Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05863

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05862 and MPMX19_05863 are separated by 23 nucleotidesMPMX19_05863 and MPMX19_05864 are separated by 5 nucleotidesMPMX19_05864 and MPMX19_05865 are separated by 52 nucleotides MPMX19_05862: MPMX19_05862 - 3-carboxy-cis,cis-muconate cycloisomerase, at 596,469 to 597,839 _05862 MPMX19_05863: MPMX19_05863 - Protocatechuate 3,4-dioxygenase beta chain, at 597,863 to 598,585 _05863 MPMX19_05864: MPMX19_05864 - Protocatechuate 3,4-dioxygenase alpha chain, at 598,591 to 599,148 _05864 MPMX19_05865: MPMX19_05865 - hypothetical protein, at 599,201 to 601,285 _05865 Position (kb) 597 598 599Strain fitness (log2 ratio) -2 -1 0 1at 597.766 kb on - strandat 597.766 kb on - strandat 597.766 kb on - strandat 597.766 kb on - strandat 597.929 kb on + strandat 597.929 kb on + strandat 597.929 kb on + strandat 597.929 kb on + strandat 597.929 kb on + strandat 597.929 kb on + strandat 597.930 kb on - strandat 597.930 kb on - strandat 597.930 kb on - strandat 597.930 kb on - strandat 597.930 kb on - strandat 597.944 kb on + strand, within MPMX19_05863at 597.944 kb on + strand, within MPMX19_05863at 597.944 kb on + strand, within MPMX19_05863at 597.945 kb on - strand, within MPMX19_05863at 597.945 kb on - strand, within MPMX19_05863at 597.945 kb on - strand, within MPMX19_05863at 598.196 kb on + strand, within MPMX19_05863at 598.196 kb on + strand, within MPMX19_05863at 598.196 kb on + strand, within MPMX19_05863at 598.196 kb on + strand, within MPMX19_05863at 598.196 kb on + strand, within MPMX19_05863at 598.197 kb on - strand, within MPMX19_05863at 598.197 kb on - strand, within MPMX19_05863at 598.197 kb on - strand, within MPMX19_05863at 598.197 kb on - strand, within MPMX19_05863at 598.313 kb on + strand, within MPMX19_05863at 598.313 kb on + strand, within MPMX19_05863at 598.313 kb on + strand, within MPMX19_05863at 598.313 kb on + strand, within MPMX19_05863at 598.314 kb on - strand, within MPMX19_05863at 598.314 kb on - strand, within MPMX19_05863at 598.409 kb on + strand, within MPMX19_05863at 598.409 kb on + strand, within MPMX19_05863at 598.409 kb on + strand, within MPMX19_05863at 598.409 kb on + strand, within MPMX19_05863at 598.410 kb on - strand, within MPMX19_05863at 598.410 kb on - strand, within MPMX19_05863at 598.410 kb on - strand, within MPMX19_05863at 598.410 kb on - strand, within MPMX19_05863at 598.410 kb on - strand, within MPMX19_05863at 598.410 kb on - strand, within MPMX19_05863at 598.410 kb on - strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.448 kb on + strand, within MPMX19_05863at 598.449 kb on - strand, within MPMX19_05863at 598.449 kb on - strand, within MPMX19_05863at 598.449 kb on - strand, within MPMX19_05863at 598.449 kb on - strand, within MPMX19_05863at 598.449 kb on - strand, within MPMX19_05863at 598.449 kb on - strand, within MPMX19_05863at 598.449 kb on - strand, within MPMX19_05863at 598.449 kb on - strand, within MPMX19_05863at 598.449 kb on - strand, within MPMX19_05863at 598.533 kb on - strandat 598.636 kb on + strandat 598.637 kb on - strandat 598.637 kb on - strandat 598.645 kb on + strandat 598.646 kb on - strandat 598.646 kb on - strandat 598.666 kb on + strand, within MPMX19_05864at 598.747 kb on + strand, within MPMX19_05864at 598.747 kb on + strand, within MPMX19_05864at 598.747 kb on + strand, within MPMX19_05864at 598.747 kb on + strand, within MPMX19_05864at 598.747 kb on + strand, within MPMX19_05864at 598.747 kb on + strand, within MPMX19_05864at 598.747 kb on + strand, within MPMX19_05864at 598.747 kb on + strand, within MPMX19_05864at 598.748 kb on - strand, within MPMX19_05864at 598.748 kb on - strand, within MPMX19_05864at 598.748 kb on - strand, within MPMX19_05864at 598.748 kb on - strand, within MPMX19_05864at 598.748 kb on - strand, within MPMX19_05864at 598.870 kb on + strand, within MPMX19_05864at 598.870 kb on + strand, within MPMX19_05864at 598.870 kb on + strand, within MPMX19_05864at 598.870 kb on + strand, within MPMX19_05864at 598.870 kb on + strand, within MPMX19_05864at 598.870 kb on + strand, within MPMX19_05864at 598.870 kb on + strand, within MPMX19_05864at 598.870 kb on + strand, within MPMX19_05864at 598.870 kb on + strand, within MPMX19_05864at 598.870 kb on + strand, within MPMX19_05864at 598.870 kb on + strand, within MPMX19_05864at 598.871 kb on - strand, within MPMX19_05864at 598.871 kb on - strand, within MPMX19_05864at 598.871 kb on - strand, within MPMX19_05864at 598.871 kb on - strand, within MPMX19_05864at 599.092 kb on + strand, within MPMX19_05864at 599.092 kb on + strand, within MPMX19_05864at 599.092 kb on + strand, within MPMX19_05864at 599.092 kb on + strand, within MPMX19_05864at 599.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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597,766 - -1.3
597,766 - -1.8
597,766 - -1.6
597,766 - +1.0
597,929 + +0.3
597,929 + -0.8
597,929 + -1.3
597,929 + -1.2
597,929 + -0.2
597,929 + -1.8
597,930 - -0.3
597,930 - -1.3
597,930 - -0.8
597,930 - -0.3
597,930 - -2.1
597,944 + MPMX19_05863 0.11 -1.4
597,944 + MPMX19_05863 0.11 +0.4
597,944 + MPMX19_05863 0.11 -1.5
597,945 - MPMX19_05863 0.11 -1.1
597,945 - MPMX19_05863 0.11 -0.8
597,945 - MPMX19_05863 0.11 -1.2
598,196 + MPMX19_05863 0.46 -0.3
598,196 + MPMX19_05863 0.46 -0.3
598,196 + MPMX19_05863 0.46 -0.7
598,196 + MPMX19_05863 0.46 +0.1
598,196 + MPMX19_05863 0.46 -0.3
598,197 - MPMX19_05863 0.46 -0.8
598,197 - MPMX19_05863 0.46 -1.8
598,197 - MPMX19_05863 0.46 -0.2
598,197 - MPMX19_05863 0.46 +0.0
598,313 + MPMX19_05863 0.62 -1.1
598,313 + MPMX19_05863 0.62 -0.6
598,313 + MPMX19_05863 0.62 +0.1
598,313 + MPMX19_05863 0.62 -1.0
598,314 - MPMX19_05863 0.62 -2.1
598,314 - MPMX19_05863 0.62 -0.9
598,409 + MPMX19_05863 0.76 -0.1
598,409 + MPMX19_05863 0.76 -1.1
598,409 + MPMX19_05863 0.76 -1.7
598,409 + MPMX19_05863 0.76 -0.4
598,410 - MPMX19_05863 0.76 -1.6
598,410 - MPMX19_05863 0.76 -0.3
598,410 - MPMX19_05863 0.76 +1.5
598,410 - MPMX19_05863 0.76 +1.0
598,410 - MPMX19_05863 0.76 +0.6
598,410 - MPMX19_05863 0.76 -1.7
598,410 - MPMX19_05863 0.76 -0.6
598,448 + MPMX19_05863 0.81 +0.2
598,448 + MPMX19_05863 0.81 -0.8
598,448 + MPMX19_05863 0.81 -1.1
598,448 + MPMX19_05863 0.81 -0.2
598,448 + MPMX19_05863 0.81 +0.7
598,448 + MPMX19_05863 0.81 +0.6
598,448 + MPMX19_05863 0.81 -0.4
598,448 + MPMX19_05863 0.81 +0.1
598,448 + MPMX19_05863 0.81 +0.2
598,448 + MPMX19_05863 0.81 +0.6
598,448 + MPMX19_05863 0.81 -1.8
598,448 + MPMX19_05863 0.81 +0.4
598,448 + MPMX19_05863 0.81 -0.8
598,448 + MPMX19_05863 0.81 +0.6
598,448 + MPMX19_05863 0.81 -2.3
598,449 - MPMX19_05863 0.81 -1.6
598,449 - MPMX19_05863 0.81 -1.1
598,449 - MPMX19_05863 0.81 -1.1
598,449 - MPMX19_05863 0.81 -0.6
598,449 - MPMX19_05863 0.81 +0.4
598,449 - MPMX19_05863 0.81 +0.4
598,449 - MPMX19_05863 0.81 -0.7
598,449 - MPMX19_05863 0.81 -0.8
598,449 - MPMX19_05863 0.81 -2.1
598,533 - -1.5
598,636 + -0.3
598,637 - -1.5
598,637 - -0.8
598,645 + -1.0
598,646 - -0.6
598,646 - -1.0
598,666 + MPMX19_05864 0.13 +0.4
598,747 + MPMX19_05864 0.28 +0.0
598,747 + MPMX19_05864 0.28 -1.0
598,747 + MPMX19_05864 0.28 -0.6
598,747 + MPMX19_05864 0.28 -1.3
598,747 + MPMX19_05864 0.28 -2.1
598,747 + MPMX19_05864 0.28 +1.2
598,747 + MPMX19_05864 0.28 -1.3
598,747 + MPMX19_05864 0.28 -1.3
598,748 - MPMX19_05864 0.28 +0.0
598,748 - MPMX19_05864 0.28 -0.4
598,748 - MPMX19_05864 0.28 +0.0
598,748 - MPMX19_05864 0.28 -1.6
598,748 - MPMX19_05864 0.28 -0.4
598,870 + MPMX19_05864 0.50 -0.1
598,870 + MPMX19_05864 0.50 -0.2
598,870 + MPMX19_05864 0.50 +0.4
598,870 + MPMX19_05864 0.50 +0.8
598,870 + MPMX19_05864 0.50 -0.8
598,870 + MPMX19_05864 0.50 -0.7
598,870 + MPMX19_05864 0.50 +0.0
598,870 + MPMX19_05864 0.50 +0.0
598,870 + MPMX19_05864 0.50 +0.3
598,870 + MPMX19_05864 0.50 -0.7
598,870 + MPMX19_05864 0.50 -1.1
598,871 - MPMX19_05864 0.50 +0.0
598,871 - MPMX19_05864 0.50 -1.0
598,871 - MPMX19_05864 0.50 +0.1
598,871 - MPMX19_05864 0.50 -1.3
599,092 + MPMX19_05864 0.90 -0.9
599,092 + MPMX19_05864 0.90 -1.9
599,092 + MPMX19_05864 0.90 +0.6
599,092 + MPMX19_05864 0.90 +1.0
599,093 - +0.4

Or see this region's nucleotide sequence