Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06007 and MPMX19_06008 are separated by 100 nucleotides MPMX19_06008 and MPMX19_06009 are separated by 228 nucleotides MPMX19_06009 and MPMX19_06010 are separated by 6 nucleotides
MPMX19_06007: MPMX19_06007 - Leu/Ile/Val-binding protein, at 161,137 to 162,237
_06007
MPMX19_06008: MPMX19_06008 - hypothetical protein, at 162,338 to 162,619
_06008
MPMX19_06009: MPMX19_06009 - hypothetical protein, at 162,848 to 163,054
_06009
MPMX19_06010: MPMX19_06010 - hypothetical protein, at 163,061 to 164,152
_06010
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 161.899 kb on + strand, within MPMX19_06007 at 161.899 kb on + strand, within MPMX19_06007 at 161.899 kb on + strand, within MPMX19_06007 at 161.900 kb on - strand, within MPMX19_06007 at 161.900 kb on - strand, within MPMX19_06007 at 161.900 kb on - strand, within MPMX19_06007 at 162.025 kb on + strand, within MPMX19_06007 at 162.025 kb on + strand, within MPMX19_06007 at 162.025 kb on + strand, within MPMX19_06007 at 162.025 kb on + strand, within MPMX19_06007 at 162.025 kb on + strand, within MPMX19_06007 at 162.025 kb on + strand, within MPMX19_06007 at 162.025 kb on + strand, within MPMX19_06007 at 162.026 kb on - strand, within MPMX19_06007 at 162.026 kb on - strand, within MPMX19_06007 at 162.034 kb on + strand, within MPMX19_06007 at 162.034 kb on + strand, within MPMX19_06007 at 162.034 kb on + strand, within MPMX19_06007 at 162.034 kb on + strand, within MPMX19_06007 at 162.034 kb on + strand, within MPMX19_06007 at 162.034 kb on + strand, within MPMX19_06007 at 162.034 kb on + strand, within MPMX19_06007 at 162.034 kb on + strand, within MPMX19_06007 at 162.034 kb on + strand, within MPMX19_06007 at 162.034 kb on + strand, within MPMX19_06007 at 162.034 kb on + strand, within MPMX19_06007 at 162.035 kb on - strand, within MPMX19_06007 at 162.035 kb on - strand, within MPMX19_06007 at 162.035 kb on - strand, within MPMX19_06007 at 162.035 kb on - strand, within MPMX19_06007 at 162.035 kb on - strand, within MPMX19_06007 at 162.035 kb on - strand, within MPMX19_06007 at 162.035 kb on - strand, within MPMX19_06007 at 162.035 kb on - strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.040 kb on + strand, within MPMX19_06007 at 162.041 kb on - strand, within MPMX19_06007 at 162.041 kb on - strand, within MPMX19_06007 at 162.041 kb on - strand, within MPMX19_06007 at 162.041 kb on - strand, within MPMX19_06007 at 162.041 kb on - strand, within MPMX19_06007 at 162.041 kb on - strand, within MPMX19_06007 at 162.041 kb on - strand, within MPMX19_06007 at 162.041 kb on - strand, within MPMX19_06007 at 162.130 kb on + strand at 162.130 kb on + strand at 162.130 kb on + strand at 162.130 kb on + strand at 162.130 kb on + strand at 162.131 kb on - strand at 162.131 kb on - strand at 162.131 kb on - strand at 162.131 kb on - strand at 162.131 kb on - strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.190 kb on + strand at 162.191 kb on - strand at 162.191 kb on - strand at 162.191 kb on - strand at 162.191 kb on - strand at 162.191 kb on - strand at 162.191 kb on - strand at 162.191 kb on - strand at 162.191 kb on - strand at 162.191 kb on - strand at 162.191 kb on - strand at 162.199 kb on + strand at 162.199 kb on + strand at 162.199 kb on + strand at 162.199 kb on + strand at 162.199 kb on + strand at 162.199 kb on + strand at 162.200 kb on - strand at 162.200 kb on - strand at 162.200 kb on - strand at 162.220 kb on + strand at 162.221 kb on - strand at 162.235 kb on + strand at 162.235 kb on + strand at 162.235 kb on + strand at 162.235 kb on + strand at 162.236 kb on - strand at 162.236 kb on - strand at 162.305 kb on + strand at 162.305 kb on + strand at 162.306 kb on - strand at 162.323 kb on + strand at 162.323 kb on + strand at 162.324 kb on - strand at 162.324 kb on - strand at 162.346 kb on + strand at 162.346 kb on + strand at 162.346 kb on + strand at 162.346 kb on + strand at 162.346 kb on + strand at 162.347 kb on - strand at 162.347 kb on - strand at 162.347 kb on - strand at 162.347 kb on - strand at 162.347 kb on - strand at 162.347 kb on - strand at 162.347 kb on - strand at 162.360 kb on + strand at 162.360 kb on + strand at 162.360 kb on + strand at 162.360 kb on + strand at 162.360 kb on + strand at 162.360 kb on + strand at 162.360 kb on + strand at 162.360 kb on + strand at 162.361 kb on - strand at 162.361 kb on - strand at 162.361 kb on - strand at 162.361 kb on - strand at 162.361 kb on - strand at 162.361 kb on - strand at 162.361 kb on - strand at 162.361 kb on - strand at 162.361 kb on - strand at 162.361 kb on - strand at 162.361 kb on - strand at 162.361 kb on - strand at 162.626 kb on + strand at 162.627 kb on - strand at 162.627 kb on - strand at 162.648 kb on + strand at 162.648 kb on + strand at 162.648 kb on + strand at 162.649 kb on - strand at 162.884 kb on + strand, within MPMX19_06009 at 162.884 kb on + strand, within MPMX19_06009 at 162.885 kb on - strand, within MPMX19_06009 at 162.885 kb on - strand, within MPMX19_06009 at 162.885 kb on - strand, within MPMX19_06009 at 162.885 kb on - strand, within MPMX19_06009 at 162.885 kb on - strand, within MPMX19_06009 at 162.911 kb on + strand, within MPMX19_06009 at 162.911 kb on + strand, within MPMX19_06009 at 162.911 kb on + strand, within MPMX19_06009 at 163.092 kb on + strand at 163.093 kb on - strand at 163.426 kb on - strand, within MPMX19_06010 at 163.567 kb on + strand, within MPMX19_06010 at 163.568 kb on - strand, within MPMX19_06010 at 163.568 kb on - strand, within MPMX19_06010 at 163.674 kb on + strand, within MPMX19_06010 at 163.674 kb on + strand, within MPMX19_06010 at 163.674 kb on + strand, within MPMX19_06010 at 163.674 kb on + strand, within MPMX19_06010 at 163.674 kb on + strand, within MPMX19_06010 at 163.674 kb on + strand, within MPMX19_06010 at 163.674 kb on + strand, within MPMX19_06010 at 163.675 kb on - strand, within MPMX19_06010 at 163.675 kb on - strand, within MPMX19_06010 at 163.675 kb on - strand, within MPMX19_06010 at 163.675 kb on - strand, within MPMX19_06010 at 163.708 kb on + strand, within MPMX19_06010 at 163.708 kb on + strand, within MPMX19_06010 at 163.708 kb on + strand, within MPMX19_06010 at 163.708 kb on + strand, within MPMX19_06010 at 163.708 kb on + strand, within MPMX19_06010 at 163.708 kb on + strand, within MPMX19_06010 at 163.709 kb on - strand, within MPMX19_06010 at 163.709 kb on - strand, within MPMX19_06010 at 163.709 kb on - strand, within MPMX19_06010 at 163.709 kb on - strand, within MPMX19_06010 at 163.709 kb on - strand, within MPMX19_06010 at 163.734 kb on + strand, within MPMX19_06010 at 163.734 kb on + strand, within MPMX19_06010 at 163.734 kb on + strand, within MPMX19_06010 at 163.734 kb on + strand, within MPMX19_06010 at 163.734 kb on + strand, within MPMX19_06010 at 163.735 kb on - strand, within MPMX19_06010 at 163.735 kb on - strand, within MPMX19_06010 at 163.735 kb on - strand, within MPMX19_06010 at 163.735 kb on - strand, within MPMX19_06010 at 163.865 kb on - strand, within MPMX19_06010
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 161,899 + MPMX19_06007 0.69 -1.6 161,899 + MPMX19_06007 0.69 -0.9 161,899 + MPMX19_06007 0.69 -0.1 161,900 - MPMX19_06007 0.69 -0.2 161,900 - MPMX19_06007 0.69 +0.6 161,900 - MPMX19_06007 0.69 +0.2 162,025 + MPMX19_06007 0.81 -0.1 162,025 + MPMX19_06007 0.81 +0.7 162,025 + MPMX19_06007 0.81 -0.8 162,025 + MPMX19_06007 0.81 -1.5 162,025 + MPMX19_06007 0.81 -0.2 162,025 + MPMX19_06007 0.81 -0.4 162,025 + MPMX19_06007 0.81 -0.8 162,026 - MPMX19_06007 0.81 +0.8 162,026 - MPMX19_06007 0.81 -0.6 162,034 + MPMX19_06007 0.81 -1.9 162,034 + MPMX19_06007 0.81 -1.9 162,034 + MPMX19_06007 0.81 -1.3 162,034 + MPMX19_06007 0.81 +0.0 162,034 + MPMX19_06007 0.81 -0.0 162,034 + MPMX19_06007 0.81 +0.5 162,034 + MPMX19_06007 0.81 -0.8 162,034 + MPMX19_06007 0.81 +0.3 162,034 + MPMX19_06007 0.81 -1.7 162,034 + MPMX19_06007 0.81 -1.0 162,034 + MPMX19_06007 0.81 -0.7 162,035 - MPMX19_06007 0.82 -0.4 162,035 - MPMX19_06007 0.82 +0.1 162,035 - MPMX19_06007 0.82 -0.7 162,035 - MPMX19_06007 0.82 -0.6 162,035 - MPMX19_06007 0.82 +0.5 162,035 - MPMX19_06007 0.82 -0.5 162,035 - MPMX19_06007 0.82 -0.7 162,035 - MPMX19_06007 0.82 -0.5 162,040 + MPMX19_06007 0.82 -0.8 162,040 + MPMX19_06007 0.82 +0.4 162,040 + MPMX19_06007 0.82 -2.7 162,040 + MPMX19_06007 0.82 +0.4 162,040 + MPMX19_06007 0.82 -1.3 162,040 + MPMX19_06007 0.82 -0.5 162,040 + MPMX19_06007 0.82 +0.5 162,040 + MPMX19_06007 0.82 +0.8 162,040 + MPMX19_06007 0.82 +0.6 162,040 + MPMX19_06007 0.82 -0.6 162,040 + MPMX19_06007 0.82 -2.3 162,040 + MPMX19_06007 0.82 -0.4 162,040 + MPMX19_06007 0.82 +0.6 162,041 - MPMX19_06007 0.82 -1.3 162,041 - MPMX19_06007 0.82 -0.2 162,041 - MPMX19_06007 0.82 -0.9 162,041 - MPMX19_06007 0.82 +0.2 162,041 - MPMX19_06007 0.82 +0.6 162,041 - MPMX19_06007 0.82 -1.3 162,041 - MPMX19_06007 0.82 +0.6 162,041 - MPMX19_06007 0.82 -0.3 162,130 + -2.7 162,130 + -1.1 162,130 + +0.3 162,130 + +0.2 162,130 + -1.6 162,131 - -0.4 162,131 - +0.3 162,131 - -0.1 162,131 - -0.6 162,131 - -1.1 162,190 + +0.4 162,190 + -1.0 162,190 + -0.4 162,190 + -0.4 162,190 + -0.8 162,190 + -1.5 162,190 + -1.7 162,190 + -1.1 162,190 + -0.2 162,190 + -0.3 162,191 - -0.1 162,191 - +0.9 162,191 - -1.6 162,191 - -0.6 162,191 - +0.9 162,191 - -0.8 162,191 - -1.1 162,191 - -0.1 162,191 - -0.1 162,191 - -0.9 162,199 + -0.8 162,199 + +0.0 162,199 + -0.1 162,199 + -0.7 162,199 + -0.1 162,199 + +0.2 162,200 - +0.6 162,200 - +0.9 162,200 - -1.6 162,220 + +1.5 162,221 - -0.8 162,235 + -1.2 162,235 + -1.0 162,235 + -0.8 162,235 + +0.9 162,236 - +0.5 162,236 - -0.9 162,305 + -1.0 162,305 + +0.2 162,306 - +0.3 162,323 + -0.1 162,323 + -1.4 162,324 - +0.5 162,324 - +0.2 162,346 + -0.1 162,346 + +0.2 162,346 + -0.1 162,346 + -2.0 162,346 + +0.4 162,347 - +0.5 162,347 - -0.2 162,347 - +0.2 162,347 - +0.0 162,347 - +0.7 162,347 - -0.5 162,347 - -0.6 162,360 + -0.1 162,360 + -0.1 162,360 + +0.3 162,360 + -1.4 162,360 + -0.6 162,360 + -0.1 162,360 + -0.7 162,360 + -1.5 162,361 - -1.5 162,361 - -0.5 162,361 - +0.4 162,361 - -0.3 162,361 - -0.6 162,361 - +0.3 162,361 - -1.1 162,361 - -0.8 162,361 - -0.3 162,361 - -0.0 162,361 - +0.1 162,361 - -1.1 162,626 + -1.0 162,627 - -0.0 162,627 - +0.6 162,648 + +0.2 162,648 + -1.5 162,648 + +2.2 162,649 - -1.7 162,884 + MPMX19_06009 0.17 +0.6 162,884 + MPMX19_06009 0.17 -0.1 162,885 - MPMX19_06009 0.18 -0.2 162,885 - MPMX19_06009 0.18 -1.3 162,885 - MPMX19_06009 0.18 +0.9 162,885 - MPMX19_06009 0.18 +0.2 162,885 - MPMX19_06009 0.18 -0.4 162,911 + MPMX19_06009 0.30 -0.3 162,911 + MPMX19_06009 0.30 +1.5 162,911 + MPMX19_06009 0.30 -0.8 163,092 + -0.4 163,093 - -0.6 163,426 - MPMX19_06010 0.33 +0.8 163,567 + MPMX19_06010 0.46 -0.8 163,568 - MPMX19_06010 0.46 -0.8 163,568 - MPMX19_06010 0.46 -0.8 163,674 + MPMX19_06010 0.56 -0.2 163,674 + MPMX19_06010 0.56 +2.0 163,674 + MPMX19_06010 0.56 -0.9 163,674 + MPMX19_06010 0.56 -1.8 163,674 + MPMX19_06010 0.56 -1.3 163,674 + MPMX19_06010 0.56 +1.0 163,674 + MPMX19_06010 0.56 +0.2 163,675 - MPMX19_06010 0.56 -0.4 163,675 - MPMX19_06010 0.56 +0.9 163,675 - MPMX19_06010 0.56 -0.8 163,675 - MPMX19_06010 0.56 -0.2 163,708 + MPMX19_06010 0.59 +0.3 163,708 + MPMX19_06010 0.59 -1.2 163,708 + MPMX19_06010 0.59 -1.0 163,708 + MPMX19_06010 0.59 +0.2 163,708 + MPMX19_06010 0.59 -0.8 163,708 + MPMX19_06010 0.59 -0.8 163,709 - MPMX19_06010 0.59 -0.1 163,709 - MPMX19_06010 0.59 -1.4 163,709 - MPMX19_06010 0.59 -0.0 163,709 - MPMX19_06010 0.59 -0.3 163,709 - MPMX19_06010 0.59 -2.1 163,734 + MPMX19_06010 0.62 -0.1 163,734 + MPMX19_06010 0.62 +0.6 163,734 + MPMX19_06010 0.62 -1.6 163,734 + MPMX19_06010 0.62 +0.5 163,734 + MPMX19_06010 0.62 +0.4 163,735 - MPMX19_06010 0.62 +0.4 163,735 - MPMX19_06010 0.62 +1.2 163,735 - MPMX19_06010 0.62 -1.0 163,735 - MPMX19_06010 0.62 -0.4 163,865 - MPMX19_06010 0.74 +0.4
Or see this region's nucleotide sequence