Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06065

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06064 and MPMX19_06065 are separated by 32 nucleotidesMPMX19_06065 and MPMX19_06066 are separated by 215 nucleotidesMPMX19_06066 and MPMX19_06067 are separated by 188 nucleotides MPMX19_06064: MPMX19_06064 - Mannonate dehydratase, at 230,347 to 231,543 _06064 MPMX19_06065: MPMX19_06065 - Anaerobic nitric oxide reductase transcription regulator NorR, at 231,576 to 233,060 _06065 MPMX19_06066: MPMX19_06066 - hypothetical protein, at 233,276 to 233,479 _06066 MPMX19_06067: MPMX19_06067 - Adaptive-response sensory-kinase SasA, at 233,668 to 235,497 _06067 Position (kb) 231 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2at 230.608 kb on + strand, within MPMX19_06064at 230.608 kb on + strand, within MPMX19_06064at 230.609 kb on - strand, within MPMX19_06064at 230.609 kb on - strand, within MPMX19_06064at 230.609 kb on - strand, within MPMX19_06064at 230.659 kb on + strand, within MPMX19_06064at 230.659 kb on + strand, within MPMX19_06064at 230.659 kb on + strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.660 kb on - strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.770 kb on + strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.771 kb on - strand, within MPMX19_06064at 230.908 kb on + strand, within MPMX19_06064at 230.908 kb on + strand, within MPMX19_06064at 230.908 kb on + strand, within MPMX19_06064at 230.909 kb on - strand, within MPMX19_06064at 230.909 kb on - strand, within MPMX19_06064at 230.909 kb on - strand, within MPMX19_06064at 230.917 kb on + strand, within MPMX19_06064at 230.918 kb on - strand, within MPMX19_06064at 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.616 kb on + strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.617 kb on - strandat 231.718 kb on + strandat 231.718 kb on + strandat 231.718 kb on + strandat 231.718 kb on + strandat 231.718 kb on + strandat 231.719 kb on - strandat 231.719 kb on - strandat 231.719 kb on - strandat 231.719 kb on - strandat 231.730 kb on + strand, within MPMX19_06065at 231.731 kb on - strand, within MPMX19_06065at 231.731 kb on - strand, within MPMX19_06065at 231.731 kb on - strand, within MPMX19_06065at 232.091 kb on - strand, within MPMX19_06065at 232.091 kb on - strand, within MPMX19_06065at 232.091 kb on - strand, within MPMX19_06065at 232.091 kb on - strand, within MPMX19_06065at 232.091 kb on - strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.093 kb on + strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.094 kb on - strand, within MPMX19_06065at 232.339 kb on + strand, within MPMX19_06065at 232.339 kb on + strand, within MPMX19_06065at 232.339 kb on + strand, within MPMX19_06065at 232.339 kb on + strand, within MPMX19_06065at 232.340 kb on - strand, within MPMX19_06065at 232.340 kb on - strand, within MPMX19_06065at 232.340 kb on - strand, within MPMX19_06065at 232.340 kb on - strand, within MPMX19_06065at 232.340 kb on - strand, within MPMX19_06065at 232.570 kb on + strand, within MPMX19_06065at 232.570 kb on + strand, within MPMX19_06065at 232.570 kb on + strand, within MPMX19_06065at 232.570 kb on + strand, within MPMX19_06065at 232.570 kb on + strand, within MPMX19_06065at 232.570 kb on + strand, within MPMX19_06065at 232.570 kb on + strand, within MPMX19_06065at 232.570 kb on + strand, within MPMX19_06065at 232.570 kb on + strand, within MPMX19_06065at 232.570 kb on + strand, within MPMX19_06065at 232.571 kb on - strand, within MPMX19_06065at 232.571 kb on - strand, within MPMX19_06065at 232.571 kb on - strand, within MPMX19_06065at 232.571 kb on - strand, within MPMX19_06065at 232.571 kb on - strand, within MPMX19_06065at 232.571 kb on - strand, within MPMX19_06065at 232.571 kb on - strand, within MPMX19_06065at 232.571 kb on - strand, within MPMX19_06065at 232.571 kb on - strand, within MPMX19_06065at 232.571 kb on - strand, within MPMX19_06065at 232.571 kb on - strand, within MPMX19_06065at 232.585 kb on + strand, within MPMX19_06065at 232.585 kb on + strand, within MPMX19_06065at 232.585 kb on + strand, within MPMX19_06065at 232.586 kb on - strand, within MPMX19_06065at 232.690 kb on + strand, within MPMX19_06065at 232.690 kb on + strand, within MPMX19_06065at 232.691 kb on - strand, within MPMX19_06065at 232.691 kb on - strand, within MPMX19_06065at 232.691 kb on - strand, within MPMX19_06065at 232.691 kb on - strand, within MPMX19_06065at 232.903 kb on + strand, within MPMX19_06065at 232.903 kb on + strand, within MPMX19_06065at 232.904 kb on - strand, within MPMX19_06065at 232.904 kb on - strand, within MPMX19_06065at 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.094 kb on + strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.095 kb on - strandat 233.477 kb on + strandat 233.477 kb on + strandat 233.477 kb on + strandat 233.477 kb on + strandat 233.477 kb on + strandat 233.477 kb on + strandat 233.477 kb on + strandat 233.477 kb on + strandat 233.477 kb on + strandat 233.477 kb on + strandat 233.478 kb on - strandat 233.478 kb on - strandat 233.478 kb on - strandat 233.478 kb on - strandat 233.478 kb on - strandat 233.494 kb on + strandat 233.920 kb on + strand, within MPMX19_06067at 233.920 kb on + strand, within MPMX19_06067at 233.920 kb on + strand, within MPMX19_06067at 233.921 kb on - strand, within MPMX19_06067at 233.921 kb on - strand, within MPMX19_06067at 233.921 kb on - strand, within MPMX19_06067at 233.921 kb on - strand, within MPMX19_06067at 233.921 kb on - strand, within MPMX19_06067at 233.921 kb on - strand, within MPMX19_06067at 233.921 kb on - strand, within MPMX19_06067at 233.921 kb on - strand, within MPMX19_06067at 234.022 kb on + strand, within MPMX19_06067at 234.022 kb on + strand, within MPMX19_06067at 234.022 kb on + strand, within MPMX19_06067at 234.022 kb on + strand, within MPMX19_06067at 234.022 kb on + strand, within MPMX19_06067at 234.022 kb on + strand, within MPMX19_06067at 234.022 kb on + strand, within MPMX19_06067at 234.023 kb on - strand, within MPMX19_06067at 234.023 kb on - strand, within MPMX19_06067at 234.023 kb on - strand, within MPMX19_06067at 234.023 kb on - strand, within MPMX19_06067

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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230,608 + MPMX19_06064 0.22 +0.3
230,608 + MPMX19_06064 0.22 -1.8
230,609 - MPMX19_06064 0.22 -0.2
230,609 - MPMX19_06064 0.22 +0.2
230,609 - MPMX19_06064 0.22 +1.3
230,659 + MPMX19_06064 0.26 -0.9
230,659 + MPMX19_06064 0.26 -1.0
230,659 + MPMX19_06064 0.26 +0.6
230,660 - MPMX19_06064 0.26 -0.8
230,660 - MPMX19_06064 0.26 -0.9
230,660 - MPMX19_06064 0.26 -0.4
230,660 - MPMX19_06064 0.26 +2.0
230,660 - MPMX19_06064 0.26 -1.3
230,660 - MPMX19_06064 0.26 +0.1
230,770 + MPMX19_06064 0.35 -1.1
230,770 + MPMX19_06064 0.35 +0.6
230,770 + MPMX19_06064 0.35 -1.2
230,770 + MPMX19_06064 0.35 +0.9
230,770 + MPMX19_06064 0.35 -0.1
230,770 + MPMX19_06064 0.35 -1.1
230,770 + MPMX19_06064 0.35 -2.2
230,770 + MPMX19_06064 0.35 -0.9
230,770 + MPMX19_06064 0.35 -0.3
230,771 - MPMX19_06064 0.35 -0.4
230,771 - MPMX19_06064 0.35 -0.6
230,771 - MPMX19_06064 0.35 -1.1
230,771 - MPMX19_06064 0.35 +0.4
230,771 - MPMX19_06064 0.35 -1.3
230,771 - MPMX19_06064 0.35 -0.8
230,771 - MPMX19_06064 0.35 -1.3
230,771 - MPMX19_06064 0.35 -2.1
230,908 + MPMX19_06064 0.47 -1.5
230,908 + MPMX19_06064 0.47 -0.6
230,908 + MPMX19_06064 0.47 -2.1
230,909 - MPMX19_06064 0.47 +0.6
230,909 - MPMX19_06064 0.47 +0.3
230,909 - MPMX19_06064 0.47 +0.3
230,917 + MPMX19_06064 0.48 -1.1
230,918 - MPMX19_06064 0.48 +0.4
231,616 + -2.1
231,616 + +1.1
231,616 + +0.0
231,616 + -1.6
231,616 + -0.6
231,616 + -0.3
231,616 + -1.0
231,616 + -0.2
231,616 + -1.5
231,616 + -0.2
231,616 + -1.2
231,616 + +0.5
231,616 + -0.7
231,617 - -1.4
231,617 - -0.2
231,617 - +1.2
231,617 - +0.3
231,617 - +0.0
231,617 - +0.2
231,617 - -1.4
231,718 + -0.3
231,718 + -0.3
231,718 + -0.3
231,718 + -0.9
231,718 + -0.2
231,719 - +1.2
231,719 - -1.0
231,719 - +0.2
231,719 - +1.5
231,730 + MPMX19_06065 0.10 +0.1
231,731 - MPMX19_06065 0.10 -0.5
231,731 - MPMX19_06065 0.10 -0.4
231,731 - MPMX19_06065 0.10 +1.4
232,091 - MPMX19_06065 0.35 -0.3
232,091 - MPMX19_06065 0.35 -0.4
232,091 - MPMX19_06065 0.35 -1.0
232,091 - MPMX19_06065 0.35 -1.2
232,091 - MPMX19_06065 0.35 -0.9
232,093 + MPMX19_06065 0.35 -2.1
232,093 + MPMX19_06065 0.35 +2.2
232,093 + MPMX19_06065 0.35 -1.1
232,093 + MPMX19_06065 0.35 -1.3
232,093 + MPMX19_06065 0.35 -1.4
232,093 + MPMX19_06065 0.35 +0.1
232,093 + MPMX19_06065 0.35 -0.4
232,093 + MPMX19_06065 0.35 +0.4
232,093 + MPMX19_06065 0.35 -0.1
232,093 + MPMX19_06065 0.35 -2.6
232,093 + MPMX19_06065 0.35 -1.0
232,093 + MPMX19_06065 0.35 +0.8
232,093 + MPMX19_06065 0.35 -0.3
232,093 + MPMX19_06065 0.35 -2.3
232,093 + MPMX19_06065 0.35 -1.4
232,094 - MPMX19_06065 0.35 -1.4
232,094 - MPMX19_06065 0.35 -1.6
232,094 - MPMX19_06065 0.35 -0.8
232,094 - MPMX19_06065 0.35 -0.2
232,094 - MPMX19_06065 0.35 -1.4
232,094 - MPMX19_06065 0.35 -1.2
232,094 - MPMX19_06065 0.35 -1.5
232,339 + MPMX19_06065 0.51 -0.7
232,339 + MPMX19_06065 0.51 -1.2
232,339 + MPMX19_06065 0.51 -1.0
232,339 + MPMX19_06065 0.51 -0.3
232,340 - MPMX19_06065 0.51 -2.3
232,340 - MPMX19_06065 0.51 -1.9
232,340 - MPMX19_06065 0.51 -1.5
232,340 - MPMX19_06065 0.51 -0.0
232,340 - MPMX19_06065 0.51 -0.3
232,570 + MPMX19_06065 0.67 -0.6
232,570 + MPMX19_06065 0.67 -1.9
232,570 + MPMX19_06065 0.67 -1.2
232,570 + MPMX19_06065 0.67 -1.1
232,570 + MPMX19_06065 0.67 -1.5
232,570 + MPMX19_06065 0.67 +0.0
232,570 + MPMX19_06065 0.67 +0.0
232,570 + MPMX19_06065 0.67 -0.3
232,570 + MPMX19_06065 0.67 +0.3
232,570 + MPMX19_06065 0.67 -0.5
232,571 - MPMX19_06065 0.67 -0.8
232,571 - MPMX19_06065 0.67 -0.1
232,571 - MPMX19_06065 0.67 -2.2
232,571 - MPMX19_06065 0.67 -1.0
232,571 - MPMX19_06065 0.67 -2.0
232,571 - MPMX19_06065 0.67 -1.1
232,571 - MPMX19_06065 0.67 -0.9
232,571 - MPMX19_06065 0.67 +0.0
232,571 - MPMX19_06065 0.67 -0.1
232,571 - MPMX19_06065 0.67 -1.2
232,571 - MPMX19_06065 0.67 -0.0
232,585 + MPMX19_06065 0.68 +0.3
232,585 + MPMX19_06065 0.68 +0.1
232,585 + MPMX19_06065 0.68 -1.3
232,586 - MPMX19_06065 0.68 +1.2
232,690 + MPMX19_06065 0.75 +1.0
232,690 + MPMX19_06065 0.75 -1.4
232,691 - MPMX19_06065 0.75 +0.2
232,691 - MPMX19_06065 0.75 -1.4
232,691 - MPMX19_06065 0.75 -1.7
232,691 - MPMX19_06065 0.75 -0.4
232,903 + MPMX19_06065 0.89 +0.2
232,903 + MPMX19_06065 0.89 +1.2
232,904 - MPMX19_06065 0.89 +0.3
232,904 - MPMX19_06065 0.89 -1.0
233,094 + -0.6
233,094 + -0.7
233,094 + -0.3
233,094 + -1.0
233,094 + -0.9
233,094 + -2.0
233,094 + -1.0
233,094 + +0.6
233,094 + -0.3
233,094 + -0.5
233,094 + -1.3
233,094 + +0.4
233,094 + -0.3
233,094 + -0.1
233,094 + -0.9
233,094 + +0.4
233,094 + +0.2
233,094 + +1.1
233,094 + -1.8
233,094 + +0.4
233,094 + -0.6
233,095 - -0.4
233,095 - -0.2
233,095 - +0.8
233,095 - -0.6
233,095 - +0.1
233,095 - +1.0
233,095 - +0.5
233,095 - -0.3
233,095 - -1.4
233,095 - -0.4
233,095 - +0.2
233,095 - -0.8
233,095 - +0.2
233,095 - -0.1
233,477 + -0.6
233,477 + +0.3
233,477 + -0.3
233,477 + -0.4
233,477 + +0.0
233,477 + -0.7
233,477 + +0.6
233,477 + -0.7
233,477 + -0.4
233,477 + -1.5
233,478 - -1.3
233,478 - -0.7
233,478 - -0.8
233,478 - -0.3
233,478 - -1.4
233,494 + -0.5
233,920 + MPMX19_06067 0.14 -2.3
233,920 + MPMX19_06067 0.14 +0.7
233,920 + MPMX19_06067 0.14 -2.1
233,921 - MPMX19_06067 0.14 +0.2
233,921 - MPMX19_06067 0.14 -0.3
233,921 - MPMX19_06067 0.14 -2.1
233,921 - MPMX19_06067 0.14 -2.0
233,921 - MPMX19_06067 0.14 -1.4
233,921 - MPMX19_06067 0.14 -0.1
233,921 - MPMX19_06067 0.14 -1.2
233,921 - MPMX19_06067 0.14 -1.9
234,022 + MPMX19_06067 0.19 -0.9
234,022 + MPMX19_06067 0.19 +0.2
234,022 + MPMX19_06067 0.19 -0.0
234,022 + MPMX19_06067 0.19 -0.4
234,022 + MPMX19_06067 0.19 -1.0
234,022 + MPMX19_06067 0.19 -0.3
234,022 + MPMX19_06067 0.19 -0.1
234,023 - MPMX19_06067 0.19 +0.3
234,023 - MPMX19_06067 0.19 -0.6
234,023 - MPMX19_06067 0.19 -1.3
234,023 - MPMX19_06067 0.19 -1.9

Or see this region's nucleotide sequence