Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06090 and MPMX19_06091 are separated by 478 nucleotides MPMX19_06091 and MPMX19_06092 are separated by 82 nucleotides
MPMX19_06090: MPMX19_06090 - Pyruvate dehydrogenase complex repressor, at 268,828 to 269,598
_06090
MPMX19_06091: MPMX19_06091 - Glycolate permease GlcA, at 270,077 to 271,753
_06091
MPMX19_06092: MPMX19_06092 - hypothetical protein, at 271,836 to 274,697
_06092
Position (kb)
270
271
272 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 269.135 kb on + strand, within MPMX19_06090 at 269.287 kb on + strand, within MPMX19_06090 at 269.287 kb on + strand, within MPMX19_06090 at 269.310 kb on - strand, within MPMX19_06090 at 269.310 kb on - strand, within MPMX19_06090 at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.854 kb on + strand at 269.854 kb on + strand at 269.855 kb on - strand at 269.855 kb on - strand at 269.855 kb on - strand at 269.900 kb on + strand at 269.900 kb on + strand at 269.900 kb on + strand at 269.900 kb on + strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 270.095 kb on + strand at 270.095 kb on + strand at 270.096 kb on - strand at 270.181 kb on + strand at 270.181 kb on + strand at 270.181 kb on + strand at 270.181 kb on + strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.296 kb on + strand, within MPMX19_06091 at 270.296 kb on + strand, within MPMX19_06091 at 270.296 kb on + strand, within MPMX19_06091 at 270.296 kb on + strand, within MPMX19_06091 at 270.297 kb on - strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.345 kb on - strand, within MPMX19_06091 at 270.345 kb on - strand, within MPMX19_06091 at 270.788 kb on + strand, within MPMX19_06091 at 270.788 kb on + strand, within MPMX19_06091 at 270.788 kb on + strand, within MPMX19_06091 at 270.789 kb on - strand, within MPMX19_06091 at 270.789 kb on - strand, within MPMX19_06091 at 270.789 kb on - strand, within MPMX19_06091 at 270.789 kb on - strand, within MPMX19_06091 at 270.803 kb on + strand, within MPMX19_06091 at 270.803 kb on + strand, within MPMX19_06091 at 270.803 kb on + strand, within MPMX19_06091 at 270.803 kb on + strand, within MPMX19_06091 at 270.804 kb on - strand, within MPMX19_06091 at 270.804 kb on - strand, within MPMX19_06091 at 270.804 kb on - strand, within MPMX19_06091 at 270.804 kb on - strand, within MPMX19_06091 at 270.951 kb on + strand, within MPMX19_06091 at 270.951 kb on + strand, within MPMX19_06091 at 270.951 kb on + strand, within MPMX19_06091 at 270.951 kb on + strand, within MPMX19_06091 at 270.951 kb on + strand, within MPMX19_06091 at 270.951 kb on + strand, within MPMX19_06091 at 270.951 kb on + strand, within MPMX19_06091 at 270.951 kb on + strand, within MPMX19_06091 at 270.951 kb on + strand, within MPMX19_06091 at 270.952 kb on - strand, within MPMX19_06091 at 270.952 kb on - strand, within MPMX19_06091 at 270.952 kb on - strand, within MPMX19_06091 at 270.952 kb on - strand, within MPMX19_06091 at 270.952 kb on - strand, within MPMX19_06091 at 270.952 kb on - strand, within MPMX19_06091 at 270.952 kb on - strand, within MPMX19_06091 at 270.952 kb on - strand, within MPMX19_06091 at 270.952 kb on - strand, within MPMX19_06091 at 270.952 kb on - strand, within MPMX19_06091 at 270.980 kb on + strand, within MPMX19_06091 at 270.981 kb on - strand, within MPMX19_06091 at 270.981 kb on - strand, within MPMX19_06091 at 270.981 kb on - strand, within MPMX19_06091 at 271.175 kb on + strand, within MPMX19_06091 at 271.175 kb on + strand, within MPMX19_06091 at 271.175 kb on + strand, within MPMX19_06091 at 271.175 kb on + strand, within MPMX19_06091 at 271.175 kb on + strand, within MPMX19_06091 at 271.176 kb on - strand, within MPMX19_06091 at 271.176 kb on - strand, within MPMX19_06091 at 271.176 kb on - strand, within MPMX19_06091 at 271.176 kb on - strand, within MPMX19_06091 at 271.176 kb on - strand, within MPMX19_06091 at 271.176 kb on - strand, within MPMX19_06091 at 271.250 kb on + strand, within MPMX19_06091 at 271.251 kb on - strand, within MPMX19_06091 at 271.251 kb on - strand, within MPMX19_06091 at 271.277 kb on + strand, within MPMX19_06091 at 271.278 kb on - strand, within MPMX19_06091 at 271.278 kb on - strand, within MPMX19_06091 at 271.292 kb on + strand, within MPMX19_06091 at 271.292 kb on + strand, within MPMX19_06091 at 271.293 kb on - strand, within MPMX19_06091 at 271.293 kb on - strand, within MPMX19_06091 at 271.293 kb on - strand, within MPMX19_06091 at 271.293 kb on - strand, within MPMX19_06091 at 271.343 kb on + strand, within MPMX19_06091 at 271.343 kb on + strand, within MPMX19_06091 at 271.344 kb on - strand, within MPMX19_06091 at 271.344 kb on - strand, within MPMX19_06091 at 271.344 kb on - strand, within MPMX19_06091 at 271.344 kb on - strand, within MPMX19_06091 at 271.409 kb on + strand, within MPMX19_06091 at 271.715 kb on + strand at 271.715 kb on + strand at 271.715 kb on + strand at 271.715 kb on + strand at 271.715 kb on + strand at 271.715 kb on + strand at 271.715 kb on + strand at 271.715 kb on + strand at 271.715 kb on + strand at 271.716 kb on - strand at 271.716 kb on - strand at 271.716 kb on - strand at 271.716 kb on - strand at 271.716 kb on - strand at 271.716 kb on - strand at 271.716 kb on - strand at 271.716 kb on - strand at 271.716 kb on - strand at 271.851 kb on + strand at 271.851 kb on + strand at 271.851 kb on + strand at 271.851 kb on + strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.852 kb on - strand at 271.929 kb on + strand at 271.930 kb on - strand at 271.950 kb on + strand at 271.951 kb on - strand at 272.316 kb on + strand, within MPMX19_06092 at 272.316 kb on + strand, within MPMX19_06092 at 272.317 kb on - strand, within MPMX19_06092 at 272.317 kb on - strand, within MPMX19_06092 at 272.517 kb on + strand, within MPMX19_06092 at 272.541 kb on + strand, within MPMX19_06092 at 272.541 kb on + strand, within MPMX19_06092 at 272.541 kb on + strand, within MPMX19_06092 at 272.542 kb on - strand, within MPMX19_06092 at 272.542 kb on - strand, within MPMX19_06092 at 272.542 kb on - strand, within MPMX19_06092 at 272.542 kb on - strand, within MPMX19_06092
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 269,135 + MPMX19_06090 0.40 +0.2 269,287 + MPMX19_06090 0.60 -2.0 269,287 + MPMX19_06090 0.60 +1.1 269,310 - MPMX19_06090 0.63 -0.1 269,310 - MPMX19_06090 0.63 -0.7 269,642 - -1.8 269,642 - -1.4 269,642 - +2.2 269,642 - -0.3 269,642 - -1.2 269,642 - +0.5 269,854 + -0.8 269,854 + -1.0 269,855 - -0.4 269,855 - -0.5 269,855 - +0.5 269,900 + -1.6 269,900 + +1.1 269,900 + -1.8 269,900 + -1.5 269,901 - -2.5 269,901 - -2.5 269,901 - +0.3 269,901 - -0.1 269,901 - -0.5 269,901 - -0.4 269,901 - -2.0 270,095 + -1.1 270,095 + -0.0 270,096 - +0.7 270,181 + -1.7 270,181 + -0.8 270,181 + -0.8 270,181 + -0.4 270,182 - -2.4 270,182 - +0.7 270,182 - +0.6 270,182 - +0.3 270,182 - -0.3 270,182 - -1.4 270,182 - -1.0 270,182 - -0.6 270,182 - -0.7 270,182 - -0.4 270,296 + MPMX19_06091 0.13 -0.1 270,296 + MPMX19_06091 0.13 -1.5 270,296 + MPMX19_06091 0.13 +0.3 270,296 + MPMX19_06091 0.13 -1.7 270,297 - MPMX19_06091 0.13 +0.0 270,344 + MPMX19_06091 0.16 -0.4 270,344 + MPMX19_06091 0.16 +0.2 270,344 + MPMX19_06091 0.16 -0.4 270,344 + MPMX19_06091 0.16 +0.3 270,344 + MPMX19_06091 0.16 +1.2 270,345 - MPMX19_06091 0.16 +0.1 270,345 - MPMX19_06091 0.16 -0.9 270,788 + MPMX19_06091 0.42 +0.2 270,788 + MPMX19_06091 0.42 +0.1 270,788 + MPMX19_06091 0.42 -0.1 270,789 - MPMX19_06091 0.42 -1.3 270,789 - MPMX19_06091 0.42 -0.4 270,789 - MPMX19_06091 0.42 -0.1 270,789 - MPMX19_06091 0.42 -1.1 270,803 + MPMX19_06091 0.43 -0.6 270,803 + MPMX19_06091 0.43 +0.2 270,803 + MPMX19_06091 0.43 -0.6 270,803 + MPMX19_06091 0.43 +0.0 270,804 - MPMX19_06091 0.43 -1.0 270,804 - MPMX19_06091 0.43 +1.6 270,804 - MPMX19_06091 0.43 +0.6 270,804 - MPMX19_06091 0.43 -1.1 270,951 + MPMX19_06091 0.52 -1.0 270,951 + MPMX19_06091 0.52 +1.0 270,951 + MPMX19_06091 0.52 +0.2 270,951 + MPMX19_06091 0.52 -2.4 270,951 + MPMX19_06091 0.52 +0.0 270,951 + MPMX19_06091 0.52 -1.3 270,951 + MPMX19_06091 0.52 +0.1 270,951 + MPMX19_06091 0.52 -1.2 270,951 + MPMX19_06091 0.52 -1.4 270,952 - MPMX19_06091 0.52 -1.0 270,952 - MPMX19_06091 0.52 -0.0 270,952 - MPMX19_06091 0.52 -1.6 270,952 - MPMX19_06091 0.52 -0.2 270,952 - MPMX19_06091 0.52 -1.8 270,952 - MPMX19_06091 0.52 -0.5 270,952 - MPMX19_06091 0.52 -0.7 270,952 - MPMX19_06091 0.52 -0.2 270,952 - MPMX19_06091 0.52 -0.2 270,952 - MPMX19_06091 0.52 -2.0 270,980 + MPMX19_06091 0.54 +0.2 270,981 - MPMX19_06091 0.54 -0.4 270,981 - MPMX19_06091 0.54 -0.6 270,981 - MPMX19_06091 0.54 -0.6 271,175 + MPMX19_06091 0.65 -0.3 271,175 + MPMX19_06091 0.65 -0.1 271,175 + MPMX19_06091 0.65 -0.7 271,175 + MPMX19_06091 0.65 +0.6 271,175 + MPMX19_06091 0.65 +0.2 271,176 - MPMX19_06091 0.66 +0.7 271,176 - MPMX19_06091 0.66 -1.2 271,176 - MPMX19_06091 0.66 -0.4 271,176 - MPMX19_06091 0.66 -0.6 271,176 - MPMX19_06091 0.66 -0.7 271,176 - MPMX19_06091 0.66 +0.0 271,250 + MPMX19_06091 0.70 +0.8 271,251 - MPMX19_06091 0.70 -1.1 271,251 - MPMX19_06091 0.70 -0.3 271,277 + MPMX19_06091 0.72 +0.0 271,278 - MPMX19_06091 0.72 +0.4 271,278 - MPMX19_06091 0.72 +1.1 271,292 + MPMX19_06091 0.72 -2.6 271,292 + MPMX19_06091 0.72 +0.8 271,293 - MPMX19_06091 0.73 -0.2 271,293 - MPMX19_06091 0.73 -2.3 271,293 - MPMX19_06091 0.73 +1.6 271,293 - MPMX19_06091 0.73 -0.0 271,343 + MPMX19_06091 0.75 -0.3 271,343 + MPMX19_06091 0.75 -0.6 271,344 - MPMX19_06091 0.76 -0.1 271,344 - MPMX19_06091 0.76 -0.4 271,344 - MPMX19_06091 0.76 -0.1 271,344 - MPMX19_06091 0.76 -0.6 271,409 + MPMX19_06091 0.79 -0.1 271,715 + -1.3 271,715 + +0.4 271,715 + -0.1 271,715 + +0.6 271,715 + -1.0 271,715 + +0.5 271,715 + +0.2 271,715 + -0.3 271,715 + -1.6 271,716 - -1.1 271,716 - -0.8 271,716 - +1.9 271,716 - -1.6 271,716 - -1.9 271,716 - +1.7 271,716 - -0.4 271,716 - -0.0 271,716 - -1.3 271,851 + +0.9 271,851 + +1.2 271,851 + -1.2 271,851 + +1.4 271,852 - -1.3 271,852 - -1.3 271,852 - -0.4 271,852 - +0.0 271,929 + +0.8 271,930 - -0.1 271,950 + +1.2 271,951 - -0.6 272,316 + MPMX19_06092 0.17 -0.2 272,316 + MPMX19_06092 0.17 -0.0 272,317 - MPMX19_06092 0.17 +0.4 272,317 - MPMX19_06092 0.17 -1.1 272,517 + MPMX19_06092 0.24 -2.0 272,541 + MPMX19_06092 0.25 +0.4 272,541 + MPMX19_06092 0.25 -1.6 272,541 + MPMX19_06092 0.25 +0.3 272,542 - MPMX19_06092 0.25 -0.8 272,542 - MPMX19_06092 0.25 +0.4 272,542 - MPMX19_06092 0.25 +0.1 272,542 - MPMX19_06092 0.25 -2.4
Or see this region's nucleotide sequence