Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05837

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05836 and MPMX19_05837 are separated by 82 nucleotidesMPMX19_05837 and MPMX19_05838 are separated by 112 nucleotides MPMX19_05836: MPMX19_05836 - Alkyl hydroperoxide reductase subunit F, at 567,016 to 568,806 _05836 MPMX19_05837: MPMX19_05837 - hypothetical protein, at 568,889 to 569,257 _05837 MPMX19_05838: MPMX19_05838 - hypothetical protein, at 569,370 to 570,341 _05838 Position (kb) 568 569 570Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 567.895 kb on + strand, within MPMX19_05836at 567.895 kb on + strand, within MPMX19_05836at 567.895 kb on + strand, within MPMX19_05836at 567.895 kb on + strand, within MPMX19_05836at 567.895 kb on + strand, within MPMX19_05836at 567.895 kb on + strand, within MPMX19_05836at 567.895 kb on + strand, within MPMX19_05836at 567.895 kb on + strand, within MPMX19_05836at 567.895 kb on + strand, within MPMX19_05836at 567.895 kb on + strand, within MPMX19_05836at 567.895 kb on + strand, within MPMX19_05836at 567.896 kb on - strand, within MPMX19_05836at 567.896 kb on - strand, within MPMX19_05836at 567.896 kb on - strand, within MPMX19_05836at 567.896 kb on - strand, within MPMX19_05836at 567.896 kb on - strand, within MPMX19_05836at 568.045 kb on + strand, within MPMX19_05836at 568.045 kb on + strand, within MPMX19_05836at 568.045 kb on + strand, within MPMX19_05836at 568.045 kb on + strand, within MPMX19_05836at 568.045 kb on + strand, within MPMX19_05836at 568.045 kb on + strand, within MPMX19_05836at 568.045 kb on + strand, within MPMX19_05836at 568.045 kb on + strand, within MPMX19_05836at 568.045 kb on + strand, within MPMX19_05836at 568.045 kb on + strand, within MPMX19_05836at 568.046 kb on - strand, within MPMX19_05836at 568.046 kb on - strand, within MPMX19_05836at 568.046 kb on - strand, within MPMX19_05836at 568.046 kb on - strand, within MPMX19_05836at 568.046 kb on - strand, within MPMX19_05836at 568.046 kb on - strand, within MPMX19_05836at 568.216 kb on + strand, within MPMX19_05836at 568.217 kb on - strand, within MPMX19_05836at 568.237 kb on + strand, within MPMX19_05836at 568.237 kb on + strand, within MPMX19_05836at 568.238 kb on - strand, within MPMX19_05836at 568.492 kb on + strand, within MPMX19_05836at 568.492 kb on + strand, within MPMX19_05836at 568.492 kb on + strand, within MPMX19_05836at 568.492 kb on + strand, within MPMX19_05836at 568.492 kb on + strand, within MPMX19_05836at 568.492 kb on + strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 568.493 kb on - strand, within MPMX19_05836at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.076 kb on + strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.077 kb on - strand, within MPMX19_05837at 569.079 kb on + strand, within MPMX19_05837at 569.080 kb on - strand, within MPMX19_05837at 569.080 kb on - strand, within MPMX19_05837at 569.080 kb on - strand, within MPMX19_05837at 569.080 kb on - strand, within MPMX19_05837at 569.166 kb on + strand, within MPMX19_05837at 569.166 kb on + strand, within MPMX19_05837at 569.166 kb on + strand, within MPMX19_05837at 569.166 kb on + strand, within MPMX19_05837at 569.166 kb on + strand, within MPMX19_05837at 569.166 kb on + strand, within MPMX19_05837at 569.167 kb on - strand, within MPMX19_05837at 569.167 kb on - strand, within MPMX19_05837at 569.167 kb on - strand, within MPMX19_05837at 569.371 kb on + strandat 569.372 kb on - strandat 569.404 kb on + strandat 569.404 kb on + strandat 569.404 kb on + strandat 569.404 kb on + strandat 569.404 kb on + strandat 569.404 kb on + strandat 569.405 kb on - strandat 569.405 kb on - strandat 569.405 kb on - strandat 569.405 kb on - strandat 569.405 kb on - strandat 569.405 kb on - strandat 569.405 kb on - strandat 569.405 kb on - strandat 569.405 kb on - strandat 569.551 kb on + strand, within MPMX19_05838at 569.551 kb on + strand, within MPMX19_05838at 569.552 kb on - strand, within MPMX19_05838at 569.552 kb on - strand, within MPMX19_05838at 569.552 kb on - strand, within MPMX19_05838at 569.552 kb on - strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.782 kb on + strand, within MPMX19_05838at 569.783 kb on - strand, within MPMX19_05838at 569.783 kb on - strand, within MPMX19_05838at 569.783 kb on - strand, within MPMX19_05838at 569.783 kb on - strand, within MPMX19_05838at 570.113 kb on - strand, within MPMX19_05838at 570.121 kb on + strand, within MPMX19_05838at 570.121 kb on + strand, within MPMX19_05838at 570.122 kb on - strand, within MPMX19_05838at 570.122 kb on - strand, within MPMX19_05838at 570.122 kb on - strand, within MPMX19_05838at 570.122 kb on - strand, within MPMX19_05838

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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567,895 + MPMX19_05836 0.49 +0.0
567,895 + MPMX19_05836 0.49 -0.1
567,895 + MPMX19_05836 0.49 -0.6
567,895 + MPMX19_05836 0.49 +0.3
567,895 + MPMX19_05836 0.49 -1.7
567,895 + MPMX19_05836 0.49 -1.0
567,895 + MPMX19_05836 0.49 -0.4
567,895 + MPMX19_05836 0.49 -0.2
567,895 + MPMX19_05836 0.49 -0.9
567,895 + MPMX19_05836 0.49 -1.1
567,895 + MPMX19_05836 0.49 -0.3
567,896 - MPMX19_05836 0.49 +0.4
567,896 - MPMX19_05836 0.49 -0.7
567,896 - MPMX19_05836 0.49 +0.2
567,896 - MPMX19_05836 0.49 -2.3
567,896 - MPMX19_05836 0.49 -0.8
568,045 + MPMX19_05836 0.57 -0.0
568,045 + MPMX19_05836 0.57 -2.3
568,045 + MPMX19_05836 0.57 +0.7
568,045 + MPMX19_05836 0.57 +0.8
568,045 + MPMX19_05836 0.57 -0.7
568,045 + MPMX19_05836 0.57 -1.4
568,045 + MPMX19_05836 0.57 -0.9
568,045 + MPMX19_05836 0.57 -1.6
568,045 + MPMX19_05836 0.57 -0.7
568,045 + MPMX19_05836 0.57 -1.0
568,046 - MPMX19_05836 0.58 -1.3
568,046 - MPMX19_05836 0.58 -0.8
568,046 - MPMX19_05836 0.58 -0.6
568,046 - MPMX19_05836 0.58 +0.9
568,046 - MPMX19_05836 0.58 -0.1
568,046 - MPMX19_05836 0.58 -0.1
568,216 + MPMX19_05836 0.67 -0.9
568,217 - MPMX19_05836 0.67 +1.7
568,237 + MPMX19_05836 0.68 -1.6
568,237 + MPMX19_05836 0.68 -2.9
568,238 - MPMX19_05836 0.68 -0.3
568,492 + MPMX19_05836 0.82 -2.0
568,492 + MPMX19_05836 0.82 +0.4
568,492 + MPMX19_05836 0.82 -1.3
568,492 + MPMX19_05836 0.82 -1.8
568,492 + MPMX19_05836 0.82 -0.3
568,492 + MPMX19_05836 0.82 -1.9
568,493 - MPMX19_05836 0.82 -1.2
568,493 - MPMX19_05836 0.82 +0.0
568,493 - MPMX19_05836 0.82 -1.8
568,493 - MPMX19_05836 0.82 -1.8
568,493 - MPMX19_05836 0.82 -2.4
568,493 - MPMX19_05836 0.82 -0.0
568,493 - MPMX19_05836 0.82 +0.0
568,493 - MPMX19_05836 0.82 -0.2
568,493 - MPMX19_05836 0.82 +0.8
568,493 - MPMX19_05836 0.82 -1.1
568,493 - MPMX19_05836 0.82 -1.0
568,493 - MPMX19_05836 0.82 -1.6
568,493 - MPMX19_05836 0.82 -0.6
569,076 + MPMX19_05837 0.51 +0.3
569,076 + MPMX19_05837 0.51 -0.8
569,076 + MPMX19_05837 0.51 +0.7
569,076 + MPMX19_05837 0.51 -0.8
569,076 + MPMX19_05837 0.51 -0.6
569,076 + MPMX19_05837 0.51 -1.0
569,076 + MPMX19_05837 0.51 -0.2
569,076 + MPMX19_05837 0.51 -0.8
569,076 + MPMX19_05837 0.51 -0.4
569,076 + MPMX19_05837 0.51 -0.7
569,076 + MPMX19_05837 0.51 -1.3
569,076 + MPMX19_05837 0.51 +0.6
569,076 + MPMX19_05837 0.51 -0.9
569,076 + MPMX19_05837 0.51 +0.2
569,076 + MPMX19_05837 0.51 -0.6
569,077 - MPMX19_05837 0.51 +0.0
569,077 - MPMX19_05837 0.51 +1.8
569,077 - MPMX19_05837 0.51 -1.5
569,077 - MPMX19_05837 0.51 -0.1
569,077 - MPMX19_05837 0.51 -1.3
569,077 - MPMX19_05837 0.51 -1.3
569,077 - MPMX19_05837 0.51 +0.2
569,077 - MPMX19_05837 0.51 -0.5
569,077 - MPMX19_05837 0.51 -0.6
569,077 - MPMX19_05837 0.51 -0.7
569,077 - MPMX19_05837 0.51 -0.1
569,077 - MPMX19_05837 0.51 +0.2
569,077 - MPMX19_05837 0.51 -0.8
569,077 - MPMX19_05837 0.51 -1.8
569,077 - MPMX19_05837 0.51 +0.4
569,079 + MPMX19_05837 0.51 -1.1
569,080 - MPMX19_05837 0.52 -1.3
569,080 - MPMX19_05837 0.52 +0.7
569,080 - MPMX19_05837 0.52 +0.4
569,080 - MPMX19_05837 0.52 +0.2
569,166 + MPMX19_05837 0.75 +1.0
569,166 + MPMX19_05837 0.75 +0.0
569,166 + MPMX19_05837 0.75 +0.0
569,166 + MPMX19_05837 0.75 -2.1
569,166 + MPMX19_05837 0.75 +0.7
569,166 + MPMX19_05837 0.75 -0.1
569,167 - MPMX19_05837 0.75 -0.6
569,167 - MPMX19_05837 0.75 +0.1
569,167 - MPMX19_05837 0.75 -1.3
569,371 + +0.3
569,372 - -1.7
569,404 + -0.6
569,404 + +0.3
569,404 + +0.0
569,404 + +0.3
569,404 + -2.1
569,404 + -2.5
569,405 - -0.4
569,405 - -0.8
569,405 - +0.2
569,405 - -1.0
569,405 - -1.0
569,405 - -1.1
569,405 - -0.3
569,405 - -1.3
569,405 - +1.1
569,551 + MPMX19_05838 0.19 +1.0
569,551 + MPMX19_05838 0.19 -0.2
569,552 - MPMX19_05838 0.19 -0.3
569,552 - MPMX19_05838 0.19 -1.0
569,552 - MPMX19_05838 0.19 -3.3
569,552 - MPMX19_05838 0.19 -1.2
569,782 + MPMX19_05838 0.42 -1.3
569,782 + MPMX19_05838 0.42 +1.2
569,782 + MPMX19_05838 0.42 -2.6
569,782 + MPMX19_05838 0.42 +0.5
569,782 + MPMX19_05838 0.42 -0.2
569,782 + MPMX19_05838 0.42 +0.2
569,782 + MPMX19_05838 0.42 -1.5
569,782 + MPMX19_05838 0.42 +0.0
569,782 + MPMX19_05838 0.42 -2.8
569,782 + MPMX19_05838 0.42 -0.7
569,782 + MPMX19_05838 0.42 -2.7
569,782 + MPMX19_05838 0.42 -0.6
569,782 + MPMX19_05838 0.42 +0.3
569,783 - MPMX19_05838 0.42 -1.6
569,783 - MPMX19_05838 0.42 -1.4
569,783 - MPMX19_05838 0.42 -2.2
569,783 - MPMX19_05838 0.42 +0.6
570,113 - MPMX19_05838 0.76 -1.1
570,121 + MPMX19_05838 0.77 -0.1
570,121 + MPMX19_05838 0.77 +0.7
570,122 - MPMX19_05838 0.77 -1.6
570,122 - MPMX19_05838 0.77 +0.3
570,122 - MPMX19_05838 0.77 -0.1
570,122 - MPMX19_05838 0.77 -1.1

Or see this region's nucleotide sequence