Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05918

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05916 and MPMX19_05917 are separated by 13 nucleotidesMPMX19_05917 and MPMX19_05918 are separated by 94 nucleotidesMPMX19_05918 and MPMX19_05919 are separated by 4 nucleotidesMPMX19_05919 and MPMX19_05920 are separated by 9 nucleotides MPMX19_05916: MPMX19_05916 - hypothetical protein, at 52,140 to 52,826 _05916 MPMX19_05917: MPMX19_05917 - hypothetical protein, at 52,840 to 53,178 _05917 MPMX19_05918: MPMX19_05918 - Flagellar biosynthetic protein FliP, at 53,273 to 54,163 _05918 MPMX19_05919: MPMX19_05919 - hypothetical protein, at 54,168 to 54,464 _05919 MPMX19_05920: MPMX19_05920 - Flagellar motor switch protein FliG, at 54,474 to 55,502 _05920 Position (kb) 53 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 53.355 kb on + strandat 53.355 kb on + strandat 53.356 kb on - strandat 53.356 kb on - strandat 53.356 kb on - strandat 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.384 kb on - strand, within MPMX19_05918at 53.384 kb on - strand, within MPMX19_05918at 53.384 kb on - strand, within MPMX19_05918at 53.384 kb on - strand, within MPMX19_05918at 53.395 kb on + strand, within MPMX19_05918at 53.395 kb on + strand, within MPMX19_05918at 53.395 kb on + strand, within MPMX19_05918at 53.395 kb on + strand, within MPMX19_05918at 53.395 kb on + strand, within MPMX19_05918at 53.396 kb on - strand, within MPMX19_05918at 53.876 kb on - strand, within MPMX19_05918at 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.504 kb on + strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.505 kb on - strandat 54.720 kb on + strand, within MPMX19_05920at 54.720 kb on + strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.721 kb on - strand, within MPMX19_05920at 54.858 kb on + strand, within MPMX19_05920at 54.858 kb on + strand, within MPMX19_05920at 54.858 kb on + strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.859 kb on - strand, within MPMX19_05920at 54.873 kb on + strand, within MPMX19_05920at 54.874 kb on - strand, within MPMX19_05920at 54.874 kb on - strand, within MPMX19_05920at 55.056 kb on + strand, within MPMX19_05920at 55.056 kb on + strand, within MPMX19_05920at 55.057 kb on - strand, within MPMX19_05920at 55.057 kb on - strand, within MPMX19_05920at 55.057 kb on - strand, within MPMX19_05920

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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52,921 + MPMX19_05917 0.24 +0.5
52,921 + MPMX19_05917 0.24 -0.0
52,921 + MPMX19_05917 0.24 -0.3
52,921 + MPMX19_05917 0.24 -0.8
52,921 + MPMX19_05917 0.24 -1.8
52,921 + MPMX19_05917 0.24 +0.0
52,921 + MPMX19_05917 0.24 -0.5
52,921 + MPMX19_05917 0.24 -0.0
52,921 + MPMX19_05917 0.24 -1.0
52,921 + MPMX19_05917 0.24 +0.0
52,921 + MPMX19_05917 0.24 -0.6
52,921 + MPMX19_05917 0.24 +0.0
52,921 + MPMX19_05917 0.24 -0.7
52,921 + MPMX19_05917 0.24 +0.5
52,921 + MPMX19_05917 0.24 +0.2
52,921 + MPMX19_05917 0.24 -0.5
52,922 - MPMX19_05917 0.24 +0.4
52,922 - MPMX19_05917 0.24 +1.1
52,922 - MPMX19_05917 0.24 +1.2
52,922 - MPMX19_05917 0.24 +0.3
52,922 - MPMX19_05917 0.24 -1.6
52,922 - MPMX19_05917 0.24 -0.3
52,922 - MPMX19_05917 0.24 +0.2
52,922 - MPMX19_05917 0.24 -1.0
52,922 - MPMX19_05917 0.24 -0.7
52,922 - MPMX19_05917 0.24 -0.5
52,945 + MPMX19_05917 0.31 -0.5
52,945 + MPMX19_05917 0.31 -1.1
52,945 + MPMX19_05917 0.31 -1.7
52,945 + MPMX19_05917 0.31 -1.9
52,945 + MPMX19_05917 0.31 -0.5
52,945 + MPMX19_05917 0.31 -1.9
52,945 + MPMX19_05917 0.31 -0.5
52,945 + MPMX19_05917 0.31 -1.0
52,945 + MPMX19_05917 0.31 -0.4
52,945 + MPMX19_05917 0.31 +1.5
52,945 + MPMX19_05917 0.31 -1.1
52,945 + MPMX19_05917 0.31 -1.4
52,945 + MPMX19_05917 0.31 -1.5
52,945 + MPMX19_05917 0.31 -0.6
52,945 + MPMX19_05917 0.31 -1.1
52,945 + MPMX19_05917 0.31 +0.6
52,945 + MPMX19_05917 0.31 -0.2
52,946 - MPMX19_05917 0.31 +0.0
52,946 - MPMX19_05917 0.31 -0.9
52,946 - MPMX19_05917 0.31 +1.2
52,946 - MPMX19_05917 0.31 +0.2
52,946 - MPMX19_05917 0.31 -0.8
52,946 - MPMX19_05917 0.31 -0.3
52,946 - MPMX19_05917 0.31 -1.3
52,946 - MPMX19_05917 0.31 -0.2
52,946 - MPMX19_05917 0.31 -0.0
52,946 - MPMX19_05917 0.31 +1.3
52,946 - MPMX19_05917 0.31 +0.9
52,946 - MPMX19_05917 0.31 -0.1
52,946 - MPMX19_05917 0.31 -0.1
52,946 - MPMX19_05917 0.31 +0.6
52,946 - MPMX19_05917 0.31 +0.8
52,946 - MPMX19_05917 0.31 +0.2
53,355 + +0.0
53,355 + -2.8
53,356 - +0.2
53,356 - -0.4
53,356 - +1.0
53,383 + MPMX19_05918 0.12 +0.0
53,383 + MPMX19_05918 0.12 +0.6
53,383 + MPMX19_05918 0.12 -1.7
53,383 + MPMX19_05918 0.12 -1.4
53,383 + MPMX19_05918 0.12 -1.1
53,383 + MPMX19_05918 0.12 -1.8
53,383 + MPMX19_05918 0.12 -0.8
53,384 - MPMX19_05918 0.12 -1.8
53,384 - MPMX19_05918 0.12 -0.0
53,384 - MPMX19_05918 0.12 -1.4
53,384 - MPMX19_05918 0.12 +0.3
53,395 + MPMX19_05918 0.14 +0.3
53,395 + MPMX19_05918 0.14 +0.5
53,395 + MPMX19_05918 0.14 -2.6
53,395 + MPMX19_05918 0.14 +0.0
53,395 + MPMX19_05918 0.14 -2.3
53,396 - MPMX19_05918 0.14 +0.8
53,876 - MPMX19_05918 0.68 -0.8
54,152 + -1.0
54,152 + -0.6
54,152 + +1.5
54,152 + -1.6
54,152 + -0.9
54,152 + -0.7
54,153 - +1.3
54,153 - -1.5
54,153 - -1.8
54,153 - +1.1
54,153 - +0.4
54,153 - +0.6
54,153 - -0.8
54,504 + -0.7
54,504 + +0.0
54,504 + -2.3
54,504 + +0.3
54,504 + -0.5
54,504 + +0.4
54,504 + -0.3
54,504 + -0.4
54,504 + -1.6
54,504 + -0.1
54,504 + -0.7
54,504 + +1.0
54,504 + -0.1
54,504 + +0.6
54,505 - -1.3
54,505 - -1.1
54,505 - -0.4
54,505 - -1.6
54,505 - +0.2
54,505 - +1.9
54,505 - -0.6
54,505 - -0.6
54,505 - -0.6
54,505 - +0.2
54,720 + MPMX19_05920 0.24 -0.9
54,720 + MPMX19_05920 0.24 +0.3
54,721 - MPMX19_05920 0.24 -2.0
54,721 - MPMX19_05920 0.24 -0.2
54,721 - MPMX19_05920 0.24 -0.1
54,721 - MPMX19_05920 0.24 -0.6
54,858 + MPMX19_05920 0.37 +0.4
54,858 + MPMX19_05920 0.37 +1.2
54,858 + MPMX19_05920 0.37 +1.2
54,859 - MPMX19_05920 0.37 -0.1
54,859 - MPMX19_05920 0.37 -0.9
54,859 - MPMX19_05920 0.37 -1.5
54,859 - MPMX19_05920 0.37 -1.5
54,859 - MPMX19_05920 0.37 +0.6
54,859 - MPMX19_05920 0.37 +0.0
54,859 - MPMX19_05920 0.37 -1.5
54,859 - MPMX19_05920 0.37 +0.1
54,859 - MPMX19_05920 0.37 -0.6
54,859 - MPMX19_05920 0.37 +0.4
54,859 - MPMX19_05920 0.37 +0.8
54,873 + MPMX19_05920 0.39 -1.0
54,874 - MPMX19_05920 0.39 -1.1
54,874 - MPMX19_05920 0.39 +1.1
55,056 + MPMX19_05920 0.57 -0.6
55,056 + MPMX19_05920 0.57 -0.1
55,057 - MPMX19_05920 0.57 -1.0
55,057 - MPMX19_05920 0.57 -0.6
55,057 - MPMX19_05920 0.57 -1.5

Or see this region's nucleotide sequence