Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05858

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05857 and MPMX19_05858 overlap by 1 nucleotidesMPMX19_05858 and MPMX19_05859 are separated by 4 nucleotides MPMX19_05857: MPMX19_05857 - 3-oxoadipate CoA-transferase subunit A, at 592,334 to 593,206 _05857 MPMX19_05858: MPMX19_05858 - 3-oxoadipate CoA-transferase subunit B, at 593,206 to 594,000 _05858 MPMX19_05859: MPMX19_05859 - Beta-ketoadipyl-CoA thiolase, at 594,005 to 595,204 _05859 Position (kb) 593 594 595Strain fitness (log2 ratio) -2 -1 0 1at 592.333 kb on + strandat 592.333 kb on + strandat 592.333 kb on + strandat 592.334 kb on - strandat 592.502 kb on + strand, within MPMX19_05857at 592.502 kb on + strand, within MPMX19_05857at 592.502 kb on + strand, within MPMX19_05857at 592.502 kb on + strand, within MPMX19_05857at 592.502 kb on + strand, within MPMX19_05857at 592.502 kb on + strand, within MPMX19_05857at 592.502 kb on + strand, within MPMX19_05857at 592.502 kb on + strand, within MPMX19_05857at 592.503 kb on - strand, within MPMX19_05857at 592.503 kb on - strand, within MPMX19_05857at 592.503 kb on - strand, within MPMX19_05857at 592.503 kb on - strand, within MPMX19_05857at 592.503 kb on - strand, within MPMX19_05857at 592.664 kb on + strand, within MPMX19_05857at 592.664 kb on + strand, within MPMX19_05857at 592.664 kb on + strand, within MPMX19_05857at 592.664 kb on + strand, within MPMX19_05857at 592.665 kb on - strand, within MPMX19_05857at 592.665 kb on - strand, within MPMX19_05857at 592.665 kb on - strand, within MPMX19_05857at 592.665 kb on - strand, within MPMX19_05857at 592.665 kb on - strand, within MPMX19_05857at 592.665 kb on - strand, within MPMX19_05857at 592.665 kb on - strand, within MPMX19_05857at 592.665 kb on - strand, within MPMX19_05857at 592.665 kb on - strand, within MPMX19_05857at 592.710 kb on - strand, within MPMX19_05857at 592.710 kb on - strand, within MPMX19_05857at 592.710 kb on - strand, within MPMX19_05857at 592.977 kb on - strand, within MPMX19_05857at 593.019 kb on - strand, within MPMX19_05857at 593.019 kb on - strand, within MPMX19_05857at 593.019 kb on - strand, within MPMX19_05857at 593.027 kb on + strand, within MPMX19_05857at 593.027 kb on + strand, within MPMX19_05857at 593.028 kb on - strand, within MPMX19_05857at 593.028 kb on - strand, within MPMX19_05857at 593.028 kb on - strand, within MPMX19_05857at 593.028 kb on - strand, within MPMX19_05857at 593.039 kb on + strand, within MPMX19_05857at 593.039 kb on + strand, within MPMX19_05857at 593.040 kb on - strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.063 kb on + strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.064 kb on - strand, within MPMX19_05857at 593.365 kb on + strand, within MPMX19_05858at 593.365 kb on + strand, within MPMX19_05858at 593.365 kb on + strand, within MPMX19_05858at 593.365 kb on + strand, within MPMX19_05858at 593.366 kb on - strand, within MPMX19_05858at 593.366 kb on - strand, within MPMX19_05858at 593.366 kb on - strand, within MPMX19_05858at 593.366 kb on - strand, within MPMX19_05858at 593.366 kb on - strand, within MPMX19_05858at 593.366 kb on - strand, within MPMX19_05858at 593.366 kb on - strand, within MPMX19_05858at 593.366 kb on - strand, within MPMX19_05858at 593.477 kb on - strand, within MPMX19_05858at 593.569 kb on + strand, within MPMX19_05858at 593.569 kb on + strand, within MPMX19_05858at 593.569 kb on + strand, within MPMX19_05858at 593.569 kb on + strand, within MPMX19_05858at 593.569 kb on + strand, within MPMX19_05858at 593.569 kb on + strand, within MPMX19_05858at 593.569 kb on + strand, within MPMX19_05858at 593.570 kb on - strand, within MPMX19_05858at 593.570 kb on - strand, within MPMX19_05858at 593.570 kb on - strand, within MPMX19_05858at 593.570 kb on - strand, within MPMX19_05858at 593.570 kb on - strand, within MPMX19_05858at 593.570 kb on - strand, within MPMX19_05858at 593.643 kb on + strand, within MPMX19_05858at 593.643 kb on + strand, within MPMX19_05858at 593.643 kb on + strand, within MPMX19_05858at 593.643 kb on + strand, within MPMX19_05858at 593.643 kb on + strand, within MPMX19_05858at 593.643 kb on + strand, within MPMX19_05858at 593.643 kb on + strand, within MPMX19_05858at 593.644 kb on - strand, within MPMX19_05858at 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.003 kb on + strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.004 kb on - strandat 594.017 kb on + strandat 594.017 kb on + strandat 594.018 kb on - strandat 594.018 kb on - strandat 594.018 kb on - strandat 594.018 kb on - strandat 594.018 kb on - strandat 594.018 kb on - strandat 594.018 kb on - strandat 594.053 kb on + strandat 594.053 kb on + strandat 594.054 kb on - strandat 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.164 kb on + strand, within MPMX19_05859at 594.165 kb on - strand, within MPMX19_05859at 594.165 kb on - strand, within MPMX19_05859at 594.165 kb on - strand, within MPMX19_05859at 594.165 kb on - strand, within MPMX19_05859at 594.165 kb on - strand, within MPMX19_05859at 594.165 kb on - strand, within MPMX19_05859at 594.165 kb on - strand, within MPMX19_05859at 594.165 kb on - strand, within MPMX19_05859at 594.165 kb on - strand, within MPMX19_05859at 594.476 kb on + strand, within MPMX19_05859at 594.476 kb on + strand, within MPMX19_05859at 594.476 kb on + strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859at 594.477 kb on - strand, within MPMX19_05859

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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592,333 + -0.1
592,333 + +1.4
592,333 + -0.7
592,334 - +0.3
592,502 + MPMX19_05857 0.19 -0.6
592,502 + MPMX19_05857 0.19 -1.7
592,502 + MPMX19_05857 0.19 +0.2
592,502 + MPMX19_05857 0.19 -0.8
592,502 + MPMX19_05857 0.19 -0.6
592,502 + MPMX19_05857 0.19 -1.1
592,502 + MPMX19_05857 0.19 -1.0
592,502 + MPMX19_05857 0.19 -0.0
592,503 - MPMX19_05857 0.19 +1.0
592,503 - MPMX19_05857 0.19 -0.9
592,503 - MPMX19_05857 0.19 +1.0
592,503 - MPMX19_05857 0.19 -1.3
592,503 - MPMX19_05857 0.19 -0.9
592,664 + MPMX19_05857 0.38 -1.6
592,664 + MPMX19_05857 0.38 -0.2
592,664 + MPMX19_05857 0.38 +1.6
592,664 + MPMX19_05857 0.38 +0.0
592,665 - MPMX19_05857 0.38 -1.0
592,665 - MPMX19_05857 0.38 +0.7
592,665 - MPMX19_05857 0.38 -0.6
592,665 - MPMX19_05857 0.38 -2.2
592,665 - MPMX19_05857 0.38 +0.4
592,665 - MPMX19_05857 0.38 +0.2
592,665 - MPMX19_05857 0.38 -2.0
592,665 - MPMX19_05857 0.38 -0.2
592,665 - MPMX19_05857 0.38 -1.0
592,710 - MPMX19_05857 0.43 -0.8
592,710 - MPMX19_05857 0.43 -1.0
592,710 - MPMX19_05857 0.43 +0.2
592,977 - MPMX19_05857 0.74 -0.9
593,019 - MPMX19_05857 0.78 -1.0
593,019 - MPMX19_05857 0.78 -1.6
593,019 - MPMX19_05857 0.78 +1.0
593,027 + MPMX19_05857 0.79 -0.4
593,027 + MPMX19_05857 0.79 -1.3
593,028 - MPMX19_05857 0.79 -0.1
593,028 - MPMX19_05857 0.79 -0.9
593,028 - MPMX19_05857 0.79 -2.6
593,028 - MPMX19_05857 0.79 -2.1
593,039 + MPMX19_05857 0.81 +0.2
593,039 + MPMX19_05857 0.81 -1.3
593,040 - MPMX19_05857 0.81 -0.3
593,063 + MPMX19_05857 0.84 -0.3
593,063 + MPMX19_05857 0.84 -0.7
593,063 + MPMX19_05857 0.84 +0.3
593,063 + MPMX19_05857 0.84 -0.2
593,063 + MPMX19_05857 0.84 +0.7
593,063 + MPMX19_05857 0.84 -1.0
593,063 + MPMX19_05857 0.84 -0.3
593,063 + MPMX19_05857 0.84 -0.1
593,063 + MPMX19_05857 0.84 -0.7
593,063 + MPMX19_05857 0.84 -0.1
593,063 + MPMX19_05857 0.84 +0.9
593,063 + MPMX19_05857 0.84 -0.3
593,063 + MPMX19_05857 0.84 +0.2
593,063 + MPMX19_05857 0.84 -1.7
593,063 + MPMX19_05857 0.84 -0.8
593,063 + MPMX19_05857 0.84 +0.9
593,063 + MPMX19_05857 0.84 -0.6
593,063 + MPMX19_05857 0.84 -0.4
593,064 - MPMX19_05857 0.84 -0.4
593,064 - MPMX19_05857 0.84 -0.5
593,064 - MPMX19_05857 0.84 -1.3
593,064 - MPMX19_05857 0.84 -0.6
593,064 - MPMX19_05857 0.84 -1.0
593,064 - MPMX19_05857 0.84 -0.4
593,064 - MPMX19_05857 0.84 +0.1
593,064 - MPMX19_05857 0.84 -1.1
593,064 - MPMX19_05857 0.84 -0.0
593,064 - MPMX19_05857 0.84 +0.6
593,064 - MPMX19_05857 0.84 -0.1
593,064 - MPMX19_05857 0.84 +0.4
593,064 - MPMX19_05857 0.84 -1.7
593,064 - MPMX19_05857 0.84 -1.2
593,064 - MPMX19_05857 0.84 +0.3
593,064 - MPMX19_05857 0.84 +0.0
593,064 - MPMX19_05857 0.84 -1.0
593,064 - MPMX19_05857 0.84 -1.0
593,064 - MPMX19_05857 0.84 -0.1
593,064 - MPMX19_05857 0.84 -0.2
593,064 - MPMX19_05857 0.84 +0.4
593,365 + MPMX19_05858 0.20 -2.3
593,365 + MPMX19_05858 0.20 -0.2
593,365 + MPMX19_05858 0.20 +0.6
593,365 + MPMX19_05858 0.20 -0.6
593,366 - MPMX19_05858 0.20 +0.0
593,366 - MPMX19_05858 0.20 -1.8
593,366 - MPMX19_05858 0.20 +1.2
593,366 - MPMX19_05858 0.20 -0.5
593,366 - MPMX19_05858 0.20 -1.3
593,366 - MPMX19_05858 0.20 -0.6
593,366 - MPMX19_05858 0.20 -1.1
593,366 - MPMX19_05858 0.20 -1.9
593,477 - MPMX19_05858 0.34 +0.2
593,569 + MPMX19_05858 0.46 -1.4
593,569 + MPMX19_05858 0.46 +0.3
593,569 + MPMX19_05858 0.46 -0.7
593,569 + MPMX19_05858 0.46 -1.8
593,569 + MPMX19_05858 0.46 +0.4
593,569 + MPMX19_05858 0.46 -0.6
593,569 + MPMX19_05858 0.46 +0.7
593,570 - MPMX19_05858 0.46 +1.0
593,570 - MPMX19_05858 0.46 -1.3
593,570 - MPMX19_05858 0.46 -0.4
593,570 - MPMX19_05858 0.46 +0.0
593,570 - MPMX19_05858 0.46 -0.8
593,570 - MPMX19_05858 0.46 -0.4
593,643 + MPMX19_05858 0.55 -2.1
593,643 + MPMX19_05858 0.55 -0.0
593,643 + MPMX19_05858 0.55 -0.3
593,643 + MPMX19_05858 0.55 -1.3
593,643 + MPMX19_05858 0.55 -1.0
593,643 + MPMX19_05858 0.55 -2.5
593,643 + MPMX19_05858 0.55 +0.6
593,644 - MPMX19_05858 0.55 +1.0
594,003 + +0.3
594,003 + -0.4
594,003 + -0.3
594,003 + +0.0
594,003 + -0.3
594,003 + -1.0
594,003 + -1.7
594,003 + -1.0
594,003 + +0.6
594,003 + +0.8
594,003 + -0.1
594,003 + -2.0
594,003 + -0.4
594,003 + +0.4
594,003 + -0.8
594,003 + +0.4
594,003 + +0.6
594,003 + -1.0
594,003 + -0.6
594,003 + +0.4
594,003 + -1.6
594,003 + -1.1
594,003 + -0.6
594,003 + +0.4
594,003 + -0.8
594,004 - -0.6
594,004 - -0.3
594,004 - -0.3
594,004 - -1.3
594,004 - +0.6
594,004 - -1.1
594,004 - -1.1
594,004 - +0.0
594,004 - -0.6
594,004 - -1.7
594,004 - -1.9
594,004 - -0.1
594,004 - +0.2
594,004 - -1.6
594,004 - -2.6
594,004 - +1.1
594,004 - -1.0
594,004 - +0.6
594,004 - -1.0
594,017 + -1.0
594,017 + +0.0
594,018 - -0.1
594,018 - -1.8
594,018 - +1.4
594,018 - -1.4
594,018 - -0.6
594,018 - -1.8
594,018 - -0.3
594,053 + -0.6
594,053 + +0.1
594,054 - +0.5
594,164 + MPMX19_05859 0.13 -0.9
594,164 + MPMX19_05859 0.13 -1.1
594,164 + MPMX19_05859 0.13 -1.0
594,164 + MPMX19_05859 0.13 +0.2
594,164 + MPMX19_05859 0.13 -1.4
594,164 + MPMX19_05859 0.13 -1.4
594,164 + MPMX19_05859 0.13 -0.3
594,164 + MPMX19_05859 0.13 -0.1
594,164 + MPMX19_05859 0.13 -1.3
594,164 + MPMX19_05859 0.13 +0.4
594,164 + MPMX19_05859 0.13 -0.7
594,164 + MPMX19_05859 0.13 +0.8
594,164 + MPMX19_05859 0.13 -1.5
594,164 + MPMX19_05859 0.13 -1.9
594,164 + MPMX19_05859 0.13 -2.0
594,165 - MPMX19_05859 0.13 -0.9
594,165 - MPMX19_05859 0.13 -1.4
594,165 - MPMX19_05859 0.13 -1.7
594,165 - MPMX19_05859 0.13 -0.3
594,165 - MPMX19_05859 0.13 -0.2
594,165 - MPMX19_05859 0.13 -1.0
594,165 - MPMX19_05859 0.13 -0.7
594,165 - MPMX19_05859 0.13 -1.7
594,165 - MPMX19_05859 0.13 -1.3
594,476 + MPMX19_05859 0.39 -1.9
594,476 + MPMX19_05859 0.39 +0.5
594,476 + MPMX19_05859 0.39 -1.3
594,477 - MPMX19_05859 0.39 -1.7
594,477 - MPMX19_05859 0.39 -1.1
594,477 - MPMX19_05859 0.39 -0.3
594,477 - MPMX19_05859 0.39 -0.3
594,477 - MPMX19_05859 0.39 -0.3
594,477 - MPMX19_05859 0.39 -1.0
594,477 - MPMX19_05859 0.39 -0.3
594,477 - MPMX19_05859 0.39 -0.8
594,477 - MPMX19_05859 0.39 -1.6
594,477 - MPMX19_05859 0.39 -2.5

Or see this region's nucleotide sequence