Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05857 and MPMX19_05858 overlap by 1 nucleotides MPMX19_05858 and MPMX19_05859 are separated by 4 nucleotides MPMX19_05859 and MPMX19_05860 are separated by 48 nucleotides MPMX19_05860 and MPMX19_05861 overlap by 1 nucleotides
MPMX19_05857: MPMX19_05857 - 3-oxoadipate CoA-transferase subunit A, at 592,334 to 593,206
_05857
MPMX19_05858: MPMX19_05858 - 3-oxoadipate CoA-transferase subunit B, at 593,206 to 594,000
_05858
MPMX19_05859: MPMX19_05859 - Beta-ketoadipyl-CoA thiolase, at 594,005 to 595,204
_05859
MPMX19_05860: MPMX19_05860 - 3-oxoadipate enol-lactonase 2, at 595,253 to 596,050
_05860
MPMX19_05861: MPMX19_05861 - hypothetical protein, at 596,050 to 596,463
_05861
Position (kb) 594
595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 593.019 kb on - strand, within MPMX19_05857 at 593.019 kb on - strand, within MPMX19_05857 at 593.019 kb on - strand, within MPMX19_05857 at 593.027 kb on + strand, within MPMX19_05857 at 593.027 kb on + strand, within MPMX19_05857 at 593.028 kb on - strand, within MPMX19_05857 at 593.028 kb on - strand, within MPMX19_05857 at 593.028 kb on - strand, within MPMX19_05857 at 593.028 kb on - strand, within MPMX19_05857 at 593.039 kb on + strand, within MPMX19_05857 at 593.039 kb on + strand, within MPMX19_05857 at 593.040 kb on - strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.063 kb on + strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.064 kb on - strand, within MPMX19_05857 at 593.365 kb on + strand, within MPMX19_05858 at 593.365 kb on + strand, within MPMX19_05858 at 593.365 kb on + strand, within MPMX19_05858 at 593.365 kb on + strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.366 kb on - strand, within MPMX19_05858 at 593.477 kb on - strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.569 kb on + strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.570 kb on - strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.643 kb on + strand, within MPMX19_05858 at 593.644 kb on - strand, within MPMX19_05858 at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.003 kb on + strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.004 kb on - strand at 594.017 kb on + strand at 594.017 kb on + strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.018 kb on - strand at 594.053 kb on + strand at 594.053 kb on + strand at 594.054 kb on - strand at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.164 kb on + strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.165 kb on - strand, within MPMX19_05859 at 594.476 kb on + strand, within MPMX19_05859 at 594.476 kb on + strand, within MPMX19_05859 at 594.476 kb on + strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 594.477 kb on - strand, within MPMX19_05859 at 595.202 kb on + strand at 595.202 kb on + strand at 595.203 kb on - strand at 595.203 kb on - strand at 595.203 kb on - strand at 595.203 kb on - strand at 595.203 kb on - strand at 595.289 kb on + strand at 595.289 kb on + strand at 595.289 kb on + strand at 595.289 kb on + strand at 595.289 kb on + strand at 595.289 kb on + strand at 595.290 kb on - strand at 595.409 kb on + strand, within MPMX19_05860 at 595.409 kb on + strand, within MPMX19_05860 at 595.409 kb on + strand, within MPMX19_05860 at 595.409 kb on + strand, within MPMX19_05860 at 595.410 kb on - strand, within MPMX19_05860 at 595.410 kb on - strand, within MPMX19_05860 at 595.466 kb on + strand, within MPMX19_05860 at 595.769 kb on + strand, within MPMX19_05860 at 595.769 kb on + strand, within MPMX19_05860 at 595.770 kb on - strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.805 kb on + strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 595.806 kb on - strand, within MPMX19_05860 at 596.083 kb on + strand at 596.083 kb on + strand at 596.083 kb on + strand at 596.083 kb on + strand at 596.083 kb on + strand at 596.083 kb on + strand at 596.084 kb on - strand at 596.084 kb on - strand at 596.084 kb on - strand at 596.084 kb on - strand at 596.084 kb on - strand at 596.084 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 593,019 - MPMX19_05857 0.78 -1.0 593,019 - MPMX19_05857 0.78 -1.6 593,019 - MPMX19_05857 0.78 +1.0 593,027 + MPMX19_05857 0.79 -0.4 593,027 + MPMX19_05857 0.79 -1.3 593,028 - MPMX19_05857 0.79 -0.1 593,028 - MPMX19_05857 0.79 -0.9 593,028 - MPMX19_05857 0.79 -2.6 593,028 - MPMX19_05857 0.79 -2.1 593,039 + MPMX19_05857 0.81 +0.2 593,039 + MPMX19_05857 0.81 -1.3 593,040 - MPMX19_05857 0.81 -0.3 593,063 + MPMX19_05857 0.84 -0.3 593,063 + MPMX19_05857 0.84 -0.7 593,063 + MPMX19_05857 0.84 +0.3 593,063 + MPMX19_05857 0.84 -0.2 593,063 + MPMX19_05857 0.84 +0.7 593,063 + MPMX19_05857 0.84 -1.0 593,063 + MPMX19_05857 0.84 -0.3 593,063 + MPMX19_05857 0.84 -0.1 593,063 + MPMX19_05857 0.84 -0.7 593,063 + MPMX19_05857 0.84 -0.1 593,063 + MPMX19_05857 0.84 +0.9 593,063 + MPMX19_05857 0.84 -0.3 593,063 + MPMX19_05857 0.84 +0.2 593,063 + MPMX19_05857 0.84 -1.7 593,063 + MPMX19_05857 0.84 -0.8 593,063 + MPMX19_05857 0.84 +0.9 593,063 + MPMX19_05857 0.84 -0.6 593,063 + MPMX19_05857 0.84 -0.4 593,064 - MPMX19_05857 0.84 -0.4 593,064 - MPMX19_05857 0.84 -0.5 593,064 - MPMX19_05857 0.84 -1.3 593,064 - MPMX19_05857 0.84 -0.6 593,064 - MPMX19_05857 0.84 -1.0 593,064 - MPMX19_05857 0.84 -0.4 593,064 - MPMX19_05857 0.84 +0.1 593,064 - MPMX19_05857 0.84 -1.1 593,064 - MPMX19_05857 0.84 -0.0 593,064 - MPMX19_05857 0.84 +0.6 593,064 - MPMX19_05857 0.84 -0.1 593,064 - MPMX19_05857 0.84 +0.4 593,064 - MPMX19_05857 0.84 -1.7 593,064 - MPMX19_05857 0.84 -1.2 593,064 - MPMX19_05857 0.84 +0.3 593,064 - MPMX19_05857 0.84 +0.0 593,064 - MPMX19_05857 0.84 -1.0 593,064 - MPMX19_05857 0.84 -1.0 593,064 - MPMX19_05857 0.84 -0.1 593,064 - MPMX19_05857 0.84 -0.2 593,064 - MPMX19_05857 0.84 +0.4 593,365 + MPMX19_05858 0.20 -2.3 593,365 + MPMX19_05858 0.20 -0.2 593,365 + MPMX19_05858 0.20 +0.6 593,365 + MPMX19_05858 0.20 -0.6 593,366 - MPMX19_05858 0.20 +0.0 593,366 - MPMX19_05858 0.20 -1.8 593,366 - MPMX19_05858 0.20 +1.2 593,366 - MPMX19_05858 0.20 -0.5 593,366 - MPMX19_05858 0.20 -1.3 593,366 - MPMX19_05858 0.20 -0.6 593,366 - MPMX19_05858 0.20 -1.1 593,366 - MPMX19_05858 0.20 -1.9 593,477 - MPMX19_05858 0.34 +0.2 593,569 + MPMX19_05858 0.46 -1.4 593,569 + MPMX19_05858 0.46 +0.3 593,569 + MPMX19_05858 0.46 -0.7 593,569 + MPMX19_05858 0.46 -1.8 593,569 + MPMX19_05858 0.46 +0.4 593,569 + MPMX19_05858 0.46 -0.6 593,569 + MPMX19_05858 0.46 +0.7 593,570 - MPMX19_05858 0.46 +1.0 593,570 - MPMX19_05858 0.46 -1.3 593,570 - MPMX19_05858 0.46 -0.4 593,570 - MPMX19_05858 0.46 +0.0 593,570 - MPMX19_05858 0.46 -0.8 593,570 - MPMX19_05858 0.46 -0.4 593,643 + MPMX19_05858 0.55 -2.1 593,643 + MPMX19_05858 0.55 -0.0 593,643 + MPMX19_05858 0.55 -0.3 593,643 + MPMX19_05858 0.55 -1.3 593,643 + MPMX19_05858 0.55 -1.0 593,643 + MPMX19_05858 0.55 -2.5 593,643 + MPMX19_05858 0.55 +0.6 593,644 - MPMX19_05858 0.55 +1.0 594,003 + +0.3 594,003 + -0.4 594,003 + -0.3 594,003 + +0.0 594,003 + -0.3 594,003 + -1.0 594,003 + -1.7 594,003 + -1.0 594,003 + +0.6 594,003 + +0.8 594,003 + -0.1 594,003 + -2.0 594,003 + -0.4 594,003 + +0.4 594,003 + -0.8 594,003 + +0.4 594,003 + +0.6 594,003 + -1.0 594,003 + -0.6 594,003 + +0.4 594,003 + -1.6 594,003 + -1.1 594,003 + -0.6 594,003 + +0.4 594,003 + -0.8 594,004 - -0.6 594,004 - -0.3 594,004 - -0.3 594,004 - -1.3 594,004 - +0.6 594,004 - -1.1 594,004 - -1.1 594,004 - +0.0 594,004 - -0.6 594,004 - -1.7 594,004 - -1.9 594,004 - -0.1 594,004 - +0.2 594,004 - -1.6 594,004 - -2.6 594,004 - +1.1 594,004 - -1.0 594,004 - +0.6 594,004 - -1.0 594,017 + -1.0 594,017 + +0.0 594,018 - -0.1 594,018 - -1.8 594,018 - +1.4 594,018 - -1.4 594,018 - -0.6 594,018 - -1.8 594,018 - -0.3 594,053 + -0.6 594,053 + +0.1 594,054 - +0.5 594,164 + MPMX19_05859 0.13 -0.9 594,164 + MPMX19_05859 0.13 -1.1 594,164 + MPMX19_05859 0.13 -1.0 594,164 + MPMX19_05859 0.13 +0.2 594,164 + MPMX19_05859 0.13 -1.4 594,164 + MPMX19_05859 0.13 -1.4 594,164 + MPMX19_05859 0.13 -0.3 594,164 + MPMX19_05859 0.13 -0.1 594,164 + MPMX19_05859 0.13 -1.3 594,164 + MPMX19_05859 0.13 +0.4 594,164 + MPMX19_05859 0.13 -0.7 594,164 + MPMX19_05859 0.13 +0.8 594,164 + MPMX19_05859 0.13 -1.5 594,164 + MPMX19_05859 0.13 -1.9 594,164 + MPMX19_05859 0.13 -2.0 594,165 - MPMX19_05859 0.13 -0.9 594,165 - MPMX19_05859 0.13 -1.4 594,165 - MPMX19_05859 0.13 -1.7 594,165 - MPMX19_05859 0.13 -0.3 594,165 - MPMX19_05859 0.13 -0.2 594,165 - MPMX19_05859 0.13 -1.0 594,165 - MPMX19_05859 0.13 -0.7 594,165 - MPMX19_05859 0.13 -1.7 594,165 - MPMX19_05859 0.13 -1.3 594,476 + MPMX19_05859 0.39 -1.9 594,476 + MPMX19_05859 0.39 +0.5 594,476 + MPMX19_05859 0.39 -1.3 594,477 - MPMX19_05859 0.39 -1.7 594,477 - MPMX19_05859 0.39 -1.1 594,477 - MPMX19_05859 0.39 -0.3 594,477 - MPMX19_05859 0.39 -0.3 594,477 - MPMX19_05859 0.39 -0.3 594,477 - MPMX19_05859 0.39 -1.0 594,477 - MPMX19_05859 0.39 -0.3 594,477 - MPMX19_05859 0.39 -0.8 594,477 - MPMX19_05859 0.39 -1.6 594,477 - MPMX19_05859 0.39 -2.5 595,202 + -0.8 595,202 + -0.9 595,203 - -0.7 595,203 - +0.2 595,203 - -1.1 595,203 - -0.7 595,203 - -0.3 595,289 + -1.4 595,289 + -1.4 595,289 + -1.1 595,289 + -1.5 595,289 + +0.7 595,289 + -1.0 595,290 - +0.0 595,409 + MPMX19_05860 0.20 -0.8 595,409 + MPMX19_05860 0.20 +0.9 595,409 + MPMX19_05860 0.20 +0.9 595,409 + MPMX19_05860 0.20 -1.1 595,410 - MPMX19_05860 0.20 -3.0 595,410 - MPMX19_05860 0.20 -0.9 595,466 + MPMX19_05860 0.27 +0.0 595,769 + MPMX19_05860 0.65 +0.3 595,769 + MPMX19_05860 0.65 +1.4 595,770 - MPMX19_05860 0.65 +0.4 595,805 + MPMX19_05860 0.69 -0.1 595,805 + MPMX19_05860 0.69 +0.0 595,805 + MPMX19_05860 0.69 -1.0 595,805 + MPMX19_05860 0.69 +0.4 595,805 + MPMX19_05860 0.69 -1.0 595,805 + MPMX19_05860 0.69 -0.8 595,805 + MPMX19_05860 0.69 +0.7 595,805 + MPMX19_05860 0.69 -1.1 595,805 + MPMX19_05860 0.69 +0.0 595,805 + MPMX19_05860 0.69 -1.4 595,805 + MPMX19_05860 0.69 -1.7 595,805 + MPMX19_05860 0.69 -1.1 595,805 + MPMX19_05860 0.69 -2.0 595,806 - MPMX19_05860 0.69 -0.1 595,806 - MPMX19_05860 0.69 +0.0 595,806 - MPMX19_05860 0.69 +0.4 595,806 - MPMX19_05860 0.69 -0.5 595,806 - MPMX19_05860 0.69 -0.3 595,806 - MPMX19_05860 0.69 -1.4 595,806 - MPMX19_05860 0.69 -0.8 595,806 - MPMX19_05860 0.69 -0.6 595,806 - MPMX19_05860 0.69 -2.7 595,806 - MPMX19_05860 0.69 -0.4 595,806 - MPMX19_05860 0.69 -0.2 595,806 - MPMX19_05860 0.69 -1.8 596,083 + -0.6 596,083 + -1.0 596,083 + -1.7 596,083 + -2.4 596,083 + -0.8 596,083 + +0.3 596,084 - -0.6 596,084 - +0.0 596,084 - -0.8 596,084 - -1.0 596,084 - +0.0 596,084 - -1.8
Or see this region's nucleotide sequence