Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06083 and MPMX19_06084 are separated by 73 nucleotides MPMX19_06084 and MPMX19_06085 are separated by 131 nucleotides MPMX19_06085 and MPMX19_06086 are separated by 46 nucleotides
MPMX19_06083: MPMX19_06083 - Molybdenum storage protein subunit alpha, at 258,781 to 259,614
_06083
MPMX19_06084: MPMX19_06084 - Transcriptional regulatory protein LnrK, at 259,688 to 260,338
_06084
MPMX19_06085: MPMX19_06085 - hypothetical protein, at 260,470 to 261,483
_06085
MPMX19_06086: MPMX19_06086 - Citrate synthase, at 261,530 to 262,861
_06086
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1 at 259.660 kb on + strand at 259.689 kb on + strand at 259.689 kb on + strand at 259.689 kb on + strand at 259.689 kb on + strand at 259.690 kb on - strand at 259.690 kb on - strand at 259.690 kb on - strand at 259.690 kb on - strand at 259.710 kb on - strand at 259.830 kb on + strand, within MPMX19_06084 at 259.830 kb on + strand, within MPMX19_06084 at 259.830 kb on + strand, within MPMX19_06084 at 259.830 kb on + strand, within MPMX19_06084 at 259.830 kb on + strand, within MPMX19_06084 at 259.831 kb on - strand, within MPMX19_06084 at 259.831 kb on - strand, within MPMX19_06084 at 260.046 kb on + strand, within MPMX19_06084 at 260.372 kb on + strand at 260.400 kb on + strand at 260.401 kb on - strand at 261.098 kb on + strand, within MPMX19_06085 at 261.850 kb on - strand, within MPMX19_06086 at 261.850 kb on - strand, within MPMX19_06086 at 261.850 kb on - strand, within MPMX19_06086 at 261.886 kb on - strand, within MPMX19_06086 at 261.886 kb on - strand, within MPMX19_06086 at 261.886 kb on - strand, within MPMX19_06086 at 261.895 kb on - strand, within MPMX19_06086 at 261.895 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.222 kb on - strand, within MPMX19_06086 at 262.240 kb on - strand, within MPMX19_06086 at 262.240 kb on - strand, within MPMX19_06086 at 262.240 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.285 kb on - strand, within MPMX19_06086 at 262.289 kb on - strand, within MPMX19_06086 at 262.289 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086 at 262.384 kb on - strand, within MPMX19_06086
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 259,660 + -0.8 259,689 + +0.2 259,689 + -1.8 259,689 + -1.4 259,689 + -1.8 259,690 - +0.6 259,690 - +1.7 259,690 - -0.6 259,690 - -0.8 259,710 - -0.5 259,830 + MPMX19_06084 0.22 +0.1 259,830 + MPMX19_06084 0.22 +0.6 259,830 + MPMX19_06084 0.22 +0.2 259,830 + MPMX19_06084 0.22 +0.6 259,830 + MPMX19_06084 0.22 -1.1 259,831 - MPMX19_06084 0.22 -0.6 259,831 - MPMX19_06084 0.22 -0.3 260,046 + MPMX19_06084 0.55 +0.0 260,372 + -0.8 260,400 + -0.6 260,401 - +1.2 261,098 + MPMX19_06085 0.62 -0.4 261,850 - MPMX19_06086 0.24 -0.6 261,850 - MPMX19_06086 0.24 -0.3 261,850 - MPMX19_06086 0.24 +0.2 261,886 - MPMX19_06086 0.27 +0.9 261,886 - MPMX19_06086 0.27 -0.3 261,886 - MPMX19_06086 0.27 +0.3 261,895 - MPMX19_06086 0.27 -1.4 261,895 - MPMX19_06086 0.27 +0.4 262,222 - MPMX19_06086 0.52 -0.8 262,222 - MPMX19_06086 0.52 +0.2 262,222 - MPMX19_06086 0.52 +0.2 262,222 - MPMX19_06086 0.52 -0.1 262,222 - MPMX19_06086 0.52 +0.4 262,222 - MPMX19_06086 0.52 -0.4 262,222 - MPMX19_06086 0.52 -0.4 262,222 - MPMX19_06086 0.52 +1.3 262,222 - MPMX19_06086 0.52 -0.7 262,222 - MPMX19_06086 0.52 -0.4 262,222 - MPMX19_06086 0.52 -0.3 262,222 - MPMX19_06086 0.52 -0.4 262,222 - MPMX19_06086 0.52 +0.4 262,240 - MPMX19_06086 0.53 -0.2 262,240 - MPMX19_06086 0.53 -0.7 262,240 - MPMX19_06086 0.53 +0.1 262,285 - MPMX19_06086 0.57 +1.6 262,285 - MPMX19_06086 0.57 -0.6 262,285 - MPMX19_06086 0.57 -1.5 262,285 - MPMX19_06086 0.57 -1.4 262,285 - MPMX19_06086 0.57 +0.9 262,285 - MPMX19_06086 0.57 -1.8 262,289 - MPMX19_06086 0.57 -1.3 262,289 - MPMX19_06086 0.57 -1.4 262,384 - MPMX19_06086 0.64 -0.8 262,384 - MPMX19_06086 0.64 -1.1 262,384 - MPMX19_06086 0.64 -0.7 262,384 - MPMX19_06086 0.64 -0.1 262,384 - MPMX19_06086 0.64 -1.0 262,384 - MPMX19_06086 0.64 -1.8 262,384 - MPMX19_06086 0.64 -0.6 262,384 - MPMX19_06086 0.64 -1.0
Or see this region's nucleotide sequence