.3 407,299 - MPMX19_06222 0.49 -1.4 407,299 - MPMX19_06222 0.49 -0.1 407,299 - MPMX19_06222 0.49 -0.4 407,299 - MPMX19_06222 0.49 -0.5 407,299 - MPMX19_06222 0.49 -0.9 407,299 - MPMX19_06222 0.49 +0.8 407,299 - MPMX19_06222 0.49 -0.8 407,299 - MPMX19_06222 0.49 -1.1 407,299 - MPMX19_06222 0.49 -0.3 407,299 - MPMX19_06222 0.49 -1.5 407,299 - MPMX19_06222 0.49 -0.0 407,299 - MPMX19_06222 0.49 +1.1 407,343 + MPMX19_06222 0.54 +1.2 407,343 + MPMX19_06222 0.54 +0.3 407,343 + MPMX19_06222 0.54 +0.5 407,344 - MPMX19_06222 0.54 +0.0 407,344 - MPMX19_06222 0.54 +1.2 407,651 - MPMX19_06222 0.89 +0.2 407,661 + -0.0 407,661 + -0.6 407,661 + +0.1 407,662 - -0.1 407,662 - -1.3 407,753 + -1.0 407,753 + -0.7 407,753 + -0.9 407,753 + -0.9 407,753 + -0.6 407,753 + +0.2 407,754 - -1.1 407,754 - -1.0 407,754 - -0.2
Or see this region's nucleotide sequence