Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05904

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05903 and MPMX19_05904 are separated by 144 nucleotidesMPMX19_05904 and MPMX19_05905 are separated by 24 nucleotidesMPMX19_05905 and MPMX19_05906 overlap by 4 nucleotides MPMX19_05903: MPMX19_05903 - hypothetical protein, at 38,872 to 41,355 _05903 MPMX19_05904: MPMX19_05904 - Flagellar basal-body rod protein FlgG, at 41,500 to 42,231 _05904 MPMX19_05905: MPMX19_05905 - Flagellar basal-body rod protein FlgG, at 42,256 to 43,041 _05905 MPMX19_05906: MPMX19_05906 - hypothetical protein, at 43,038 to 43,748 _05906 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1 2at 40.746 kb on + strand, within MPMX19_05903at 40.782 kb on + strand, within MPMX19_05903at 40.782 kb on + strand, within MPMX19_05903at 40.783 kb on - strand, within MPMX19_05903at 40.783 kb on - strand, within MPMX19_05903at 40.783 kb on - strand, within MPMX19_05903at 40.783 kb on - strand, within MPMX19_05903at 40.858 kb on - strand, within MPMX19_05903at 40.887 kb on + strand, within MPMX19_05903at 41.237 kb on + strandat 41.237 kb on + strandat 41.238 kb on - strandat 41.238 kb on - strandat 41.450 kb on - strandat 41.468 kb on + strandat 41.469 kb on - strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.515 kb on + strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.516 kb on - strandat 41.581 kb on - strand, within MPMX19_05904at 41.581 kb on - strand, within MPMX19_05904at 41.589 kb on + strand, within MPMX19_05904at 41.589 kb on + strand, within MPMX19_05904at 41.589 kb on + strand, within MPMX19_05904at 41.692 kb on + strand, within MPMX19_05904at 41.692 kb on + strand, within MPMX19_05904at 41.692 kb on + strand, within MPMX19_05904at 41.692 kb on + strand, within MPMX19_05904at 41.692 kb on + strand, within MPMX19_05904at 41.692 kb on + strand, within MPMX19_05904at 41.693 kb on - strand, within MPMX19_05904at 41.693 kb on - strand, within MPMX19_05904at 41.693 kb on - strand, within MPMX19_05904at 41.693 kb on - strand, within MPMX19_05904at 41.693 kb on - strand, within MPMX19_05904at 41.693 kb on - strand, within MPMX19_05904at 41.693 kb on - strand, within MPMX19_05904at 41.693 kb on - strand, within MPMX19_05904at 41.693 kb on - strand, within MPMX19_05904at 41.693 kb on - strand, within MPMX19_05904at 41.737 kb on + strand, within MPMX19_05904at 41.737 kb on + strand, within MPMX19_05904at 41.738 kb on - strand, within MPMX19_05904at 41.738 kb on - strand, within MPMX19_05904at 41.738 kb on - strand, within MPMX19_05904at 41.797 kb on + strand, within MPMX19_05904at 41.797 kb on + strand, within MPMX19_05904at 41.797 kb on + strand, within MPMX19_05904at 41.798 kb on - strand, within MPMX19_05904at 41.798 kb on - strand, within MPMX19_05904at 41.798 kb on - strand, within MPMX19_05904at 41.857 kb on + strand, within MPMX19_05904at 42.151 kb on + strand, within MPMX19_05904at 42.151 kb on + strand, within MPMX19_05904at 42.151 kb on + strand, within MPMX19_05904at 42.152 kb on - strand, within MPMX19_05904at 42.152 kb on - strand, within MPMX19_05904at 42.152 kb on - strand, within MPMX19_05904at 42.152 kb on - strand, within MPMX19_05904at 42.229 kb on + strandat 42.229 kb on + strandat 42.229 kb on + strandat 42.229 kb on + strandat 42.229 kb on + strandat 42.229 kb on + strandat 42.230 kb on - strandat 42.230 kb on - strandat 42.230 kb on - strandat 42.230 kb on - strandat 42.230 kb on - strandat 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.388 kb on + strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.389 kb on - strand, within MPMX19_05905at 42.560 kb on - strand, within MPMX19_05905at 42.595 kb on + strand, within MPMX19_05905at 42.595 kb on + strand, within MPMX19_05905at 42.595 kb on + strand, within MPMX19_05905at 42.595 kb on + strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.596 kb on - strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.733 kb on + strand, within MPMX19_05905at 42.734 kb on - strand, within MPMX19_05905at 42.734 kb on - strand, within MPMX19_05905at 42.734 kb on - strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.907 kb on + strand, within MPMX19_05905at 42.908 kb on - strand, within MPMX19_05905at 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strandat 42.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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40,746 + MPMX19_05903 0.75 -1.5
40,782 + MPMX19_05903 0.77 +1.2
40,782 + MPMX19_05903 0.77 -0.0
40,783 - MPMX19_05903 0.77 +0.6
40,783 - MPMX19_05903 0.77 +0.0
40,783 - MPMX19_05903 0.77 -0.2
40,783 - MPMX19_05903 0.77 +0.2
40,858 - MPMX19_05903 0.80 -0.4
40,887 + MPMX19_05903 0.81 -1.4
41,237 + +0.2
41,237 + -0.2
41,238 - -1.9
41,238 - +1.0
41,450 - -0.9
41,468 + +0.2
41,469 - +0.5
41,515 + -0.7
41,515 + +1.6
41,515 + +0.0
41,515 + +1.6
41,515 + -0.4
41,516 - +1.0
41,516 - -1.0
41,516 - -1.0
41,516 - -1.1
41,516 - -1.1
41,516 - -1.0
41,581 - MPMX19_05904 0.11 +1.1
41,581 - MPMX19_05904 0.11 +0.4
41,589 + MPMX19_05904 0.12 -0.5
41,589 + MPMX19_05904 0.12 +0.0
41,589 + MPMX19_05904 0.12 +0.3
41,692 + MPMX19_05904 0.26 -1.3
41,692 + MPMX19_05904 0.26 -0.1
41,692 + MPMX19_05904 0.26 +0.6
41,692 + MPMX19_05904 0.26 -0.4
41,692 + MPMX19_05904 0.26 -0.3
41,692 + MPMX19_05904 0.26 -1.1
41,693 - MPMX19_05904 0.26 -0.3
41,693 - MPMX19_05904 0.26 -1.1
41,693 - MPMX19_05904 0.26 +0.2
41,693 - MPMX19_05904 0.26 -2.1
41,693 - MPMX19_05904 0.26 +1.0
41,693 - MPMX19_05904 0.26 -0.7
41,693 - MPMX19_05904 0.26 -0.4
41,693 - MPMX19_05904 0.26 +0.2
41,693 - MPMX19_05904 0.26 -0.1
41,693 - MPMX19_05904 0.26 -0.8
41,737 + MPMX19_05904 0.32 -1.3
41,737 + MPMX19_05904 0.32 -0.1
41,738 - MPMX19_05904 0.33 -0.8
41,738 - MPMX19_05904 0.33 -1.4
41,738 - MPMX19_05904 0.33 +1.5
41,797 + MPMX19_05904 0.41 -1.6
41,797 + MPMX19_05904 0.41 -1.7
41,797 + MPMX19_05904 0.41 -0.6
41,798 - MPMX19_05904 0.41 +0.3
41,798 - MPMX19_05904 0.41 -0.1
41,798 - MPMX19_05904 0.41 +0.4
41,857 + MPMX19_05904 0.49 -0.1
42,151 + MPMX19_05904 0.89 -1.2
42,151 + MPMX19_05904 0.89 -0.1
42,151 + MPMX19_05904 0.89 -2.1
42,152 - MPMX19_05904 0.89 +0.2
42,152 - MPMX19_05904 0.89 -0.1
42,152 - MPMX19_05904 0.89 -0.1
42,152 - MPMX19_05904 0.89 +0.4
42,229 + -0.6
42,229 + +2.2
42,229 + +0.1
42,229 + -1.2
42,229 + +0.4
42,229 + +0.4
42,230 - +1.1
42,230 - +0.2
42,230 - -1.8
42,230 - -0.3
42,230 - -0.2
42,388 + MPMX19_05905 0.17 +1.0
42,388 + MPMX19_05905 0.17 +0.1
42,388 + MPMX19_05905 0.17 +0.1
42,388 + MPMX19_05905 0.17 +0.5
42,388 + MPMX19_05905 0.17 -1.6
42,388 + MPMX19_05905 0.17 +0.8
42,388 + MPMX19_05905 0.17 +1.6
42,388 + MPMX19_05905 0.17 +0.6
42,388 + MPMX19_05905 0.17 -0.4
42,388 + MPMX19_05905 0.17 -0.4
42,388 + MPMX19_05905 0.17 -0.2
42,389 - MPMX19_05905 0.17 -0.4
42,389 - MPMX19_05905 0.17 -1.6
42,389 - MPMX19_05905 0.17 -1.0
42,389 - MPMX19_05905 0.17 -0.2
42,389 - MPMX19_05905 0.17 -0.8
42,389 - MPMX19_05905 0.17 +0.2
42,389 - MPMX19_05905 0.17 -1.3
42,389 - MPMX19_05905 0.17 -1.7
42,389 - MPMX19_05905 0.17 -0.8
42,560 - MPMX19_05905 0.39 +0.3
42,595 + MPMX19_05905 0.43 -1.3
42,595 + MPMX19_05905 0.43 -1.6
42,595 + MPMX19_05905 0.43 +0.9
42,595 + MPMX19_05905 0.43 +2.0
42,596 - MPMX19_05905 0.43 -0.1
42,596 - MPMX19_05905 0.43 -0.2
42,596 - MPMX19_05905 0.43 +0.2
42,596 - MPMX19_05905 0.43 -1.3
42,596 - MPMX19_05905 0.43 +0.5
42,596 - MPMX19_05905 0.43 -0.8
42,596 - MPMX19_05905 0.43 -0.2
42,733 + MPMX19_05905 0.61 -0.5
42,733 + MPMX19_05905 0.61 -0.1
42,733 + MPMX19_05905 0.61 +0.9
42,733 + MPMX19_05905 0.61 -1.3
42,733 + MPMX19_05905 0.61 -0.7
42,733 + MPMX19_05905 0.61 -0.8
42,734 - MPMX19_05905 0.61 -2.2
42,734 - MPMX19_05905 0.61 -0.3
42,734 - MPMX19_05905 0.61 +0.1
42,907 + MPMX19_05905 0.83 -1.1
42,907 + MPMX19_05905 0.83 -1.1
42,907 + MPMX19_05905 0.83 -1.3
42,907 + MPMX19_05905 0.83 -1.0
42,907 + MPMX19_05905 0.83 +0.6
42,908 - MPMX19_05905 0.83 +0.6
42,974 - -1.9
42,974 - +0.1
42,974 - -1.1
42,974 - +0.4
42,974 - -2.1
42,974 - -0.1

Or see this region's nucleotide sequence