Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05906

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05904 and MPMX19_05905 are separated by 24 nucleotidesMPMX19_05905 and MPMX19_05906 overlap by 4 nucleotidesMPMX19_05906 and MPMX19_05907 are separated by 26 nucleotidesMPMX19_05907 and MPMX19_05908 are separated by 46 nucleotides MPMX19_05904: MPMX19_05904 - Flagellar basal-body rod protein FlgG, at 41,500 to 42,231 _05904 MPMX19_05905: MPMX19_05905 - Flagellar basal-body rod protein FlgG, at 42,256 to 43,041 _05905 MPMX19_05906: MPMX19_05906 - hypothetical protein, at 43,038 to 43,748 _05906 MPMX19_05907: MPMX19_05907 - Flagellar L-ring protein, at 43,775 to 44,506 _05907 MPMX19_05908: MPMX19_05908 - hypothetical protein, at 44,553 to 45,020 _05908 Position (kb) 43 44Strain fitness (log2 ratio) -2 -1 0 1 2at 42.151 kb on + strand, within MPMX19_05904at 42.151 kb on + strand, within MPMX19_05904at 42.151 kb on + strand, within MPMX19_05904at 42.152 kb on - strand, within MPMX19_05904at 42.152 kb on - strand, within MPMX19_05904at 42.152 kb on - strand, within MPMX19_05904at 42.152 kb on - strand, within MPMX19_05904at 42.229 kb on + strandat 42.229 kb on + strandat 42.229 kb on + strandat 42.229 kb on + strandat 42.229 kb on + strandat 42.229 kb on + strandat 42.230 kb on - strandat 42.230 kb on - strandat 42.230 kb on - strandat 42.230 kb on - strandat 42.230 kb on - strandat 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.560 kb on - strand, within MPMX19_05905at 42.595 kb on + strand, within MPMX19_05905at 42.595 kb on + strand, within MPMX19_05905at 42.595 kb on + strand, within MPMX19_05905at 42.595 kb on + strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.734 kb on - strand, within MPMX19_05905at 42.734 kb on - strand, within MPMX19_05905at 42.734 kb on - strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.908 kb on - strand, within MPMX19_05905at 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strandat 43.572 kb on + strand, within MPMX19_05906at 43.572 kb on + strand, within MPMX19_05906at 43.573 kb on - strand, within MPMX19_05906at 43.573 kb on - strand, within MPMX19_05906at 43.573 kb on - strand, within MPMX19_05906at 43.751 kb on + strandat 43.751 kb on + strandat 43.751 kb on + strandat 43.751 kb on + strandat 43.752 kb on - strandat 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.324 kb on + strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.325 kb on - strand, within MPMX19_05907at 44.396 kb on + strand, within MPMX19_05907at 44.396 kb on + strand, within MPMX19_05907at 44.396 kb on + strand, within MPMX19_05907at 44.397 kb on - strand, within MPMX19_05907at 44.397 kb on - strand, within MPMX19_05907at 44.397 kb on - strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.426 kb on + strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.427 kb on - strand, within MPMX19_05907at 44.688 kb on + strand, within MPMX19_05908at 44.688 kb on + strand, within MPMX19_05908at 44.688 kb on + strand, within MPMX19_05908at 44.688 kb on + strand, within MPMX19_05908at 44.688 kb on + strand, within MPMX19_05908at 44.689 kb on - strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.691 kb on + strand, within MPMX19_05908at 44.692 kb on - strand, within MPMX19_05908at 44.692 kb on - strand, within MPMX19_05908at 44.692 kb on - strand, within MPMX19_05908at 44.692 kb on - strand, within MPMX19_05908at 44.692 kb on - strand, within MPMX19_05908

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
42,151 + MPMX19_05904 0.89 -1.2
42,151 + MPMX19_05904 0.89 -0.1
42,151 + MPMX19_05904 0.89 -2.1
42,152 - MPMX19_05904 0.89 +0.2
42,152 - MPMX19_05904 0.89 -0.1
42,152 - MPMX19_05904 0.89 -0.1
42,152 - MPMX19_05904 0.89 +0.4
42,229 + -0.6
42,229 + +2.2
42,229 + +0.1
42,229 + -1.2
42,229 + +0.4
42,229 + +0.4
42,230 - +1.1
42,230 - +0.2
42,230 - -1.8
42,230 - -0.3
42,230 - -0.2
42,388 + MPMX19_05905 0.17 +1.0
42,388 + MPMX19_05905 0.17 +0.1
42,388 + MPMX19_05905 0.17 +0.1
42,388 + MPMX19_05905 0.17 +0.5
42,388 + MPMX19_05905 0.17 -1.6
42,388 + MPMX19_05905 0.17 +0.8
42,388 + MPMX19_05905 0.17 +1.6
42,388 + MPMX19_05905 0.17 +0.6
42,388 + MPMX19_05905 0.17 -0.4
42,388 + MPMX19_05905 0.17 -0.4
42,388 + MPMX19_05905 0.17 -0.2
42,389 - MPMX19_05905 0.17 -0.4
42,389 - MPMX19_05905 0.17 -1.6
42,389 - MPMX19_05905 0.17 -1.0
42,389 - MPMX19_05905 0.17 -0.2
42,389 - MPMX19_05905 0.17 -0.8
42,389 - MPMX19_05905 0.17 +0.2
42,389 - MPMX19_05905 0.17 -1.3
42,389 - MPMX19_05905 0.17 -1.7
42,389 - MPMX19_05905 0.17 -0.8
42,560 - MPMX19_05905 0.39 +0.3
42,595 + MPMX19_05905 0.43 -1.3
42,595 + MPMX19_05905 0.43 -1.6
42,595 + MPMX19_05905 0.43 +0.9
42,595 + MPMX19_05905 0.43 +2.0
42,596 - MPMX19_05905 0.43 -0.1
42,596 - MPMX19_05905 0.43 -0.2
42,596 - MPMX19_05905 0.43 +0.2
42,596 - MPMX19_05905 0.43 -1.3
42,596 - MPMX19_05905 0.43 +0.5
42,596 - MPMX19_05905 0.43 -0.8
42,596 - MPMX19_05905 0.43 -0.2
42,733 + MPMX19_05905 0.61 -0.5
42,733 + MPMX19_05905 0.61 -0.1
42,733 + MPMX19_05905 0.61 +0.9
42,733 + MPMX19_05905 0.61 -1.3
42,733 + MPMX19_05905 0.61 -0.7
42,733 + MPMX19_05905 0.61 -0.8
42,734 - MPMX19_05905 0.61 -2.2
42,734 - MPMX19_05905 0.61 -0.3
42,734 - MPMX19_05905 0.61 +0.1
42,907 + MPMX19_05905 0.83 -1.1
42,907 + MPMX19_05905 0.83 -1.1
42,907 + MPMX19_05905 0.83 -1.3
42,907 + MPMX19_05905 0.83 -1.0
42,907 + MPMX19_05905 0.83 +0.6
42,908 - MPMX19_05905 0.83 +0.6
42,974 - -1.9
42,974 - +0.1
42,974 - -1.1
42,974 - +0.4
42,974 - -2.1
42,974 - -0.1
43,572 + MPMX19_05906 0.75 +0.0
43,572 + MPMX19_05906 0.75 -1.3
43,573 - MPMX19_05906 0.75 -0.7
43,573 - MPMX19_05906 0.75 +1.5
43,573 - MPMX19_05906 0.75 -0.3
43,751 + -1.8
43,751 + -1.3
43,751 + -0.4
43,751 + +0.8
43,752 - -1.0
44,324 + MPMX19_05907 0.75 -1.1
44,324 + MPMX19_05907 0.75 +0.2
44,324 + MPMX19_05907 0.75 -1.6
44,324 + MPMX19_05907 0.75 +1.6
44,324 + MPMX19_05907 0.75 -0.8
44,324 + MPMX19_05907 0.75 -0.7
44,324 + MPMX19_05907 0.75 -1.9
44,325 - MPMX19_05907 0.75 +0.2
44,325 - MPMX19_05907 0.75 -0.1
44,325 - MPMX19_05907 0.75 +1.2
44,325 - MPMX19_05907 0.75 +1.6
44,325 - MPMX19_05907 0.75 +0.1
44,325 - MPMX19_05907 0.75 -1.4
44,396 + MPMX19_05907 0.85 +0.3
44,396 + MPMX19_05907 0.85 +0.0
44,396 + MPMX19_05907 0.85 -0.3
44,397 - MPMX19_05907 0.85 +0.5
44,397 - MPMX19_05907 0.85 +0.5
44,397 - MPMX19_05907 0.85 -1.5
44,426 + MPMX19_05907 0.89 +0.5
44,426 + MPMX19_05907 0.89 +1.1
44,426 + MPMX19_05907 0.89 -1.1
44,426 + MPMX19_05907 0.89 -0.1
44,426 + MPMX19_05907 0.89 -0.6
44,426 + MPMX19_05907 0.89 -2.1
44,426 + MPMX19_05907 0.89 -0.3
44,426 + MPMX19_05907 0.89 -0.1
44,426 + MPMX19_05907 0.89 +0.3
44,426 + MPMX19_05907 0.89 -1.0
44,426 + MPMX19_05907 0.89 -2.1
44,427 - MPMX19_05907 0.89 +0.6
44,427 - MPMX19_05907 0.89 -1.0
44,427 - MPMX19_05907 0.89 +0.5
44,427 - MPMX19_05907 0.89 -0.4
44,427 - MPMX19_05907 0.89 -0.8
44,427 - MPMX19_05907 0.89 -0.5
44,427 - MPMX19_05907 0.89 +0.3
44,427 - MPMX19_05907 0.89 +1.3
44,427 - MPMX19_05907 0.89 -1.4
44,427 - MPMX19_05907 0.89 +0.4
44,427 - MPMX19_05907 0.89 +1.7
44,688 + MPMX19_05908 0.29 +0.9
44,688 + MPMX19_05908 0.29 -1.1
44,688 + MPMX19_05908 0.29 -1.1
44,688 + MPMX19_05908 0.29 -0.8
44,688 + MPMX19_05908 0.29 -0.7
44,689 - MPMX19_05908 0.29 -2.1
44,691 + MPMX19_05908 0.29 -1.9
44,691 + MPMX19_05908 0.29 +0.4
44,691 + MPMX19_05908 0.29 -0.8
44,691 + MPMX19_05908 0.29 -0.2
44,691 + MPMX19_05908 0.29 -0.9
44,691 + MPMX19_05908 0.29 +1.5
44,691 + MPMX19_05908 0.29 -1.0
44,691 + MPMX19_05908 0.29 -2.3
44,691 + MPMX19_05908 0.29 -0.9
44,691 + MPMX19_05908 0.29 -1.2
44,692 - MPMX19_05908 0.30 -0.7
44,692 - MPMX19_05908 0.30 -2.1
44,692 - MPMX19_05908 0.30 -0.4
44,692 - MPMX19_05908 0.30 +0.9
44,692 - MPMX19_05908 0.30 -0.5

Or see this region's nucleotide sequence