Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05880

Experiment: NL-CCM, start OD=0.3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.3
8,560	-		MPMX19_05878	0.66	+0.3
8,560	-		MPMX19_05878	0.66	-0.3
8,646	+		MPMX19_05878	0.77	-0.9
8,646	+		MPMX19_05878	0.77	-0.1
8,646	+		MPMX19_05878	0.77	-1.4
8,646	+		MPMX19_05878	0.77	-0.2
8,646	+		MPMX19_05878	0.77	-0.6
8,646	+		MPMX19_05878	0.77	+1.2
8,646	+		MPMX19_05878	0.77	+0.9
8,647	-		MPMX19_05878	0.77	-0.8
8,647	-		MPMX19_05878	0.77	-0.8
8,647	-		MPMX19_05878	0.77	-0.1
8,647	-		MPMX19_05878	0.77	-1.5
8,647	-		MPMX19_05878	0.77	+0.2
8,647	-		MPMX19_05878	0.77	-0.6
8,870	+				-0.1
8,870	+				+1.0
8,871	-				-0.7
8,871	-				+0.3
8,885	+				-1.0
8,885	+				-0.4
8,886	-				-0.4
8,957	+		MPMX19_05879	0.11	-0.5
8,957	+		MPMX19_05879	0.11	-0.3
8,957	+		MPMX19_05879	0.11	+0.6
8,957	+		MPMX19_05879	0.11	-0.0
8,957	+		MPMX19_05879	0.11	-0.5
8,957	+		MPMX19_05879	0.11	-2.1
8,958	-		MPMX19_05879	0.11	+0.4
8,958	-		MPMX19_05879	0.11	-0.5
9,089	+		MPMX19_05879	0.31	-1.5
9,089	+		MPMX19_05879	0.31	+1.0
9,089	+		MPMX19_05879	0.31	+0.0
9,090	-		MPMX19_05879	0.31	-1.7
9,140	+		MPMX19_05879	0.39	+0.1
9,140	+		MPMX19_05879	0.39	+0.3
9,140	+		MPMX19_05879	0.39	+0.0
9,140	+		MPMX19_05879	0.39	-0.4
9,141	-		MPMX19_05879	0.39	-0.1
9,141	-		MPMX19_05879	0.39	-1.3
9,141	-		MPMX19_05879	0.39	-1.6
9,141	-		MPMX19_05879	0.39	-0.6
9,141	-		MPMX19_05879	0.39	-0.1
9,158	+		MPMX19_05879	0.42	-0.8
9,158	+		MPMX19_05879	0.42	+0.7
9,371	+		MPMX19_05879	0.74	-0.7
9,371	+		MPMX19_05879	0.74	-1.1
9,372	-		MPMX19_05879	0.75	-2.9
9,519	-				+0.3
9,571	-				-0.7
9,588	+				-1.4
9,588	+				-1.2
9,588	+				-0.6
9,588	+				-0.4
9,589	-				-0.6
9,589	-				-0.1
9,589	-				-0.7
9,633	+		MPMX19_05880	0.12	-0.8
9,633	+		MPMX19_05880	0.12	-1.1
9,633	+		MPMX19_05880	0.12	+0.2
9,633	+		MPMX19_05880	0.12	-1.0
9,633	+		MPMX19_05880	0.12	+0.5
9,634	-		MPMX19_05880	0.12	+0.6
9,634	-		MPMX19_05880	0.12	-0.4
9,634	-		MPMX19_05880	0.12	-1.5
9,634	-		MPMX19_05880	0.12	-0.9
9,654	+		MPMX19_05880	0.15	-0.9
9,654	+		MPMX19_05880	0.15	+0.8
9,654	+		MPMX19_05880	0.15	+0.9
9,654	+		MPMX19_05880	0.15	-0.1
9,655	-		MPMX19_05880	0.15	-1.0
9,783	+		MPMX19_05880	0.34	-0.3
9,783	+		MPMX19_05880	0.34	-1.2
9,816	+		MPMX19_05880	0.39	-2.7
9,816	+		MPMX19_05880	0.39	-0.6
9,816	+		MPMX19_05880	0.39	-1.6
9,816	+		MPMX19_05880	0.39	+0.2
9,816	+		MPMX19_05880	0.39	-0.6
9,816	+		MPMX19_05880	0.39	-0.6
9,816	+		MPMX19_05880	0.39	-0.8
9,816	+		MPMX19_05880	0.39	-1.1
9,817	-		MPMX19_05880	0.39	+0.2
9,817	-		MPMX19_05880	0.39	-0.4
9,817	-		MPMX19_05880	0.39	-1.3
9,915	+		MPMX19_05880	0.54	-0.6
9,915	+		MPMX19_05880	0.54	-1.3
9,915	+		MPMX19_05880	0.54	-0.1
9,915	+		MPMX19_05880	0.54	-0.3
9,916	-		MPMX19_05880	0.54	-1.1
10,047	+		MPMX19_05880	0.73	+0.6
10,047	+		MPMX19_05880	0.73	+1.6
10,047	+		MPMX19_05880	0.73	-0.6
10,047	+		MPMX19_05880	0.73	+1.0
10,047	+		MPMX19_05880	0.73	+0.3
10,047	+		MPMX19_05880	0.73	-2.5
10,047	+		MPMX19_05880	0.73	-0.4
10,047	+		MPMX19_05880	0.73	-1.1
10,048	-		MPMX19_05880	0.74	+1.5
10,048	-		MPMX19_05880	0.74	-1.1
10,048	-		MPMX19_05880	0.74	-0.9
10,048	-		MPMX19_05880	0.74	+0.3
10,048	-		MPMX19_05880	0.74	+0.5
10,048	-		MPMX19_05880	0.74	-0.6
10,179	+				-1.4
10,179	+				+0.2
10,180	-				+0.6
10,180	-				-1.7
10,180	-				+0.6
10,180	-				+0.2
10,218	+				+0.8
10,218	+				+1.0
10,218	+				-0.2
10,218	+				-1.0
10,219	-				+1.2
10,714	+		MPMX19_05881	0.11	+0.5
10,714	+		MPMX19_05881	0.11	-1.1
10,715	-		MPMX19_05881	0.11	-0.7
10,715	-		MPMX19_05881	0.11	-1.1
10,715	-		MPMX19_05881	0.11	+0.5
10,715	-		MPMX19_05881	0.11	+0.5
10,715	-		MPMX19_05881	0.11	-0.6
10,716	+		MPMX19_05881	0.11	-0.4
10,716	+		MPMX19_05881	0.11	-0.5
10,716	+		MPMX19_05881	0.11	-0.0
10,717	-		MPMX19_05881	0.11	-0.8
10,717	-		MPMX19_05881	0.11	-0.6
10,717	-		MPMX19_05881	0.11	-0.4
10,768	+		MPMX19_05881	0.14	-0.3
10,768	+		MPMX19_05881	0.14	-1.3
10,768	+		MPMX19_05881	0.14	-0.5
10,768	+		MPMX19_05881	0.14	+0.6
10,768	+		MPMX19_05881	0.14	-0.4
10,768	+		MPMX19_05881	0.14	+0.6
10,768	+		MPMX19_05881	0.14	+0.7
10,768	+		MPMX19_05881	0.14	+0.6
10,768	+		MPMX19_05881	0.14	-1.1
10,768	+		MPMX19_05881	0.14	+0.5
10,768	+		MPMX19_05881	0.14	-1.1
10,768	+		MPMX19_05881	0.14	-1.1
10,768	+		MPMX19_05881	0.14	-0.3
10,768	+		MPMX19_05881	0.14	-0.8
10,768	+		MPMX19_05881	0.14	-0.3
10,768	+		MPMX19_05881	0.14	-0.8
10,769	-		MPMX19_05881	0.14	+0.9
10,769	-		MPMX19_05881	0.14	-0.3
10,769	-		MPMX19_05881	0.14	-1.3
10,769	-		MPMX19_05881	0.14	-1.0
10,769	-		MPMX19_05881	0.14	-1.3
10,769	-		MPMX19_05881	0.14	+0.4
10,769	-		MPMX19_05881	0.14	-1.0
10,769	-		MPMX19_05881	0.14	-0.4
10,769	-		MPMX19_05881	0.14	+0.2
10,769	-		MPMX19_05881	0.14	-1.0
10,769	-		MPMX19_05881	0.14	-1.3
10,769	-		MPMX19_05881	0.14	-1.9
10,769	-		MPMX19_05881	0.14	+0.1
10,769	-		MPMX19_05881	0.14	-1.3
10,769	-		MPMX19_05881	0.14	-0.1
10,861	+		MPMX19_05881	0.21	-0.3
10,861	+		MPMX19_05881	0.21	-1.2
10,861	+		MPMX19_05881	0.21	-1.1
10,861	+		MPMX19_05881	0.21	-0.8
10,861	+		MPMX19_05881	0.21	+1.4
10,861	+		MPMX19_05881	0.21	-1.2
10,862	-		MPMX19_05881	0.21	-0.2
10,862	-		MPMX19_05881	0.21	+1.2
10,862	-		MPMX19_05881	0.21	-1.6
10,862	-		MPMX19_05881	0.21	+0.2
10,862	-		MPMX19_05881	0.21	-1.5
10,862	-		MPMX19_05881	0.21	+0.6
10,912	+		MPMX19_05881	0.24	+0.6
10,912	+		MPMX19_05881	0.24	+0.6
10,912	+		MPMX19_05881	0.24	-0.5
10,913	-		MPMX19_05881	0.24	+0.5
10,913	-		MPMX19_05881	0.24	-0.9
10,913	-		MPMX19_05881	0.24	-1.1
10,913	-		MPMX19_05881	0.24	-0.6
10,913	-		MPMX19_05881	0.24	-1.8
10,914	+		MPMX19_05881	0.24	-1.1
10,914	+		MPMX19_05881	0.24	-1.1
10,914	+		MPMX19_05881	0.24	-2.5
10,914	+		MPMX19_05881	0.24	+1.4
10,914	+		MPMX19_05881	0.24	+0.2
10,914	+		MPMX19_05881	0.24	-0.6
10,914	+		MPMX19_05881	0.24	+1.0
10,914	+		MPMX19_05881	0.24	-1.4
10,914	+		MPMX19_05881	0.24	-0.0
10,914	+		MPMX19_05881	0.24	-2.4
10,914	+		MPMX19_05881	0.24	+0.6
10,914	+		MPMX19_05881	0.24	-1.7
10,914	+		MPMX19_05881	0.24	-1.9
10,914	+		MPMX19_05881	0.24	-0.4
10,914	+		MPMX19_05881	0.24	-0.4
10,914	+		MPMX19_05881	0.24	-0.2
10,914	+		MPMX19_05881	0.24	-0.3
10,914	+		MPMX19_05881	0.24	-2.0
10,914	+		MPMX19_05881	0.24	-0.4
10,915	-		MPMX19_05881	0.24	-0.6
10,915	-		MPMX19_05881	0.24	-0.1
10,915	-		MPMX19_05881	0.24	+1.5
10,915	-		MPMX19_05881	0.24	-0.4
10,915	-		MPMX19_05881	0.24	-0.3
10,915	-		MPMX19_05881	0.24	-1.2
10,915	-		MPMX19_05881	0.24	+1.4
10,915	-		MPMX19_05881	0.24	-0.2
10,915	-		MPMX19_05881	0.24	+0.3
10,915	-		MPMX19_05881	0.24	-0.6
10,915	-		MPMX19_05881	0.24	-1.6
10,915	-		MPMX19_05881	0.24	-1.6
10,915	-		MPMX19_05881	0.24	+1.2
10,915	-		MPMX19_05881	0.24	-2.5
10,915	-		MPMX19_05881	0.24	-0.6
10,954	+		MPMX19_05881	0.27	+0.2
10,954	+		MPMX19_05881	0.27	+0.4
10,954	+		MPMX19_05881	0.27	+1.0
10,955	-		MPMX19_05881	0.27	+2.8
10,955	-		MPMX19_05881	0.27	+0.6
11,035	+		MPMX19_05881	0.32	-1.4
11,035	+		MPMX19_05881	0.32	+0.4
11,035	+		MPMX19_05881	0.32	-0.3
11,035	+		MPMX19_05881	0.32	-1.7
11,035	+		MPMX19_05881	0.32	-0.3
11,035	+		MPMX19_05881	0.32	-0.8
11,035	+		MPMX19_05881	0.32	+1.3
11,035	+		MPMX19_05881	0.32	+0.3
11,035	+		MPMX19_05881	0.32	-1.1
11,035	+		MPMX19_05881	0.32	+0.0
11,035	+		MPMX19_05881	0.32	+0.9
11,036	-		MPMX19_05881	0.32	-0.8
11,036	-		MPMX19_05881	0.32	-0.2
11,036	-		MPMX19_05881	0.32	-1.6
11,036	-		MPMX19_05881	0.32	+0.1
11,036	-		MPMX19_05881	0.32	+0.6
11,036	-		MPMX19_05881	0.32	+0.6
11,036	-		MPMX19_05881	0.32	+0.6
11,036	-		MPMX19_05881	0.32	-1.5
11,036	-		MPMX19_05881	0.32	-0.6
11,036	-		MPMX19_05881	0.32	+0.2
11,036	-		MPMX19_05881	0.32	-0.1
11,036	-		MPMX19_05881	0.32	+0.8