Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05940

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05939 and MPMX19_05940 are separated by 97 nucleotidesMPMX19_05940 and MPMX19_05941 are separated by 124 nucleotides MPMX19_05939: MPMX19_05939 - Vitamin B12 transport ATP-binding protein BacA, at 82,565 to 84,418 _05939 MPMX19_05940: MPMX19_05940 - Anaerobic regulatory protein, at 84,516 to 85,229 _05940 MPMX19_05941: MPMX19_05941 - hypothetical protein, at 85,354 to 86,442 _05941 Position (kb) 84 85 86Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 83.534 kb on + strand, within MPMX19_05939at 83.534 kb on + strand, within MPMX19_05939at 83.534 kb on + strand, within MPMX19_05939at 83.534 kb on + strand, within MPMX19_05939at 83.534 kb on + strand, within MPMX19_05939at 83.535 kb on - strand, within MPMX19_05939at 83.535 kb on - strand, within MPMX19_05939at 83.535 kb on - strand, within MPMX19_05939at 83.981 kb on + strand, within MPMX19_05939at 83.981 kb on + strand, within MPMX19_05939at 83.981 kb on + strand, within MPMX19_05939at 83.981 kb on + strand, within MPMX19_05939at 83.982 kb on - strand, within MPMX19_05939at 83.982 kb on - strand, within MPMX19_05939at 83.982 kb on - strand, within MPMX19_05939at 83.982 kb on - strand, within MPMX19_05939at 84.017 kb on + strand, within MPMX19_05939at 84.017 kb on + strand, within MPMX19_05939at 84.017 kb on + strand, within MPMX19_05939at 84.018 kb on - strand, within MPMX19_05939at 84.106 kb on + strand, within MPMX19_05939at 84.107 kb on - strand, within MPMX19_05939at 84.107 kb on - strand, within MPMX19_05939at 84.349 kb on + strandat 84.349 kb on + strandat 84.349 kb on + strandat 84.349 kb on + strandat 84.349 kb on + strandat 84.349 kb on + strandat 84.349 kb on + strandat 84.349 kb on + strandat 84.350 kb on - strandat 84.350 kb on - strandat 84.350 kb on - strandat 84.350 kb on - strandat 84.350 kb on - strandat 84.350 kb on - strandat 84.350 kb on - strandat 84.350 kb on - strandat 84.350 kb on - strandat 84.350 kb on - strandat 84.350 kb on - strandat 84.512 kb on + strandat 84.512 kb on + strandat 84.512 kb on + strandat 84.512 kb on + strandat 84.512 kb on + strandat 84.513 kb on - strandat 84.513 kb on - strandat 84.513 kb on - strandat 84.513 kb on - strandat 84.513 kb on - strandat 84.513 kb on - strandat 84.513 kb on - strandat 84.513 kb on - strandat 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.687 kb on + strand, within MPMX19_05940at 84.688 kb on - strand, within MPMX19_05940at 84.688 kb on - strand, within MPMX19_05940at 84.688 kb on - strand, within MPMX19_05940at 84.688 kb on - strand, within MPMX19_05940at 84.688 kb on - strand, within MPMX19_05940at 84.688 kb on - strand, within MPMX19_05940at 84.688 kb on - strand, within MPMX19_05940at 84.688 kb on - strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.717 kb on + strand, within MPMX19_05940at 84.718 kb on - strand, within MPMX19_05940at 84.718 kb on - strand, within MPMX19_05940at 84.718 kb on - strand, within MPMX19_05940at 84.718 kb on - strand, within MPMX19_05940at 84.718 kb on - strand, within MPMX19_05940at 84.718 kb on - strand, within MPMX19_05940at 84.753 kb on + strand, within MPMX19_05940at 84.753 kb on + strand, within MPMX19_05940at 84.753 kb on + strand, within MPMX19_05940at 84.753 kb on + strand, within MPMX19_05940at 84.753 kb on + strand, within MPMX19_05940at 84.753 kb on + strand, within MPMX19_05940at 84.753 kb on + strand, within MPMX19_05940at 84.753 kb on + strand, within MPMX19_05940at 84.753 kb on + strand, within MPMX19_05940at 84.753 kb on + strand, within MPMX19_05940at 84.754 kb on - strand, within MPMX19_05940at 84.754 kb on - strand, within MPMX19_05940at 84.754 kb on - strand, within MPMX19_05940at 84.754 kb on - strand, within MPMX19_05940at 84.754 kb on - strand, within MPMX19_05940at 84.754 kb on - strand, within MPMX19_05940at 84.754 kb on - strand, within MPMX19_05940at 84.754 kb on - strand, within MPMX19_05940at 84.754 kb on - strand, within MPMX19_05940at 84.754 kb on - strand, within MPMX19_05940at 84.754 kb on - strand, within MPMX19_05940at 84.837 kb on + strand, within MPMX19_05940at 85.227 kb on + strandat 85.228 kb on - strandat 85.355 kb on + strandat 85.433 kb on + strandat 85.433 kb on + strandat 85.433 kb on + strandat 85.433 kb on + strandat 85.433 kb on + strandat 85.433 kb on + strandat 85.433 kb on + strandat 85.433 kb on + strandat 85.434 kb on - strandat 85.434 kb on - strandat 85.434 kb on - strandat 85.434 kb on - strandat 85.434 kb on - strandat 85.434 kb on - strandat 85.434 kb on - strandat 85.434 kb on - strandat 85.434 kb on - strandat 85.434 kb on - strandat 85.434 kb on - strandat 85.604 kb on + strand, within MPMX19_05941at 85.605 kb on - strand, within MPMX19_05941at 85.605 kb on - strand, within MPMX19_05941at 85.634 kb on + strand, within MPMX19_05941at 85.635 kb on - strand, within MPMX19_05941at 86.078 kb on + strand, within MPMX19_05941at 86.078 kb on + strand, within MPMX19_05941at 86.078 kb on + strand, within MPMX19_05941at 86.079 kb on - strand, within MPMX19_05941at 86.079 kb on - strand, within MPMX19_05941at 86.079 kb on - strand, within MPMX19_05941at 86.079 kb on - strand, within MPMX19_05941at 86.213 kb on + strand, within MPMX19_05941at 86.213 kb on + strand, within MPMX19_05941at 86.213 kb on + strand, within MPMX19_05941at 86.213 kb on + strand, within MPMX19_05941at 86.213 kb on + strand, within MPMX19_05941at 86.213 kb on + strand, within MPMX19_05941at 86.213 kb on + strand, within MPMX19_05941at 86.213 kb on + strand, within MPMX19_05941at 86.213 kb on + strand, within MPMX19_05941at 86.213 kb on + strand, within MPMX19_05941at 86.213 kb on + strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941at 86.214 kb on - strand, within MPMX19_05941

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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83,534 + MPMX19_05939 0.52 -2.0
83,534 + MPMX19_05939 0.52 -0.6
83,534 + MPMX19_05939 0.52 +0.3
83,534 + MPMX19_05939 0.52 -0.1
83,534 + MPMX19_05939 0.52 -1.1
83,535 - MPMX19_05939 0.52 -1.0
83,535 - MPMX19_05939 0.52 +0.2
83,535 - MPMX19_05939 0.52 -2.9
83,981 + MPMX19_05939 0.76 -0.2
83,981 + MPMX19_05939 0.76 -1.0
83,981 + MPMX19_05939 0.76 -0.1
83,981 + MPMX19_05939 0.76 -0.9
83,982 - MPMX19_05939 0.76 -0.9
83,982 - MPMX19_05939 0.76 -0.4
83,982 - MPMX19_05939 0.76 +0.2
83,982 - MPMX19_05939 0.76 +0.4
84,017 + MPMX19_05939 0.78 +1.0
84,017 + MPMX19_05939 0.78 -0.4
84,017 + MPMX19_05939 0.78 -1.1
84,018 - MPMX19_05939 0.78 +0.3
84,106 + MPMX19_05939 0.83 +2.2
84,107 - MPMX19_05939 0.83 -0.1
84,107 - MPMX19_05939 0.83 -1.1
84,349 + -1.6
84,349 + -1.3
84,349 + -1.5
84,349 + -0.8
84,349 + -0.3
84,349 + -0.7
84,349 + -1.0
84,349 + +2.2
84,350 - +0.0
84,350 - -0.6
84,350 - +0.2
84,350 - -1.5
84,350 - +1.2
84,350 - +1.2
84,350 - -0.7
84,350 - +0.0
84,350 - -2.1
84,350 - -1.0
84,350 - -1.6
84,512 + -0.3
84,512 + -0.6
84,512 + -0.4
84,512 + -0.8
84,512 + +1.2
84,513 - +0.4
84,513 - -0.8
84,513 - -2.1
84,513 - +0.2
84,513 - -0.5
84,513 - +0.2
84,513 - -1.6
84,513 - -0.1
84,687 + MPMX19_05940 0.24 -0.4
84,687 + MPMX19_05940 0.24 -0.2
84,687 + MPMX19_05940 0.24 -0.3
84,687 + MPMX19_05940 0.24 +0.7
84,687 + MPMX19_05940 0.24 +2.2
84,687 + MPMX19_05940 0.24 -0.7
84,687 + MPMX19_05940 0.24 -0.7
84,687 + MPMX19_05940 0.24 -0.1
84,687 + MPMX19_05940 0.24 -0.2
84,687 + MPMX19_05940 0.24 -0.3
84,687 + MPMX19_05940 0.24 +0.5
84,687 + MPMX19_05940 0.24 -1.4
84,687 + MPMX19_05940 0.24 -0.8
84,688 - MPMX19_05940 0.24 +0.2
84,688 - MPMX19_05940 0.24 -1.1
84,688 - MPMX19_05940 0.24 +0.1
84,688 - MPMX19_05940 0.24 +0.0
84,688 - MPMX19_05940 0.24 -0.8
84,688 - MPMX19_05940 0.24 -0.1
84,688 - MPMX19_05940 0.24 +0.2
84,688 - MPMX19_05940 0.24 -1.4
84,717 + MPMX19_05940 0.28 +0.0
84,717 + MPMX19_05940 0.28 +1.2
84,717 + MPMX19_05940 0.28 +0.9
84,717 + MPMX19_05940 0.28 -0.7
84,717 + MPMX19_05940 0.28 -0.6
84,717 + MPMX19_05940 0.28 -0.2
84,717 + MPMX19_05940 0.28 -0.6
84,717 + MPMX19_05940 0.28 -1.3
84,717 + MPMX19_05940 0.28 -0.8
84,717 + MPMX19_05940 0.28 -0.1
84,717 + MPMX19_05940 0.28 -0.1
84,717 + MPMX19_05940 0.28 -0.3
84,718 - MPMX19_05940 0.28 -0.2
84,718 - MPMX19_05940 0.28 +1.1
84,718 - MPMX19_05940 0.28 -0.6
84,718 - MPMX19_05940 0.28 -1.7
84,718 - MPMX19_05940 0.28 -1.4
84,718 - MPMX19_05940 0.28 +0.1
84,753 + MPMX19_05940 0.33 +1.4
84,753 + MPMX19_05940 0.33 -0.4
84,753 + MPMX19_05940 0.33 +0.0
84,753 + MPMX19_05940 0.33 +0.5
84,753 + MPMX19_05940 0.33 -1.1
84,753 + MPMX19_05940 0.33 +0.2
84,753 + MPMX19_05940 0.33 -0.9
84,753 + MPMX19_05940 0.33 +0.2
84,753 + MPMX19_05940 0.33 +1.5
84,753 + MPMX19_05940 0.33 -1.3
84,754 - MPMX19_05940 0.33 -0.7
84,754 - MPMX19_05940 0.33 -0.4
84,754 - MPMX19_05940 0.33 +0.0
84,754 - MPMX19_05940 0.33 +1.2
84,754 - MPMX19_05940 0.33 +1.0
84,754 - MPMX19_05940 0.33 -1.4
84,754 - MPMX19_05940 0.33 -0.0
84,754 - MPMX19_05940 0.33 -0.8
84,754 - MPMX19_05940 0.33 -0.6
84,754 - MPMX19_05940 0.33 -1.3
84,754 - MPMX19_05940 0.33 -0.1
84,837 + MPMX19_05940 0.45 +0.4
85,227 + +0.0
85,228 - -0.6
85,355 + -0.6
85,433 + -1.3
85,433 + +1.8
85,433 + -1.2
85,433 + -1.2
85,433 + -1.7
85,433 + -1.1
85,433 + -1.5
85,433 + -0.6
85,434 - -0.7
85,434 - -1.6
85,434 - -0.1
85,434 - +0.9
85,434 - -0.4
85,434 - -1.4
85,434 - +0.0
85,434 - -0.7
85,434 - +1.6
85,434 - +0.1
85,434 - -0.8
85,604 + MPMX19_05941 0.23 -0.1
85,605 - MPMX19_05941 0.23 -0.1
85,605 - MPMX19_05941 0.23 +0.1
85,634 + MPMX19_05941 0.26 +1.0
85,635 - MPMX19_05941 0.26 -1.3
86,078 + MPMX19_05941 0.66 +0.5
86,078 + MPMX19_05941 0.66 -0.8
86,078 + MPMX19_05941 0.66 -1.7
86,079 - MPMX19_05941 0.67 +1.2
86,079 - MPMX19_05941 0.67 +0.1
86,079 - MPMX19_05941 0.67 -1.3
86,079 - MPMX19_05941 0.67 +1.6
86,213 + MPMX19_05941 0.79 -1.1
86,213 + MPMX19_05941 0.79 +0.2
86,213 + MPMX19_05941 0.79 -0.9
86,213 + MPMX19_05941 0.79 -0.7
86,213 + MPMX19_05941 0.79 -0.4
86,213 + MPMX19_05941 0.79 -0.1
86,213 + MPMX19_05941 0.79 -0.4
86,213 + MPMX19_05941 0.79 +0.5
86,213 + MPMX19_05941 0.79 -0.0
86,213 + MPMX19_05941 0.79 -1.0
86,213 + MPMX19_05941 0.79 -0.6
86,214 - MPMX19_05941 0.79 +1.6
86,214 - MPMX19_05941 0.79 +0.6
86,214 - MPMX19_05941 0.79 -0.4
86,214 - MPMX19_05941 0.79 +0.9
86,214 - MPMX19_05941 0.79 +0.9
86,214 - MPMX19_05941 0.79 +0.2
86,214 - MPMX19_05941 0.79 -0.1
86,214 - MPMX19_05941 0.79 -0.0
86,214 - MPMX19_05941 0.79 -1.1
86,214 - MPMX19_05941 0.79 -0.7
86,214 - MPMX19_05941 0.79 +0.8
86,214 - MPMX19_05941 0.79 -1.7
86,214 - MPMX19_05941 0.79 +0.5

Or see this region's nucleotide sequence