Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06093

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06092 and MPMX19_06093 are separated by 40 nucleotidesMPMX19_06093 and MPMX19_06094 overlap by 11 nucleotides MPMX19_06092: MPMX19_06092 - hypothetical protein, at 271,836 to 274,697 _06092 MPMX19_06093: MPMX19_06093 - Lactate utilization protein A, at 274,738 to 275,487 _06093 MPMX19_06094: MPMX19_06094 - Lactate utilization protein B, at 275,477 to 276,901 _06094 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1 2at 273.758 kb on + strand, within MPMX19_06092at 273.758 kb on + strand, within MPMX19_06092at 273.758 kb on + strand, within MPMX19_06092at 273.758 kb on + strand, within MPMX19_06092at 273.759 kb on - strand, within MPMX19_06092at 273.759 kb on - strand, within MPMX19_06092at 273.759 kb on - strand, within MPMX19_06092at 273.759 kb on - strand, within MPMX19_06092at 273.759 kb on - strand, within MPMX19_06092at 273.966 kb on + strand, within MPMX19_06092at 273.966 kb on + strand, within MPMX19_06092at 273.966 kb on + strand, within MPMX19_06092at 273.966 kb on + strand, within MPMX19_06092at 273.967 kb on - strand, within MPMX19_06092at 273.967 kb on - strand, within MPMX19_06092at 273.967 kb on - strand, within MPMX19_06092at 274.081 kb on - strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.127 kb on + strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.128 kb on - strand, within MPMX19_06092at 274.560 kb on + strandat 274.560 kb on + strandat 274.561 kb on - strandat 274.561 kb on - strandat 274.629 kb on + strandat 274.629 kb on + strandat 274.629 kb on + strandat 274.629 kb on + strandat 274.629 kb on + strandat 274.630 kb on - strandat 274.630 kb on - strandat 274.630 kb on - strandat 274.630 kb on - strandat 274.718 kb on + strandat 274.718 kb on + strandat 274.718 kb on + strandat 274.718 kb on + strandat 274.719 kb on - strandat 274.719 kb on - strandat 274.719 kb on - strandat 274.768 kb on + strandat 274.768 kb on + strandat 274.768 kb on + strandat 274.768 kb on + strandat 274.769 kb on - strandat 274.769 kb on - strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.771 kb on + strandat 274.772 kb on - strandat 274.772 kb on - strandat 274.772 kb on - strandat 274.772 kb on - strandat 274.772 kb on - strandat 274.772 kb on - strandat 274.897 kb on + strand, within MPMX19_06093at 274.898 kb on - strand, within MPMX19_06093at 274.898 kb on - strand, within MPMX19_06093at 274.898 kb on - strand, within MPMX19_06093at 274.898 kb on - strand, within MPMX19_06093at 274.979 kb on + strand, within MPMX19_06093at 274.979 kb on + strand, within MPMX19_06093at 274.979 kb on + strand, within MPMX19_06093at 274.980 kb on - strand, within MPMX19_06093at 274.980 kb on - strand, within MPMX19_06093at 274.980 kb on - strand, within MPMX19_06093at 275.701 kb on + strand, within MPMX19_06094at 275.702 kb on - strand, within MPMX19_06094at 275.702 kb on - strand, within MPMX19_06094at 275.702 kb on - strand, within MPMX19_06094at 275.891 kb on + strand, within MPMX19_06094at 275.891 kb on + strand, within MPMX19_06094at 275.891 kb on + strand, within MPMX19_06094at 275.891 kb on + strand, within MPMX19_06094at 275.891 kb on + strand, within MPMX19_06094at 275.892 kb on - strand, within MPMX19_06094at 275.892 kb on - strand, within MPMX19_06094at 275.892 kb on - strand, within MPMX19_06094at 275.892 kb on - strand, within MPMX19_06094at 275.892 kb on - strand, within MPMX19_06094at 275.892 kb on - strand, within MPMX19_06094at 275.892 kb on - strand, within MPMX19_06094at 276.020 kb on + strand, within MPMX19_06094at 276.020 kb on + strand, within MPMX19_06094at 276.020 kb on + strand, within MPMX19_06094at 276.021 kb on - strand, within MPMX19_06094at 276.281 kb on + strand, within MPMX19_06094at 276.281 kb on + strand, within MPMX19_06094at 276.281 kb on + strand, within MPMX19_06094at 276.281 kb on + strand, within MPMX19_06094at 276.281 kb on + strand, within MPMX19_06094at 276.281 kb on + strand, within MPMX19_06094at 276.281 kb on + strand, within MPMX19_06094at 276.281 kb on + strand, within MPMX19_06094at 276.282 kb on - strand, within MPMX19_06094at 276.282 kb on - strand, within MPMX19_06094at 276.282 kb on - strand, within MPMX19_06094at 276.282 kb on - strand, within MPMX19_06094at 276.282 kb on - strand, within MPMX19_06094at 276.282 kb on - strand, within MPMX19_06094at 276.282 kb on - strand, within MPMX19_06094at 276.377 kb on + strand, within MPMX19_06094at 276.377 kb on + strand, within MPMX19_06094at 276.377 kb on + strand, within MPMX19_06094at 276.378 kb on - strand, within MPMX19_06094at 276.378 kb on - strand, within MPMX19_06094at 276.378 kb on - strand, within MPMX19_06094at 276.378 kb on - strand, within MPMX19_06094at 276.378 kb on - strand, within MPMX19_06094at 276.449 kb on + strand, within MPMX19_06094at 276.450 kb on - strand, within MPMX19_06094at 276.450 kb on - strand, within MPMX19_06094at 276.450 kb on - strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.473 kb on + strand, within MPMX19_06094at 276.474 kb on - strand, within MPMX19_06094at 276.474 kb on - strand, within MPMX19_06094at 276.474 kb on - strand, within MPMX19_06094at 276.474 kb on - strand, within MPMX19_06094at 276.474 kb on - strand, within MPMX19_06094at 276.474 kb on - strand, within MPMX19_06094at 276.474 kb on - strand, within MPMX19_06094at 276.474 kb on - strand, within MPMX19_06094

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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273,758 + MPMX19_06092 0.67 -0.1
273,758 + MPMX19_06092 0.67 +0.6
273,758 + MPMX19_06092 0.67 +0.9
273,758 + MPMX19_06092 0.67 -1.6
273,759 - MPMX19_06092 0.67 +1.0
273,759 - MPMX19_06092 0.67 +0.6
273,759 - MPMX19_06092 0.67 -0.3
273,759 - MPMX19_06092 0.67 -2.6
273,759 - MPMX19_06092 0.67 -1.5
273,966 + MPMX19_06092 0.74 -0.5
273,966 + MPMX19_06092 0.74 -1.1
273,966 + MPMX19_06092 0.74 -1.5
273,966 + MPMX19_06092 0.74 +0.5
273,967 - MPMX19_06092 0.74 -0.4
273,967 - MPMX19_06092 0.74 -0.4
273,967 - MPMX19_06092 0.74 -1.4
274,081 - MPMX19_06092 0.78 +0.1
274,127 + MPMX19_06092 0.80 -0.8
274,127 + MPMX19_06092 0.80 -0.6
274,127 + MPMX19_06092 0.80 -1.7
274,127 + MPMX19_06092 0.80 -0.5
274,127 + MPMX19_06092 0.80 +0.4
274,127 + MPMX19_06092 0.80 +0.0
274,127 + MPMX19_06092 0.80 -0.6
274,127 + MPMX19_06092 0.80 -0.3
274,127 + MPMX19_06092 0.80 -0.8
274,128 - MPMX19_06092 0.80 -0.6
274,128 - MPMX19_06092 0.80 -1.0
274,128 - MPMX19_06092 0.80 -0.6
274,128 - MPMX19_06092 0.80 -0.8
274,128 - MPMX19_06092 0.80 -0.3
274,128 - MPMX19_06092 0.80 +1.2
274,560 + +0.5
274,560 + -0.6
274,561 - -1.0
274,561 - -0.1
274,629 + -0.7
274,629 + +0.3
274,629 + +0.6
274,629 + -0.7
274,629 + +0.8
274,630 - -0.0
274,630 - -0.1
274,630 - -0.4
274,630 - +0.8
274,718 + -0.4
274,718 + -0.2
274,718 + -1.8
274,718 + -1.1
274,719 - -1.0
274,719 - -2.6
274,719 - -0.5
274,768 + -0.4
274,768 + +0.6
274,768 + -0.4
274,768 + +0.2
274,769 - +0.6
274,769 - -0.2
274,771 + -1.0
274,771 + -0.9
274,771 + -0.6
274,771 + +0.8
274,771 + -0.2
274,771 + -1.0
274,771 + -0.1
274,771 + -1.0
274,772 - -0.4
274,772 - -0.2
274,772 - -0.1
274,772 - -0.1
274,772 - -0.1
274,772 - -0.6
274,897 + MPMX19_06093 0.21 -2.6
274,898 - MPMX19_06093 0.21 +1.1
274,898 - MPMX19_06093 0.21 -0.9
274,898 - MPMX19_06093 0.21 -0.1
274,898 - MPMX19_06093 0.21 -1.1
274,979 + MPMX19_06093 0.32 -1.0
274,979 + MPMX19_06093 0.32 -1.1
274,979 + MPMX19_06093 0.32 +0.7
274,980 - MPMX19_06093 0.32 +0.1
274,980 - MPMX19_06093 0.32 -1.1
274,980 - MPMX19_06093 0.32 -0.6
275,701 + MPMX19_06094 0.16 -0.2
275,702 - MPMX19_06094 0.16 -1.2
275,702 - MPMX19_06094 0.16 -1.5
275,702 - MPMX19_06094 0.16 -1.4
275,891 + MPMX19_06094 0.29 +1.0
275,891 + MPMX19_06094 0.29 -0.4
275,891 + MPMX19_06094 0.29 -1.9
275,891 + MPMX19_06094 0.29 +0.6
275,891 + MPMX19_06094 0.29 +1.0
275,892 - MPMX19_06094 0.29 +0.6
275,892 - MPMX19_06094 0.29 +0.6
275,892 - MPMX19_06094 0.29 +0.8
275,892 - MPMX19_06094 0.29 -0.6
275,892 - MPMX19_06094 0.29 -0.9
275,892 - MPMX19_06094 0.29 +1.9
275,892 - MPMX19_06094 0.29 +0.1
276,020 + MPMX19_06094 0.38 +0.1
276,020 + MPMX19_06094 0.38 -0.8
276,020 + MPMX19_06094 0.38 -0.6
276,021 - MPMX19_06094 0.38 -0.1
276,281 + MPMX19_06094 0.56 -0.5
276,281 + MPMX19_06094 0.56 -0.8
276,281 + MPMX19_06094 0.56 -0.4
276,281 + MPMX19_06094 0.56 -1.1
276,281 + MPMX19_06094 0.56 +1.3
276,281 + MPMX19_06094 0.56 -1.3
276,281 + MPMX19_06094 0.56 -1.4
276,281 + MPMX19_06094 0.56 +0.1
276,282 - MPMX19_06094 0.56 -0.4
276,282 - MPMX19_06094 0.56 +0.3
276,282 - MPMX19_06094 0.56 +1.0
276,282 - MPMX19_06094 0.56 +0.6
276,282 - MPMX19_06094 0.56 -0.2
276,282 - MPMX19_06094 0.56 -0.1
276,282 - MPMX19_06094 0.56 -1.8
276,377 + MPMX19_06094 0.63 -0.5
276,377 + MPMX19_06094 0.63 -0.8
276,377 + MPMX19_06094 0.63 +0.1
276,378 - MPMX19_06094 0.63 +0.1
276,378 - MPMX19_06094 0.63 +0.3
276,378 - MPMX19_06094 0.63 +0.2
276,378 - MPMX19_06094 0.63 +0.6
276,378 - MPMX19_06094 0.63 -0.7
276,449 + MPMX19_06094 0.68 -1.7
276,450 - MPMX19_06094 0.68 +0.5
276,450 - MPMX19_06094 0.68 -0.5
276,450 - MPMX19_06094 0.68 +0.0
276,473 + MPMX19_06094 0.70 -0.1
276,473 + MPMX19_06094 0.70 -0.2
276,473 + MPMX19_06094 0.70 -0.2
276,473 + MPMX19_06094 0.70 -0.9
276,473 + MPMX19_06094 0.70 +0.8
276,473 + MPMX19_06094 0.70 -0.7
276,473 + MPMX19_06094 0.70 -0.4
276,473 + MPMX19_06094 0.70 +0.2
276,473 + MPMX19_06094 0.70 +0.6
276,473 + MPMX19_06094 0.70 +0.3
276,473 + MPMX19_06094 0.70 -0.2
276,473 + MPMX19_06094 0.70 -0.2
276,474 - MPMX19_06094 0.70 -1.4
276,474 - MPMX19_06094 0.70 +0.2
276,474 - MPMX19_06094 0.70 -0.6
276,474 - MPMX19_06094 0.70 +0.4
276,474 - MPMX19_06094 0.70 +0.6
276,474 - MPMX19_06094 0.70 +1.2
276,474 - MPMX19_06094 0.70 +1.8
276,474 - MPMX19_06094 0.70 -0.3

Or see this region's nucleotide sequence