Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06216 and MPMX19_06217 overlap by 4 nucleotides MPMX19_06217 and MPMX19_06218 are separated by 91 nucleotides
MPMX19_06216: MPMX19_06216 - Inner membrane ABC transporter permease protein YtfT, at 398,784 to 399,827
_06216
MPMX19_06217: MPMX19_06217 - Fructose import ATP-binding protein FruK, at 399,824 to 401,383
_06217
MPMX19_06218: MPMX19_06218 - ABC transporter periplasmic-binding protein YtfQ, at 401,475 to 402,443
_06218
Position (kb) 399
400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 399.169 kb on + strand, within MPMX19_06216 at 399.169 kb on + strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.170 kb on - strand, within MPMX19_06216 at 399.784 kb on + strand at 399.784 kb on + strand at 399.784 kb on + strand at 399.785 kb on - strand at 399.785 kb on - strand at 399.785 kb on - strand at 399.785 kb on - strand at 399.785 kb on - strand at 399.854 kb on + strand at 399.855 kb on - strand at 399.855 kb on - strand at 399.855 kb on - strand at 399.855 kb on - strand at 399.967 kb on - strand at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.749 kb on + strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.750 kb on - strand, within MPMX19_06217 at 400.978 kb on - strand, within MPMX19_06217 at 401.106 kb on + strand, within MPMX19_06217 at 401.106 kb on + strand, within MPMX19_06217 at 401.107 kb on - strand, within MPMX19_06217 at 401.107 kb on - strand, within MPMX19_06217 at 401.199 kb on + strand, within MPMX19_06217 at 401.200 kb on - strand, within MPMX19_06217 at 401.200 kb on - strand, within MPMX19_06217 at 401.200 kb on - strand, within MPMX19_06217 at 401.479 kb on + strand at 401.479 kb on + strand at 401.480 kb on - strand at 401.480 kb on - strand at 401.480 kb on - strand at 401.500 kb on + strand at 401.500 kb on + strand at 401.500 kb on + strand at 401.500 kb on + strand at 401.500 kb on + strand at 401.500 kb on + strand at 401.501 kb on - strand at 401.501 kb on - strand at 401.501 kb on - strand at 401.501 kb on - strand at 401.599 kb on + strand, within MPMX19_06218 at 401.599 kb on + strand, within MPMX19_06218 at 401.599 kb on + strand, within MPMX19_06218 at 401.599 kb on + strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.600 kb on - strand, within MPMX19_06218 at 401.779 kb on + strand, within MPMX19_06218 at 401.780 kb on - strand, within MPMX19_06218 at 401.780 kb on - strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.061 kb on + strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218 at 402.062 kb on - strand, within MPMX19_06218
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 399,169 + MPMX19_06216 0.37 +0.4 399,169 + MPMX19_06216 0.37 +0.1 399,170 - MPMX19_06216 0.37 +0.2 399,170 - MPMX19_06216 0.37 -0.6 399,170 - MPMX19_06216 0.37 -1.1 399,170 - MPMX19_06216 0.37 -1.1 399,170 - MPMX19_06216 0.37 -1.4 399,170 - MPMX19_06216 0.37 -2.3 399,170 - MPMX19_06216 0.37 +1.0 399,170 - MPMX19_06216 0.37 +0.6 399,170 - MPMX19_06216 0.37 +0.2 399,170 - MPMX19_06216 0.37 -0.0 399,170 - MPMX19_06216 0.37 +0.0 399,170 - MPMX19_06216 0.37 -0.4 399,170 - MPMX19_06216 0.37 -0.4 399,170 - MPMX19_06216 0.37 +0.2 399,784 + +1.2 399,784 + -1.6 399,784 + -0.5 399,785 - +0.1 399,785 - +1.0 399,785 - -0.0 399,785 - +2.6 399,785 - -1.0 399,854 + +0.0 399,855 - -1.0 399,855 - +0.0 399,855 - -0.7 399,855 - -0.7 399,967 - -0.1 400,749 + MPMX19_06217 0.59 +0.4 400,749 + MPMX19_06217 0.59 +0.7 400,749 + MPMX19_06217 0.59 -1.9 400,749 + MPMX19_06217 0.59 -1.4 400,749 + MPMX19_06217 0.59 +0.1 400,749 + MPMX19_06217 0.59 +0.9 400,749 + MPMX19_06217 0.59 +0.6 400,749 + MPMX19_06217 0.59 -0.3 400,750 - MPMX19_06217 0.59 +0.1 400,750 - MPMX19_06217 0.59 +0.8 400,750 - MPMX19_06217 0.59 -0.3 400,750 - MPMX19_06217 0.59 +0.8 400,750 - MPMX19_06217 0.59 -1.3 400,750 - MPMX19_06217 0.59 +0.3 400,750 - MPMX19_06217 0.59 -0.4 400,978 - MPMX19_06217 0.74 -1.0 401,106 + MPMX19_06217 0.82 +0.9 401,106 + MPMX19_06217 0.82 -0.7 401,107 - MPMX19_06217 0.82 -1.0 401,107 - MPMX19_06217 0.82 +0.1 401,199 + MPMX19_06217 0.88 +0.0 401,200 - MPMX19_06217 0.88 -1.4 401,200 - MPMX19_06217 0.88 -2.8 401,200 - MPMX19_06217 0.88 -0.5 401,479 + +0.9 401,479 + -0.6 401,480 - -0.3 401,480 - -2.7 401,480 - -1.6 401,500 + +0.6 401,500 + -0.6 401,500 + -0.1 401,500 + -0.6 401,500 + +0.1 401,500 + -0.1 401,501 - +0.2 401,501 - -1.3 401,501 - +0.2 401,501 - -2.2 401,599 + MPMX19_06218 0.13 +0.9 401,599 + MPMX19_06218 0.13 -1.4 401,599 + MPMX19_06218 0.13 +0.6 401,599 + MPMX19_06218 0.13 -0.3 401,600 - MPMX19_06218 0.13 -0.2 401,600 - MPMX19_06218 0.13 -0.2 401,600 - MPMX19_06218 0.13 -1.3 401,600 - MPMX19_06218 0.13 -0.3 401,600 - MPMX19_06218 0.13 -1.5 401,600 - MPMX19_06218 0.13 -1.6 401,600 - MPMX19_06218 0.13 -0.1 401,779 + MPMX19_06218 0.31 +1.0 401,780 - MPMX19_06218 0.31 -1.6 401,780 - MPMX19_06218 0.31 +1.0 402,061 + MPMX19_06218 0.60 -0.1 402,061 + MPMX19_06218 0.60 +0.0 402,061 + MPMX19_06218 0.60 +0.2 402,061 + MPMX19_06218 0.60 +2.2 402,061 + MPMX19_06218 0.60 -0.1 402,061 + MPMX19_06218 0.60 -0.7 402,061 + MPMX19_06218 0.60 +0.6 402,061 + MPMX19_06218 0.60 -0.5 402,061 + MPMX19_06218 0.60 -0.1 402,061 + MPMX19_06218 0.60 -0.8 402,061 + MPMX19_06218 0.60 +0.0 402,061 + MPMX19_06218 0.60 -1.0 402,061 + MPMX19_06218 0.60 -0.0 402,061 + MPMX19_06218 0.60 -1.3 402,061 + MPMX19_06218 0.60 -0.4 402,061 + MPMX19_06218 0.60 -0.5 402,061 + MPMX19_06218 0.60 -0.4 402,061 + MPMX19_06218 0.60 +1.3 402,062 - MPMX19_06218 0.61 +0.0 402,062 - MPMX19_06218 0.61 -1.3 402,062 - MPMX19_06218 0.61 -0.3 402,062 - MPMX19_06218 0.61 -2.0 402,062 - MPMX19_06218 0.61 -1.1 402,062 - MPMX19_06218 0.61 +0.2 402,062 - MPMX19_06218 0.61 +0.3 402,062 - MPMX19_06218 0.61 -0.4 402,062 - MPMX19_06218 0.61 +0.8 402,062 - MPMX19_06218 0.61 -1.1 402,062 - MPMX19_06218 0.61 +0.3 402,062 - MPMX19_06218 0.61 +0.2 402,062 - MPMX19_06218 0.61 -1.8
Or see this region's nucleotide sequence