Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05911

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05910 and MPMX19_05911 are separated by 5 nucleotidesMPMX19_05911 and MPMX19_05912 overlap by 4 nucleotidesMPMX19_05912 and MPMX19_05913 overlap by 20 nucleotides MPMX19_05910: MPMX19_05910 - hypothetical protein, at 45,740 to 47,131 _05910 MPMX19_05911: MPMX19_05911 - hypothetical protein, at 47,137 to 47,874 _05911 MPMX19_05912: MPMX19_05912 - hypothetical protein, at 47,871 to 48,512 _05912 MPMX19_05913: MPMX19_05913 - hypothetical protein, at 48,493 to 49,665 _05913 Position (kb) 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 46.188 kb on + strand, within MPMX19_05910at 46.188 kb on + strand, within MPMX19_05910at 46.188 kb on + strand, within MPMX19_05910at 46.188 kb on + strand, within MPMX19_05910at 46.188 kb on + strand, within MPMX19_05910at 46.188 kb on + strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.520 kb on + strand, within MPMX19_05910at 46.520 kb on + strand, within MPMX19_05910at 46.521 kb on - strand, within MPMX19_05910at 46.532 kb on + strand, within MPMX19_05910at 46.533 kb on - strand, within MPMX19_05910at 46.759 kb on + strand, within MPMX19_05910at 46.759 kb on + strand, within MPMX19_05910at 46.759 kb on + strand, within MPMX19_05910at 46.760 kb on - strand, within MPMX19_05910at 47.337 kb on + strand, within MPMX19_05911at 47.338 kb on - strand, within MPMX19_05911at 47.338 kb on - strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 48.454 kb on + strandat 48.454 kb on + strandat 48.455 kb on - strandat 48.455 kb on - strandat 48.842 kb on + strand, within MPMX19_05913at 48.842 kb on + strand, within MPMX19_05913

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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46,188 + MPMX19_05910 0.32 -1.6
46,188 + MPMX19_05910 0.32 -1.0
46,188 + MPMX19_05910 0.32 +1.2
46,188 + MPMX19_05910 0.32 -0.4
46,188 + MPMX19_05910 0.32 -0.0
46,188 + MPMX19_05910 0.32 +0.1
46,189 - MPMX19_05910 0.32 -2.2
46,189 - MPMX19_05910 0.32 -0.1
46,189 - MPMX19_05910 0.32 -0.1
46,189 - MPMX19_05910 0.32 +0.9
46,189 - MPMX19_05910 0.32 -0.5
46,189 - MPMX19_05910 0.32 -0.4
46,189 - MPMX19_05910 0.32 -0.6
46,189 - MPMX19_05910 0.32 +0.8
46,189 - MPMX19_05910 0.32 -0.1
46,520 + MPMX19_05910 0.56 +0.2
46,520 + MPMX19_05910 0.56 -0.1
46,521 - MPMX19_05910 0.56 -0.6
46,532 + MPMX19_05910 0.57 -0.3
46,533 - MPMX19_05910 0.57 -0.3
46,759 + MPMX19_05910 0.73 +0.4
46,759 + MPMX19_05910 0.73 -1.9
46,759 + MPMX19_05910 0.73 -1.4
46,760 - MPMX19_05910 0.73 -0.2
47,337 + MPMX19_05911 0.27 +0.0
47,338 - MPMX19_05911 0.27 +0.1
47,338 - MPMX19_05911 0.27 +0.2
47,393 + MPMX19_05911 0.35 -1.5
47,393 + MPMX19_05911 0.35 +2.2
47,393 + MPMX19_05911 0.35 -0.4
47,393 + MPMX19_05911 0.35 -1.4
47,393 + MPMX19_05911 0.35 -0.4
47,393 + MPMX19_05911 0.35 +1.1
47,394 - MPMX19_05911 0.35 -1.8
47,394 - MPMX19_05911 0.35 -0.5
47,394 - MPMX19_05911 0.35 +0.2
47,394 - MPMX19_05911 0.35 +1.0
47,394 - MPMX19_05911 0.35 +0.1
47,394 - MPMX19_05911 0.35 -0.0
47,911 + -1.1
47,911 + -1.1
47,911 + -0.9
47,911 + -1.0
47,911 + +1.0
47,911 + -0.5
47,911 + -0.5
47,911 + +0.6
47,911 + +0.5
47,911 + -1.7
47,911 + +0.1
47,911 + -1.0
47,911 + -0.5
47,911 + -0.0
47,911 + -1.0
47,911 + -0.9
47,911 + +0.4
47,912 - -2.5
47,912 - -1.3
47,912 - +0.5
47,912 - +0.2
47,912 - -1.2
47,912 - -0.3
47,912 - +0.2
47,912 - -1.5
47,912 - +0.2
47,912 - -0.3
47,912 - +1.2
47,912 - -0.8
47,912 - -0.2
47,912 - -0.7
48,454 + +0.4
48,454 + -0.3
48,455 - -0.6
48,455 - +0.2
48,842 + MPMX19_05913 0.30 +0.3
48,842 + MPMX19_05913 0.30 -1.5

Or see this region's nucleotide sequence