Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06106 and MPMX19_06107 are separated by 206 nucleotides MPMX19_06107 and MPMX19_06108 overlap by 4 nucleotides MPMX19_06108 and MPMX19_06109 are separated by 324 nucleotides
MPMX19_06106: MPMX19_06106 - Bacteriohemerythrin, at 290,525 to 290,929
_06106
MPMX19_06107: MPMX19_06107 - hypothetical protein, at 291,136 to 291,888
_06107
MPMX19_06108: MPMX19_06108 - Cocaine esterase, at 291,885 to 293,540
_06108
MPMX19_06109: MPMX19_06109 - Adenine deaminase, at 293,865 to 295,574
_06109
Position (kb) 291
292
293
294 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.922 kb on + strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 290.923 kb on - strand at 291.034 kb on + strand at 291.034 kb on + strand at 291.034 kb on + strand at 291.035 kb on - strand at 291.035 kb on - strand at 291.035 kb on - strand at 291.035 kb on - strand at 291.272 kb on - strand, within MPMX19_06107 at 291.302 kb on + strand, within MPMX19_06107 at 291.302 kb on + strand, within MPMX19_06107 at 291.302 kb on + strand, within MPMX19_06107 at 291.302 kb on + strand, within MPMX19_06107 at 291.302 kb on + strand, within MPMX19_06107 at 291.303 kb on - strand, within MPMX19_06107 at 291.457 kb on + strand, within MPMX19_06107 at 291.457 kb on + strand, within MPMX19_06107 at 291.457 kb on + strand, within MPMX19_06107 at 291.458 kb on - strand, within MPMX19_06107 at 291.487 kb on + strand, within MPMX19_06107 at 291.487 kb on + strand, within MPMX19_06107 at 291.487 kb on + strand, within MPMX19_06107 at 291.487 kb on + strand, within MPMX19_06107 at 291.488 kb on - strand, within MPMX19_06107 at 291.488 kb on - strand, within MPMX19_06107 at 291.488 kb on - strand, within MPMX19_06107 at 291.748 kb on + strand, within MPMX19_06107 at 291.748 kb on + strand, within MPMX19_06107 at 291.749 kb on - strand, within MPMX19_06107 at 291.749 kb on - strand, within MPMX19_06107 at 291.749 kb on - strand, within MPMX19_06107 at 291.886 kb on + strand at 291.886 kb on + strand at 291.886 kb on + strand at 291.886 kb on + strand at 291.887 kb on - strand at 291.887 kb on - strand at 291.887 kb on - strand at 292.019 kb on - strand at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.291 kb on + strand, within MPMX19_06108 at 292.292 kb on - strand, within MPMX19_06108 at 292.292 kb on - strand, within MPMX19_06108 at 292.292 kb on - strand, within MPMX19_06108 at 292.292 kb on - strand, within MPMX19_06108 at 292.756 kb on + strand, within MPMX19_06108 at 292.756 kb on + strand, within MPMX19_06108 at 292.756 kb on + strand, within MPMX19_06108 at 292.757 kb on - strand, within MPMX19_06108 at 292.757 kb on - strand, within MPMX19_06108 at 292.870 kb on + strand, within MPMX19_06108 at 292.870 kb on + strand, within MPMX19_06108 at 292.871 kb on - strand, within MPMX19_06108 at 292.879 kb on + strand, within MPMX19_06108 at 292.880 kb on - strand, within MPMX19_06108 at 292.888 kb on + strand, within MPMX19_06108 at 292.888 kb on + strand, within MPMX19_06108 at 292.888 kb on + strand, within MPMX19_06108 at 292.888 kb on + strand, within MPMX19_06108 at 292.889 kb on - strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.059 kb on + strand, within MPMX19_06108 at 293.060 kb on - strand, within MPMX19_06108 at 293.060 kb on - strand, within MPMX19_06108 at 293.060 kb on - strand, within MPMX19_06108 at 293.060 kb on - strand, within MPMX19_06108 at 293.060 kb on - strand, within MPMX19_06108 at 293.161 kb on + strand, within MPMX19_06108 at 293.162 kb on - strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.173 kb on + strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.174 kb on - strand, within MPMX19_06108 at 293.294 kb on + strand, within MPMX19_06108 at 293.294 kb on + strand, within MPMX19_06108 at 293.294 kb on + strand, within MPMX19_06108 at 293.295 kb on - strand, within MPMX19_06108 at 293.295 kb on - strand, within MPMX19_06108 at 293.295 kb on - strand, within MPMX19_06108 at 293.295 kb on - strand, within MPMX19_06108 at 293.295 kb on - strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.314 kb on + strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.315 kb on - strand, within MPMX19_06108 at 293.329 kb on + strand, within MPMX19_06108 at 293.329 kb on + strand, within MPMX19_06108 at 293.329 kb on + strand, within MPMX19_06108 at 293.330 kb on - strand, within MPMX19_06108 at 293.347 kb on + strand, within MPMX19_06108 at 293.347 kb on + strand, within MPMX19_06108 at 293.348 kb on - strand, within MPMX19_06108 at 293.348 kb on - strand, within MPMX19_06108 at 293.429 kb on - strand at 293.575 kb on + strand at 293.575 kb on + strand at 293.576 kb on - strand at 293.634 kb on + strand at 293.639 kb on + strand at 293.639 kb on + strand at 293.639 kb on + strand at 293.639 kb on + strand at 293.640 kb on - strand at 293.640 kb on - strand at 293.640 kb on - strand at 293.640 kb on - strand at 293.652 kb on + strand at 293.652 kb on + strand at 293.652 kb on + strand at 293.653 kb on - strand at 293.653 kb on - strand at 293.748 kb on + strand at 293.749 kb on - strand at 294.534 kb on - strand, within MPMX19_06109 at 294.534 kb on - strand, within MPMX19_06109 at 294.534 kb on - strand, within MPMX19_06109
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 290,922 + -2.0 290,922 + -0.1 290,922 + -1.7 290,922 + +0.0 290,922 + -1.0 290,922 + -0.4 290,922 + -1.0 290,922 + -0.2 290,922 + -0.6 290,922 + -0.6 290,922 + +0.4 290,922 + -0.5 290,922 + -0.4 290,922 + -0.7 290,922 + -0.1 290,922 + -0.9 290,922 + +0.4 290,922 + +1.1 290,922 + -2.3 290,922 + +0.9 290,922 + -1.9 290,922 + -1.7 290,922 + +0.2 290,922 + +1.0 290,922 + +0.9 290,922 + -0.7 290,922 + +0.2 290,922 + -0.2 290,922 + -0.4 290,922 + -2.1 290,922 + +0.0 290,922 + -0.3 290,922 + -0.1 290,922 + -0.0 290,922 + -0.7 290,922 + -1.0 290,922 + +0.8 290,922 + -0.5 290,922 + -0.5 290,922 + -0.7 290,922 + +0.2 290,923 - -0.7 290,923 - -0.6 290,923 - +1.1 290,923 - +2.8 290,923 - -0.8 290,923 - -0.6 290,923 - +0.4 290,923 - +1.9 290,923 - +0.1 290,923 - -0.4 290,923 - -0.3 290,923 - -0.5 290,923 - -0.1 290,923 - +1.2 290,923 - -1.5 290,923 - +0.6 290,923 - +0.3 290,923 - -0.0 290,923 - -0.5 290,923 - -2.5 290,923 - -1.9 290,923 - +0.8 290,923 - -0.3 290,923 - +1.3 290,923 - +0.8 291,034 + -0.8 291,034 + +0.6 291,034 + -0.5 291,035 - +0.7 291,035 - -1.0 291,035 - -1.7 291,035 - -0.8 291,272 - MPMX19_06107 0.18 +1.0 291,302 + MPMX19_06107 0.22 +0.1 291,302 + MPMX19_06107 0.22 -0.7 291,302 + MPMX19_06107 0.22 +1.0 291,302 + MPMX19_06107 0.22 -1.8 291,302 + MPMX19_06107 0.22 +1.1 291,303 - MPMX19_06107 0.22 +0.9 291,457 + MPMX19_06107 0.43 -2.3 291,457 + MPMX19_06107 0.43 +1.0 291,457 + MPMX19_06107 0.43 -1.1 291,458 - MPMX19_06107 0.43 -1.2 291,487 + MPMX19_06107 0.47 -0.4 291,487 + MPMX19_06107 0.47 -1.9 291,487 + MPMX19_06107 0.47 -2.1 291,487 + MPMX19_06107 0.47 -1.6 291,488 - MPMX19_06107 0.47 +0.1 291,488 - MPMX19_06107 0.47 +1.1 291,488 - MPMX19_06107 0.47 -1.3 291,748 + MPMX19_06107 0.81 -0.8 291,748 + MPMX19_06107 0.81 +0.2 291,749 - MPMX19_06107 0.81 +0.3 291,749 - MPMX19_06107 0.81 -0.1 291,749 - MPMX19_06107 0.81 -1.1 291,886 + -0.9 291,886 + +0.9 291,886 + -0.2 291,886 + -0.2 291,887 - +1.0 291,887 - +0.9 291,887 - -2.3 292,019 - +0.1 292,291 + MPMX19_06108 0.25 +0.6 292,291 + MPMX19_06108 0.25 -0.8 292,291 + MPMX19_06108 0.25 -1.0 292,291 + MPMX19_06108 0.25 -3.6 292,291 + MPMX19_06108 0.25 -0.4 292,291 + MPMX19_06108 0.25 -0.7 292,291 + MPMX19_06108 0.25 -1.3 292,292 - MPMX19_06108 0.25 +0.6 292,292 - MPMX19_06108 0.25 -1.6 292,292 - MPMX19_06108 0.25 -1.9 292,292 - MPMX19_06108 0.25 +0.6 292,756 + MPMX19_06108 0.53 -1.9 292,756 + MPMX19_06108 0.53 +0.2 292,756 + MPMX19_06108 0.53 -1.3 292,757 - MPMX19_06108 0.53 -1.7 292,757 - MPMX19_06108 0.53 +0.5 292,870 + MPMX19_06108 0.59 -1.6 292,870 + MPMX19_06108 0.59 -2.1 292,871 - MPMX19_06108 0.60 -0.8 292,879 + MPMX19_06108 0.60 -0.4 292,880 - MPMX19_06108 0.60 -1.3 292,888 + MPMX19_06108 0.61 -0.6 292,888 + MPMX19_06108 0.61 -1.5 292,888 + MPMX19_06108 0.61 +0.4 292,888 + MPMX19_06108 0.61 -0.9 292,889 - MPMX19_06108 0.61 -1.3 293,059 + MPMX19_06108 0.71 +0.0 293,059 + MPMX19_06108 0.71 +0.6 293,059 + MPMX19_06108 0.71 -0.6 293,059 + MPMX19_06108 0.71 -0.4 293,059 + MPMX19_06108 0.71 -0.6 293,059 + MPMX19_06108 0.71 +2.2 293,059 + MPMX19_06108 0.71 -0.3 293,060 - MPMX19_06108 0.71 +1.0 293,060 - MPMX19_06108 0.71 -1.3 293,060 - MPMX19_06108 0.71 +0.2 293,060 - MPMX19_06108 0.71 +0.0 293,060 - MPMX19_06108 0.71 -0.4 293,161 + MPMX19_06108 0.77 -1.4 293,162 - MPMX19_06108 0.77 +0.0 293,173 + MPMX19_06108 0.78 -0.8 293,173 + MPMX19_06108 0.78 -0.1 293,173 + MPMX19_06108 0.78 -1.6 293,173 + MPMX19_06108 0.78 -1.3 293,173 + MPMX19_06108 0.78 -1.8 293,173 + MPMX19_06108 0.78 -1.1 293,173 + MPMX19_06108 0.78 -0.8 293,173 + MPMX19_06108 0.78 -1.1 293,173 + MPMX19_06108 0.78 -1.3 293,173 + MPMX19_06108 0.78 +0.2 293,173 + MPMX19_06108 0.78 -0.8 293,173 + MPMX19_06108 0.78 -0.6 293,173 + MPMX19_06108 0.78 +0.1 293,173 + MPMX19_06108 0.78 -0.4 293,173 + MPMX19_06108 0.78 -0.7 293,173 + MPMX19_06108 0.78 -0.5 293,173 + MPMX19_06108 0.78 -0.4 293,174 - MPMX19_06108 0.78 +0.6 293,174 - MPMX19_06108 0.78 -1.3 293,174 - MPMX19_06108 0.78 -1.1 293,174 - MPMX19_06108 0.78 -2.0 293,174 - MPMX19_06108 0.78 -1.1 293,174 - MPMX19_06108 0.78 -0.4 293,174 - MPMX19_06108 0.78 -0.8 293,174 - MPMX19_06108 0.78 -0.4 293,174 - MPMX19_06108 0.78 -0.9 293,174 - MPMX19_06108 0.78 -0.8 293,174 - MPMX19_06108 0.78 +0.3 293,174 - MPMX19_06108 0.78 -0.6 293,174 - MPMX19_06108 0.78 -0.4 293,174 - MPMX19_06108 0.78 -0.3 293,174 - MPMX19_06108 0.78 -0.6 293,174 - MPMX19_06108 0.78 +0.7 293,174 - MPMX19_06108 0.78 -0.8 293,174 - MPMX19_06108 0.78 +0.2 293,294 + MPMX19_06108 0.85 -0.9 293,294 + MPMX19_06108 0.85 -0.1 293,294 + MPMX19_06108 0.85 +0.1 293,295 - MPMX19_06108 0.85 -1.4 293,295 - MPMX19_06108 0.85 -0.3 293,295 - MPMX19_06108 0.85 +0.3 293,295 - MPMX19_06108 0.85 +0.2 293,295 - MPMX19_06108 0.85 -1.0 293,314 + MPMX19_06108 0.86 +0.3 293,314 + MPMX19_06108 0.86 -0.4 293,314 + MPMX19_06108 0.86 -1.1 293,314 + MPMX19_06108 0.86 -1.8 293,314 + MPMX19_06108 0.86 -0.5 293,314 + MPMX19_06108 0.86 -0.6 293,314 + MPMX19_06108 0.86 +0.4 293,315 - MPMX19_06108 0.86 +2.2 293,315 - MPMX19_06108 0.86 +0.3 293,315 - MPMX19_06108 0.86 -0.0 293,315 - MPMX19_06108 0.86 +0.3 293,315 - MPMX19_06108 0.86 -0.4 293,315 - MPMX19_06108 0.86 -0.1 293,315 - MPMX19_06108 0.86 -0.5 293,315 - MPMX19_06108 0.86 -0.5 293,315 - MPMX19_06108 0.86 -0.6 293,315 - MPMX19_06108 0.86 -0.1 293,329 + MPMX19_06108 0.87 -2.0 293,329 + MPMX19_06108 0.87 +0.3 293,329 + MPMX19_06108 0.87 -3.2 293,330 - MPMX19_06108 0.87 +0.3 293,347 + MPMX19_06108 0.88 +0.5 293,347 + MPMX19_06108 0.88 -1.0 293,348 - MPMX19_06108 0.88 +0.1 293,348 - MPMX19_06108 0.88 -1.2 293,429 - -1.1 293,575 + -0.8 293,575 + -1.3 293,576 - -1.5 293,634 + +0.3 293,639 + -2.7 293,639 + -0.6 293,639 + -1.7 293,639 + -1.0 293,640 - -0.4 293,640 - -1.0 293,640 - -0.4 293,640 - -0.3 293,652 + -1.2 293,652 + -1.0 293,652 + -0.6 293,653 - +0.2 293,653 - -0.9 293,748 + -1.6 293,749 - +0.2 294,534 - MPMX19_06109 0.39 -0.4 294,534 - MPMX19_06109 0.39 -1.0 294,534 - MPMX19_06109 0.39 +1.0
Or see this region's nucleotide sequence