Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05903 and MPMX19_05904 are separated by 144 nucleotides MPMX19_05904 and MPMX19_05905 are separated by 24 nucleotides MPMX19_05905 and MPMX19_05906 overlap by 4 nucleotides
MPMX19_05903: MPMX19_05903 - hypothetical protein, at 38,872 to 41,355
_05903
MPMX19_05904: MPMX19_05904 - Flagellar basal-body rod protein FlgG, at 41,500 to 42,231
_05904
MPMX19_05905: MPMX19_05905 - Flagellar basal-body rod protein FlgG, at 42,256 to 43,041
_05905
MPMX19_05906: MPMX19_05906 - hypothetical protein, at 43,038 to 43,748
_05906
Position (kb)
41
42
43 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 40.746 kb on + strand, within MPMX19_05903 at 40.782 kb on + strand, within MPMX19_05903 at 40.782 kb on + strand, within MPMX19_05903 at 40.783 kb on - strand, within MPMX19_05903 at 40.783 kb on - strand, within MPMX19_05903 at 40.783 kb on - strand, within MPMX19_05903 at 40.783 kb on - strand, within MPMX19_05903 at 40.858 kb on - strand, within MPMX19_05903 at 40.887 kb on + strand, within MPMX19_05903 at 41.237 kb on + strand at 41.237 kb on + strand at 41.238 kb on - strand at 41.238 kb on - strand at 41.450 kb on - strand at 41.468 kb on + strand at 41.469 kb on - strand at 41.515 kb on + strand at 41.515 kb on + strand at 41.515 kb on + strand at 41.515 kb on + strand at 41.515 kb on + strand at 41.516 kb on - strand at 41.516 kb on - strand at 41.516 kb on - strand at 41.516 kb on - strand at 41.516 kb on - strand at 41.516 kb on - strand at 41.581 kb on - strand, within MPMX19_05904 at 41.581 kb on - strand, within MPMX19_05904 at 41.589 kb on + strand, within MPMX19_05904 at 41.589 kb on + strand, within MPMX19_05904 at 41.589 kb on + strand, within MPMX19_05904 at 41.692 kb on + strand, within MPMX19_05904 at 41.692 kb on + strand, within MPMX19_05904 at 41.692 kb on + strand, within MPMX19_05904 at 41.692 kb on + strand, within MPMX19_05904 at 41.692 kb on + strand, within MPMX19_05904 at 41.692 kb on + strand, within MPMX19_05904 at 41.693 kb on - strand, within MPMX19_05904 at 41.693 kb on - strand, within MPMX19_05904 at 41.693 kb on - strand, within MPMX19_05904 at 41.693 kb on - strand, within MPMX19_05904 at 41.693 kb on - strand, within MPMX19_05904 at 41.693 kb on - strand, within MPMX19_05904 at 41.693 kb on - strand, within MPMX19_05904 at 41.693 kb on - strand, within MPMX19_05904 at 41.693 kb on - strand, within MPMX19_05904 at 41.693 kb on - strand, within MPMX19_05904 at 41.737 kb on + strand, within MPMX19_05904 at 41.737 kb on + strand, within MPMX19_05904 at 41.738 kb on - strand, within MPMX19_05904 at 41.738 kb on - strand, within MPMX19_05904 at 41.738 kb on - strand, within MPMX19_05904 at 41.797 kb on + strand, within MPMX19_05904 at 41.797 kb on + strand, within MPMX19_05904 at 41.797 kb on + strand, within MPMX19_05904 at 41.798 kb on - strand, within MPMX19_05904 at 41.798 kb on - strand, within MPMX19_05904 at 41.798 kb on - strand, within MPMX19_05904 at 41.857 kb on + strand, within MPMX19_05904 at 42.151 kb on + strand, within MPMX19_05904 at 42.151 kb on + strand, within MPMX19_05904 at 42.151 kb on + strand, within MPMX19_05904 at 42.152 kb on - strand, within MPMX19_05904 at 42.152 kb on - strand, within MPMX19_05904 at 42.152 kb on - strand, within MPMX19_05904 at 42.152 kb on - strand, within MPMX19_05904 at 42.229 kb on + strand at 42.229 kb on + strand at 42.229 kb on + strand at 42.229 kb on + strand at 42.229 kb on + strand at 42.229 kb on + strand at 42.230 kb on - strand at 42.230 kb on - strand at 42.230 kb on - strand at 42.230 kb on - strand at 42.230 kb on - strand at 42.388 kb on + strand, within MPMX19_05905 at 42.388 kb on + strand, within MPMX19_05905 at 42.388 kb on + strand, within MPMX19_05905 at 42.388 kb on + strand, within MPMX19_05905 at 42.388 kb on + strand, within MPMX19_05905 at 42.388 kb on + strand, within MPMX19_05905 at 42.388 kb on + strand, within MPMX19_05905 at 42.388 kb on + strand, within MPMX19_05905 at 42.388 kb on + strand, within MPMX19_05905 at 42.388 kb on + strand, within MPMX19_05905 at 42.388 kb on + strand, within MPMX19_05905 at 42.389 kb on - strand, within MPMX19_05905 at 42.389 kb on - strand, within MPMX19_05905 at 42.389 kb on - strand, within MPMX19_05905 at 42.389 kb on - strand, within MPMX19_05905 at 42.389 kb on - strand, within MPMX19_05905 at 42.389 kb on - strand, within MPMX19_05905 at 42.389 kb on - strand, within MPMX19_05905 at 42.389 kb on - strand, within MPMX19_05905 at 42.389 kb on - strand, within MPMX19_05905 at 42.560 kb on - strand, within MPMX19_05905 at 42.595 kb on + strand, within MPMX19_05905 at 42.595 kb on + strand, within MPMX19_05905 at 42.595 kb on + strand, within MPMX19_05905 at 42.595 kb on + strand, within MPMX19_05905 at 42.596 kb on - strand, within MPMX19_05905 at 42.596 kb on - strand, within MPMX19_05905 at 42.596 kb on - strand, within MPMX19_05905 at 42.596 kb on - strand, within MPMX19_05905 at 42.596 kb on - strand, within MPMX19_05905 at 42.596 kb on - strand, within MPMX19_05905 at 42.596 kb on - strand, within MPMX19_05905 at 42.733 kb on + strand, within MPMX19_05905 at 42.733 kb on + strand, within MPMX19_05905 at 42.733 kb on + strand, within MPMX19_05905 at 42.733 kb on + strand, within MPMX19_05905 at 42.733 kb on + strand, within MPMX19_05905 at 42.733 kb on + strand, within MPMX19_05905 at 42.734 kb on - strand, within MPMX19_05905 at 42.734 kb on - strand, within MPMX19_05905 at 42.734 kb on - strand, within MPMX19_05905 at 42.907 kb on + strand, within MPMX19_05905 at 42.907 kb on + strand, within MPMX19_05905 at 42.907 kb on + strand, within MPMX19_05905 at 42.907 kb on + strand, within MPMX19_05905 at 42.907 kb on + strand, within MPMX19_05905 at 42.908 kb on - strand, within MPMX19_05905 at 42.974 kb on - strand at 42.974 kb on - strand at 42.974 kb on - strand at 42.974 kb on - strand at 42.974 kb on - strand at 42.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 40,746 + MPMX19_05903 0.75 -1.5 40,782 + MPMX19_05903 0.77 +1.2 40,782 + MPMX19_05903 0.77 -0.0 40,783 - MPMX19_05903 0.77 +0.6 40,783 - MPMX19_05903 0.77 +0.0 40,783 - MPMX19_05903 0.77 -0.2 40,783 - MPMX19_05903 0.77 +0.2 40,858 - MPMX19_05903 0.80 -0.4 40,887 + MPMX19_05903 0.81 -1.4 41,237 + +0.2 41,237 + -0.2 41,238 - -1.9 41,238 - +1.0 41,450 - -0.9 41,468 + +0.2 41,469 - +0.5 41,515 + -0.7 41,515 + +1.6 41,515 + +0.0 41,515 + +1.6 41,515 + -0.4 41,516 - +1.0 41,516 - -1.0 41,516 - -1.0 41,516 - -1.1 41,516 - -1.1 41,516 - -1.0 41,581 - MPMX19_05904 0.11 +1.1 41,581 - MPMX19_05904 0.11 +0.4 41,589 + MPMX19_05904 0.12 -0.5 41,589 + MPMX19_05904 0.12 +0.0 41,589 + MPMX19_05904 0.12 +0.3 41,692 + MPMX19_05904 0.26 -1.3 41,692 + MPMX19_05904 0.26 -0.1 41,692 + MPMX19_05904 0.26 +0.6 41,692 + MPMX19_05904 0.26 -0.4 41,692 + MPMX19_05904 0.26 -0.3 41,692 + MPMX19_05904 0.26 -1.1 41,693 - MPMX19_05904 0.26 -0.3 41,693 - MPMX19_05904 0.26 -1.1 41,693 - MPMX19_05904 0.26 +0.2 41,693 - MPMX19_05904 0.26 -2.1 41,693 - MPMX19_05904 0.26 +1.0 41,693 - MPMX19_05904 0.26 -0.7 41,693 - MPMX19_05904 0.26 -0.4 41,693 - MPMX19_05904 0.26 +0.2 41,693 - MPMX19_05904 0.26 -0.1 41,693 - MPMX19_05904 0.26 -0.8 41,737 + MPMX19_05904 0.32 -1.3 41,737 + MPMX19_05904 0.32 -0.1 41,738 - MPMX19_05904 0.33 -0.8 41,738 - MPMX19_05904 0.33 -1.4 41,738 - MPMX19_05904 0.33 +1.5 41,797 + MPMX19_05904 0.41 -1.6 41,797 + MPMX19_05904 0.41 -1.7 41,797 + MPMX19_05904 0.41 -0.6 41,798 - MPMX19_05904 0.41 +0.3 41,798 - MPMX19_05904 0.41 -0.1 41,798 - MPMX19_05904 0.41 +0.4 41,857 + MPMX19_05904 0.49 -0.1 42,151 + MPMX19_05904 0.89 -1.2 42,151 + MPMX19_05904 0.89 -0.1 42,151 + MPMX19_05904 0.89 -2.1 42,152 - MPMX19_05904 0.89 +0.2 42,152 - MPMX19_05904 0.89 -0.1 42,152 - MPMX19_05904 0.89 -0.1 42,152 - MPMX19_05904 0.89 +0.4 42,229 + -0.6 42,229 + +2.2 42,229 + +0.1 42,229 + -1.2 42,229 + +0.4 42,229 + +0.4 42,230 - +1.1 42,230 - +0.2 42,230 - -1.8 42,230 - -0.3 42,230 - -0.2 42,388 + MPMX19_05905 0.17 +1.0 42,388 + MPMX19_05905 0.17 +0.1 42,388 + MPMX19_05905 0.17 +0.1 42,388 + MPMX19_05905 0.17 +0.5 42,388 + MPMX19_05905 0.17 -1.6 42,388 + MPMX19_05905 0.17 +0.8 42,388 + MPMX19_05905 0.17 +1.6 42,388 + MPMX19_05905 0.17 +0.6 42,388 + MPMX19_05905 0.17 -0.4 42,388 + MPMX19_05905 0.17 -0.4 42,388 + MPMX19_05905 0.17 -0.2 42,389 - MPMX19_05905 0.17 -0.4 42,389 - MPMX19_05905 0.17 -1.6 42,389 - MPMX19_05905 0.17 -1.0 42,389 - MPMX19_05905 0.17 -0.2 42,389 - MPMX19_05905 0.17 -0.8 42,389 - MPMX19_05905 0.17 +0.2 42,389 - MPMX19_05905 0.17 -1.3 42,389 - MPMX19_05905 0.17 -1.7 42,389 - MPMX19_05905 0.17 -0.8 42,560 - MPMX19_05905 0.39 +0.3 42,595 + MPMX19_05905 0.43 -1.3 42,595 + MPMX19_05905 0.43 -1.6 42,595 + MPMX19_05905 0.43 +0.9 42,595 + MPMX19_05905 0.43 +2.0 42,596 - MPMX19_05905 0.43 -0.1 42,596 - MPMX19_05905 0.43 -0.2 42,596 - MPMX19_05905 0.43 +0.2 42,596 - MPMX19_05905 0.43 -1.3 42,596 - MPMX19_05905 0.43 +0.5 42,596 - MPMX19_05905 0.43 -0.8 42,596 - MPMX19_05905 0.43 -0.2 42,733 + MPMX19_05905 0.61 -0.5 42,733 + MPMX19_05905 0.61 -0.1 42,733 + MPMX19_05905 0.61 +0.9 42,733 + MPMX19_05905 0.61 -1.3 42,733 + MPMX19_05905 0.61 -0.7 42,733 + MPMX19_05905 0.61 -0.8 42,734 - MPMX19_05905 0.61 -2.2 42,734 - MPMX19_05905 0.61 -0.3 42,734 - MPMX19_05905 0.61 +0.1 42,907 + MPMX19_05905 0.83 -1.1 42,907 + MPMX19_05905 0.83 -1.1 42,907 + MPMX19_05905 0.83 -1.3 42,907 + MPMX19_05905 0.83 -1.0 42,907 + MPMX19_05905 0.83 +0.6 42,908 - MPMX19_05905 0.83 +0.6 42,974 - -1.9 42,974 - +0.1 42,974 - -1.1 42,974 - +0.4 42,974 - -2.1 42,974 - -0.1
Or see this region's nucleotide sequence