Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06162

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06160 and MPMX19_06161 are separated by 66 nucleotidesMPMX19_06161 and MPMX19_06162 are separated by 97 nucleotidesMPMX19_06162 and MPMX19_06163 overlap by 4 nucleotides MPMX19_06160: MPMX19_06160 - Succinyl-diaminopimelate desuccinylase, at 345,255 to 346,508 _06160 MPMX19_06161: MPMX19_06161 - hypothetical protein, at 346,575 to 347,102 _06161 MPMX19_06162: MPMX19_06162 - hypothetical protein, at 347,200 to 348,996 _06162 MPMX19_06163: MPMX19_06163 - hypothetical protein, at 348,993 to 351,518 _06163 Position (kb) 347 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 346.320 kb on + strand, within MPMX19_06160at 346.320 kb on + strand, within MPMX19_06160at 346.320 kb on + strand, within MPMX19_06160at 346.321 kb on - strand, within MPMX19_06160at 346.321 kb on - strand, within MPMX19_06160at 346.338 kb on + strand, within MPMX19_06160at 346.339 kb on - strand, within MPMX19_06160at 346.368 kb on + strand, within MPMX19_06160at 346.369 kb on - strand, within MPMX19_06160at 346.369 kb on - strand, within MPMX19_06160at 346.369 kb on - strand, within MPMX19_06160at 346.506 kb on + strandat 346.506 kb on + strandat 346.506 kb on + strandat 346.523 kb on + strandat 346.523 kb on + strandat 346.523 kb on + strandat 346.524 kb on - strandat 346.528 kb on + strandat 346.528 kb on + strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.541 kb on + strandat 346.542 kb on - strandat 346.542 kb on - strandat 346.542 kb on - strandat 346.542 kb on - strandat 346.542 kb on - strandat 346.542 kb on - strandat 346.542 kb on - strandat 346.542 kb on - strandat 346.542 kb on - strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.597 kb on + strandat 346.598 kb on - strandat 346.598 kb on - strandat 346.598 kb on - strandat 346.598 kb on - strandat 346.598 kb on - strandat 346.598 kb on - strandat 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.654 kb on + strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 346.655 kb on - strand, within MPMX19_06161at 347.021 kb on - strand, within MPMX19_06161at 347.056 kb on + strandat 347.056 kb on + strandat 347.057 kb on - strandat 347.057 kb on - strandat 347.057 kb on - strandat 347.168 kb on + strandat 347.168 kb on + strandat 347.168 kb on + strandat 347.168 kb on + strandat 347.168 kb on + strandat 347.169 kb on - strandat 347.169 kb on - strandat 347.169 kb on - strandat 347.169 kb on - strandat 347.202 kb on - strandat 347.239 kb on + strandat 347.239 kb on + strandat 347.239 kb on + strandat 347.239 kb on + strandat 347.239 kb on + strandat 347.239 kb on + strandat 347.239 kb on + strandat 347.239 kb on + strandat 347.239 kb on + strandat 347.239 kb on + strandat 347.239 kb on + strandat 347.240 kb on - strandat 347.240 kb on - strandat 347.240 kb on - strandat 347.240 kb on - strandat 347.240 kb on - strandat 347.240 kb on - strandat 347.384 kb on + strand, within MPMX19_06162at 347.384 kb on + strand, within MPMX19_06162at 347.385 kb on - strand, within MPMX19_06162at 347.385 kb on - strand, within MPMX19_06162at 347.385 kb on - strand, within MPMX19_06162at 347.444 kb on + strand, within MPMX19_06162at 347.444 kb on + strand, within MPMX19_06162at 347.444 kb on + strand, within MPMX19_06162at 347.444 kb on + strand, within MPMX19_06162at 347.444 kb on + strand, within MPMX19_06162at 347.444 kb on + strand, within MPMX19_06162at 347.444 kb on + strand, within MPMX19_06162at 347.444 kb on + strand, within MPMX19_06162at 347.445 kb on - strand, within MPMX19_06162at 347.445 kb on - strand, within MPMX19_06162at 347.445 kb on - strand, within MPMX19_06162at 347.445 kb on - strand, within MPMX19_06162at 347.445 kb on - strand, within MPMX19_06162at 347.445 kb on - strand, within MPMX19_06162at 347.445 kb on - strand, within MPMX19_06162at 347.477 kb on + strand, within MPMX19_06162at 347.477 kb on + strand, within MPMX19_06162at 347.477 kb on + strand, within MPMX19_06162at 347.477 kb on + strand, within MPMX19_06162at 347.477 kb on + strand, within MPMX19_06162at 347.477 kb on + strand, within MPMX19_06162at 347.478 kb on - strand, within MPMX19_06162at 347.478 kb on - strand, within MPMX19_06162at 347.478 kb on - strand, within MPMX19_06162at 347.478 kb on - strand, within MPMX19_06162at 347.478 kb on - strand, within MPMX19_06162at 347.478 kb on - strand, within MPMX19_06162at 347.666 kb on + strand, within MPMX19_06162at 347.666 kb on + strand, within MPMX19_06162at 347.666 kb on + strand, within MPMX19_06162at 347.666 kb on + strand, within MPMX19_06162at 347.666 kb on + strand, within MPMX19_06162at 347.667 kb on - strand, within MPMX19_06162at 347.667 kb on - strand, within MPMX19_06162at 347.667 kb on - strand, within MPMX19_06162at 347.667 kb on - strand, within MPMX19_06162at 347.667 kb on - strand, within MPMX19_06162at 347.667 kb on - strand, within MPMX19_06162at 347.667 kb on - strand, within MPMX19_06162at 347.667 kb on - strand, within MPMX19_06162at 347.903 kb on + strand, within MPMX19_06162at 347.903 kb on + strand, within MPMX19_06162at 347.903 kb on + strand, within MPMX19_06162at 347.903 kb on + strand, within MPMX19_06162at 347.904 kb on - strand, within MPMX19_06162at 347.904 kb on - strand, within MPMX19_06162at 347.904 kb on - strand, within MPMX19_06162at 347.904 kb on - strand, within MPMX19_06162at 347.978 kb on + strand, within MPMX19_06162at 347.978 kb on + strand, within MPMX19_06162at 347.978 kb on + strand, within MPMX19_06162at 347.979 kb on - strand, within MPMX19_06162at 348.819 kb on - strandat 348.819 kb on - strandat 348.902 kb on + strandat 349.010 kb on - strandat 349.088 kb on + strandat 349.342 kb on + strand, within MPMX19_06163at 349.342 kb on + strand, within MPMX19_06163at 349.342 kb on + strand, within MPMX19_06163at 349.343 kb on - strand, within MPMX19_06163at 349.343 kb on - strand, within MPMX19_06163at 349.415 kb on + strand, within MPMX19_06163at 349.415 kb on + strand, within MPMX19_06163at 349.415 kb on + strand, within MPMX19_06163at 349.416 kb on - strand, within MPMX19_06163at 349.416 kb on - strand, within MPMX19_06163at 349.416 kb on - strand, within MPMX19_06163at 349.416 kb on - strand, within MPMX19_06163at 349.429 kb on + strand, within MPMX19_06163at 349.430 kb on - strand, within MPMX19_06163at 349.430 kb on - strand, within MPMX19_06163at 349.435 kb on + strand, within MPMX19_06163at 349.435 kb on + strand, within MPMX19_06163at 349.435 kb on + strand, within MPMX19_06163at 349.435 kb on + strand, within MPMX19_06163at 349.435 kb on + strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.436 kb on - strand, within MPMX19_06163at 349.502 kb on + strand, within MPMX19_06163at 349.502 kb on + strand, within MPMX19_06163at 349.502 kb on + strand, within MPMX19_06163at 349.502 kb on + strand, within MPMX19_06163at 349.503 kb on - strand, within MPMX19_06163at 349.503 kb on - strand, within MPMX19_06163at 349.503 kb on - strand, within MPMX19_06163at 349.676 kb on - strand, within MPMX19_06163at 349.676 kb on - strand, within MPMX19_06163at 349.676 kb on - strand, within MPMX19_06163at 349.876 kb on + strand, within MPMX19_06163at 349.877 kb on - strand, within MPMX19_06163at 349.877 kb on - strand, within MPMX19_06163at 349.903 kb on + strand, within MPMX19_06163at 349.903 kb on + strand, within MPMX19_06163at 349.903 kb on + strand, within MPMX19_06163at 349.903 kb on + strand, within MPMX19_06163at 349.904 kb on - strand, within MPMX19_06163at 349.904 kb on - strand, within MPMX19_06163at 349.904 kb on - strand, within MPMX19_06163at 349.904 kb on - strand, within MPMX19_06163at 349.918 kb on + strand, within MPMX19_06163at 349.918 kb on + strand, within MPMX19_06163at 349.918 kb on + strand, within MPMX19_06163at 349.918 kb on + strand, within MPMX19_06163at 349.919 kb on - strand, within MPMX19_06163

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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346,320 + MPMX19_06160 0.85 -0.7
346,320 + MPMX19_06160 0.85 +0.4
346,320 + MPMX19_06160 0.85 +1.2
346,321 - MPMX19_06160 0.85 +1.1
346,321 - MPMX19_06160 0.85 +0.1
346,338 + MPMX19_06160 0.86 -0.4
346,339 - MPMX19_06160 0.86 -0.6
346,368 + MPMX19_06160 0.89 -0.1
346,369 - MPMX19_06160 0.89 -1.4
346,369 - MPMX19_06160 0.89 +0.2
346,369 - MPMX19_06160 0.89 +0.6
346,506 + -1.3
346,506 + -2.3
346,506 + -1.0
346,523 + -1.5
346,523 + -1.6
346,523 + +1.4
346,524 - +0.4
346,528 + -1.3
346,528 + -0.1
346,541 + -2.9
346,541 + +0.6
346,541 + -0.9
346,541 + -0.7
346,541 + +0.1
346,541 + +0.4
346,541 + -0.6
346,541 + -0.0
346,541 + -0.8
346,541 + +0.8
346,541 + +0.7
346,542 - -0.4
346,542 - -0.1
346,542 - +1.2
346,542 - -1.1
346,542 - +0.4
346,542 - +0.0
346,542 - -1.1
346,542 - +0.4
346,542 - +0.0
346,597 + +0.2
346,597 + -0.8
346,597 + -0.7
346,597 + -0.2
346,597 + -0.8
346,597 + +0.5
346,597 + -2.3
346,597 + -0.8
346,597 + -0.5
346,597 + -0.3
346,597 + -0.5
346,597 + -1.1
346,597 + +0.1
346,597 + -0.1
346,597 + -0.4
346,598 - -0.1
346,598 - +1.9
346,598 - -1.6
346,598 - -1.7
346,598 - -0.7
346,598 - -0.1
346,654 + MPMX19_06161 0.15 -0.1
346,654 + MPMX19_06161 0.15 +0.1
346,654 + MPMX19_06161 0.15 -0.2
346,654 + MPMX19_06161 0.15 -1.1
346,654 + MPMX19_06161 0.15 +1.3
346,654 + MPMX19_06161 0.15 -0.7
346,654 + MPMX19_06161 0.15 +0.1
346,654 + MPMX19_06161 0.15 -1.3
346,654 + MPMX19_06161 0.15 -1.0
346,654 + MPMX19_06161 0.15 -0.0
346,654 + MPMX19_06161 0.15 +0.6
346,654 + MPMX19_06161 0.15 +0.6
346,654 + MPMX19_06161 0.15 -0.9
346,654 + MPMX19_06161 0.15 -1.1
346,655 - MPMX19_06161 0.15 +1.5
346,655 - MPMX19_06161 0.15 +0.9
346,655 - MPMX19_06161 0.15 -3.3
346,655 - MPMX19_06161 0.15 -1.0
346,655 - MPMX19_06161 0.15 -0.9
346,655 - MPMX19_06161 0.15 -1.9
346,655 - MPMX19_06161 0.15 +0.4
346,655 - MPMX19_06161 0.15 -0.3
346,655 - MPMX19_06161 0.15 -2.1
346,655 - MPMX19_06161 0.15 +0.8
346,655 - MPMX19_06161 0.15 -0.5
346,655 - MPMX19_06161 0.15 -0.1
347,021 - MPMX19_06161 0.84 -1.4
347,056 + -1.8
347,056 + -0.8
347,057 - -0.4
347,057 - -0.3
347,057 - +0.5
347,168 + -1.1
347,168 + -1.1
347,168 + -1.5
347,168 + -0.3
347,168 + +0.2
347,169 - -1.9
347,169 - +1.0
347,169 - -0.1
347,169 - -0.4
347,202 - -1.0
347,239 + -0.6
347,239 + -0.3
347,239 + -1.6
347,239 + +0.5
347,239 + -0.0
347,239 + -0.0
347,239 + -0.7
347,239 + +1.8
347,239 + -0.4
347,239 + +0.7
347,239 + -1.1
347,240 - +0.2
347,240 - -0.8
347,240 - +0.4
347,240 - -1.3
347,240 - -0.1
347,240 - -0.4
347,384 + MPMX19_06162 0.10 -0.4
347,384 + MPMX19_06162 0.10 -1.0
347,385 - MPMX19_06162 0.10 +0.1
347,385 - MPMX19_06162 0.10 +0.8
347,385 - MPMX19_06162 0.10 +0.0
347,444 + MPMX19_06162 0.14 -1.3
347,444 + MPMX19_06162 0.14 +0.6
347,444 + MPMX19_06162 0.14 -0.7
347,444 + MPMX19_06162 0.14 +0.2
347,444 + MPMX19_06162 0.14 -0.5
347,444 + MPMX19_06162 0.14 +0.3
347,444 + MPMX19_06162 0.14 -1.0
347,444 + MPMX19_06162 0.14 -0.4
347,445 - MPMX19_06162 0.14 -0.7
347,445 - MPMX19_06162 0.14 -0.1
347,445 - MPMX19_06162 0.14 -0.2
347,445 - MPMX19_06162 0.14 +0.2
347,445 - MPMX19_06162 0.14 -0.1
347,445 - MPMX19_06162 0.14 -0.8
347,445 - MPMX19_06162 0.14 -0.5
347,477 + MPMX19_06162 0.15 +1.5
347,477 + MPMX19_06162 0.15 +0.6
347,477 + MPMX19_06162 0.15 +0.9
347,477 + MPMX19_06162 0.15 -1.9
347,477 + MPMX19_06162 0.15 -1.1
347,477 + MPMX19_06162 0.15 +0.4
347,478 - MPMX19_06162 0.15 -0.9
347,478 - MPMX19_06162 0.15 +0.7
347,478 - MPMX19_06162 0.15 -0.1
347,478 - MPMX19_06162 0.15 +0.7
347,478 - MPMX19_06162 0.15 +0.5
347,478 - MPMX19_06162 0.15 -2.1
347,666 + MPMX19_06162 0.26 +0.8
347,666 + MPMX19_06162 0.26 +0.8
347,666 + MPMX19_06162 0.26 -1.8
347,666 + MPMX19_06162 0.26 -0.1
347,666 + MPMX19_06162 0.26 -0.6
347,667 - MPMX19_06162 0.26 -0.6
347,667 - MPMX19_06162 0.26 -1.6
347,667 - MPMX19_06162 0.26 -1.1
347,667 - MPMX19_06162 0.26 -1.5
347,667 - MPMX19_06162 0.26 +0.2
347,667 - MPMX19_06162 0.26 -0.7
347,667 - MPMX19_06162 0.26 -1.5
347,667 - MPMX19_06162 0.26 -0.6
347,903 + MPMX19_06162 0.39 +0.2
347,903 + MPMX19_06162 0.39 +0.1
347,903 + MPMX19_06162 0.39 -0.6
347,903 + MPMX19_06162 0.39 +0.8
347,904 - MPMX19_06162 0.39 -1.8
347,904 - MPMX19_06162 0.39 -0.8
347,904 - MPMX19_06162 0.39 -0.3
347,904 - MPMX19_06162 0.39 -0.9
347,978 + MPMX19_06162 0.43 +0.3
347,978 + MPMX19_06162 0.43 +0.2
347,978 + MPMX19_06162 0.43 -0.4
347,979 - MPMX19_06162 0.43 +0.2
348,819 - -1.0
348,819 - -0.9
348,902 + -1.6
349,010 - +0.2
349,088 + -0.7
349,342 + MPMX19_06163 0.14 -1.1
349,342 + MPMX19_06163 0.14 -0.9
349,342 + MPMX19_06163 0.14 +1.6
349,343 - MPMX19_06163 0.14 -0.1
349,343 - MPMX19_06163 0.14 -2.0
349,415 + MPMX19_06163 0.17 -1.4
349,415 + MPMX19_06163 0.17 -0.8
349,415 + MPMX19_06163 0.17 -1.5
349,416 - MPMX19_06163 0.17 -1.9
349,416 - MPMX19_06163 0.17 -1.2
349,416 - MPMX19_06163 0.17 -0.2
349,416 - MPMX19_06163 0.17 +0.1
349,429 + MPMX19_06163 0.17 +0.4
349,430 - MPMX19_06163 0.17 -1.9
349,430 - MPMX19_06163 0.17 -0.5
349,435 + MPMX19_06163 0.17 -1.0
349,435 + MPMX19_06163 0.17 -1.0
349,435 + MPMX19_06163 0.17 -0.4
349,435 + MPMX19_06163 0.17 -0.5
349,435 + MPMX19_06163 0.17 -1.6
349,436 - MPMX19_06163 0.18 -0.8
349,436 - MPMX19_06163 0.18 -0.6
349,436 - MPMX19_06163 0.18 -0.6
349,436 - MPMX19_06163 0.18 +0.5
349,436 - MPMX19_06163 0.18 -0.6
349,436 - MPMX19_06163 0.18 +0.4
349,436 - MPMX19_06163 0.18 -0.2
349,436 - MPMX19_06163 0.18 -1.3
349,436 - MPMX19_06163 0.18 +0.9
349,436 - MPMX19_06163 0.18 -1.7
349,436 - MPMX19_06163 0.18 -0.5
349,436 - MPMX19_06163 0.18 +1.2
349,502 + MPMX19_06163 0.20 -0.1
349,502 + MPMX19_06163 0.20 +0.6
349,502 + MPMX19_06163 0.20 +0.6
349,502 + MPMX19_06163 0.20 -0.9
349,503 - MPMX19_06163 0.20 -0.1
349,503 - MPMX19_06163 0.20 -0.3
349,503 - MPMX19_06163 0.20 -0.5
349,676 - MPMX19_06163 0.27 -1.5
349,676 - MPMX19_06163 0.27 -0.1
349,676 - MPMX19_06163 0.27 +0.3
349,876 + MPMX19_06163 0.35 -1.4
349,877 - MPMX19_06163 0.35 -0.3
349,877 - MPMX19_06163 0.35 -0.1
349,903 + MPMX19_06163 0.36 -2.4
349,903 + MPMX19_06163 0.36 +0.7
349,903 + MPMX19_06163 0.36 -0.7
349,903 + MPMX19_06163 0.36 +1.0
349,904 - MPMX19_06163 0.36 -1.0
349,904 - MPMX19_06163 0.36 -0.4
349,904 - MPMX19_06163 0.36 -0.8
349,904 - MPMX19_06163 0.36 -0.3
349,918 + MPMX19_06163 0.37 -2.3
349,918 + MPMX19_06163 0.37 +0.1
349,918 + MPMX19_06163 0.37 -0.1
349,918 + MPMX19_06163 0.37 -1.1
349,919 - MPMX19_06163 0.37 -0.0

Or see this region's nucleotide sequence