Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05834

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05833 and MPMX19_05834 are separated by 100 nucleotidesMPMX19_05834 and MPMX19_05835 are separated by 251 nucleotides MPMX19_05833: MPMX19_05833 - Cyclohexadienyl dehydrogenase, at 564,055 to 564,969 _05833 MPMX19_05834: MPMX19_05834 - Hydrogen peroxide-inducible genes activator, at 565,070 to 565,981 _05834 MPMX19_05835: MPMX19_05835 - Alkyl hydroperoxide reductase C, at 566,233 to 566,796 _05835 Position (kb) 565 566Strain fitness (log2 ratio) -2 -1 0 1at 565.602 kb on + strand, within MPMX19_05834at 565.602 kb on + strand, within MPMX19_05834at 565.602 kb on + strand, within MPMX19_05834at 565.602 kb on + strand, within MPMX19_05834at 565.603 kb on - strand, within MPMX19_05834at 565.603 kb on - strand, within MPMX19_05834at 565.947 kb on + strandat 565.947 kb on + strandat 565.948 kb on - strandat 565.948 kb on - strandat 565.989 kb on + strandat 566.055 kb on + strandat 566.055 kb on + strandat 566.055 kb on + strandat 566.056 kb on - strandat 566.146 kb on + strandat 566.146 kb on + strandat 566.146 kb on + strandat 566.146 kb on + strandat 566.146 kb on + strandat 566.146 kb on + strandat 566.147 kb on - strandat 566.147 kb on - strandat 566.179 kb on + strandat 566.256 kb on + strandat 566.257 kb on - strandat 566.257 kb on - strandat 566.278 kb on + strandat 566.279 kb on - strandat 566.404 kb on + strand, within MPMX19_05835at 566.404 kb on + strand, within MPMX19_05835at 566.404 kb on + strand, within MPMX19_05835at 566.404 kb on + strand, within MPMX19_05835at 566.404 kb on + strand, within MPMX19_05835at 566.437 kb on + strand, within MPMX19_05835at 566.437 kb on + strand, within MPMX19_05835at 566.437 kb on + strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.438 kb on - strand, within MPMX19_05835at 566.440 kb on - strand, within MPMX19_05835at 566.512 kb on + strand, within MPMX19_05835at 566.512 kb on + strand, within MPMX19_05835at 566.512 kb on + strand, within MPMX19_05835at 566.512 kb on + strand, within MPMX19_05835at 566.513 kb on - strand, within MPMX19_05835at 566.513 kb on - strand, within MPMX19_05835at 566.513 kb on - strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.701 kb on + strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.702 kb on - strand, within MPMX19_05835at 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.794 kb on + strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.795 kb on - strandat 566.807 kb on + strandat 566.807 kb on + strandat 566.807 kb on + strandat 566.808 kb on - strandat 566.895 kb on + strandat 566.896 kb on - strandat 566.896 kb on - strandat 566.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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565,602 + MPMX19_05834 0.58 +0.0
565,602 + MPMX19_05834 0.58 -0.6
565,602 + MPMX19_05834 0.58 -1.6
565,602 + MPMX19_05834 0.58 -1.8
565,603 - MPMX19_05834 0.58 -1.7
565,603 - MPMX19_05834 0.58 -0.6
565,947 + -0.1
565,947 + -1.1
565,948 - -2.2
565,948 - +0.8
565,989 + -0.7
566,055 + +0.4
566,055 + -1.8
566,055 + -1.4
566,056 - -0.6
566,146 + -0.1
566,146 + +0.9
566,146 + -1.1
566,146 + -1.6
566,146 + -0.7
566,146 + -1.1
566,147 - -0.6
566,147 - -2.1
566,179 + +0.2
566,256 + -1.6
566,257 - -0.8
566,257 - +1.4
566,278 + +0.0
566,279 - -1.7
566,404 + MPMX19_05835 0.30 -2.1
566,404 + MPMX19_05835 0.30 -1.1
566,404 + MPMX19_05835 0.30 -0.4
566,404 + MPMX19_05835 0.30 -1.1
566,404 + MPMX19_05835 0.30 +0.2
566,437 + MPMX19_05835 0.36 +0.6
566,437 + MPMX19_05835 0.36 -0.9
566,437 + MPMX19_05835 0.36 -1.4
566,438 - MPMX19_05835 0.36 -1.3
566,438 - MPMX19_05835 0.36 -0.9
566,438 - MPMX19_05835 0.36 +0.4
566,438 - MPMX19_05835 0.36 +1.5
566,438 - MPMX19_05835 0.36 -0.4
566,438 - MPMX19_05835 0.36 -1.3
566,438 - MPMX19_05835 0.36 -1.8
566,440 - MPMX19_05835 0.37 -0.3
566,512 + MPMX19_05835 0.49 -1.0
566,512 + MPMX19_05835 0.49 -0.3
566,512 + MPMX19_05835 0.49 +0.7
566,512 + MPMX19_05835 0.49 -0.8
566,513 - MPMX19_05835 0.50 +1.0
566,513 - MPMX19_05835 0.50 +0.2
566,513 - MPMX19_05835 0.50 -1.3
566,701 + MPMX19_05835 0.83 -1.0
566,701 + MPMX19_05835 0.83 -1.7
566,701 + MPMX19_05835 0.83 +0.1
566,701 + MPMX19_05835 0.83 -0.4
566,701 + MPMX19_05835 0.83 -1.1
566,701 + MPMX19_05835 0.83 -2.5
566,701 + MPMX19_05835 0.83 -0.8
566,701 + MPMX19_05835 0.83 -1.4
566,701 + MPMX19_05835 0.83 -1.1
566,702 - MPMX19_05835 0.83 -1.6
566,702 - MPMX19_05835 0.83 +0.0
566,702 - MPMX19_05835 0.83 +0.2
566,702 - MPMX19_05835 0.83 -0.1
566,702 - MPMX19_05835 0.83 -2.6
566,702 - MPMX19_05835 0.83 -0.7
566,702 - MPMX19_05835 0.83 +0.2
566,794 + -1.6
566,794 + -2.4
566,794 + -0.8
566,794 + -0.9
566,794 + +1.0
566,794 + -0.6
566,794 + +0.3
566,794 + +0.9
566,794 + -2.1
566,794 + +0.0
566,794 + -0.1
566,794 + -1.0
566,795 - +0.7
566,795 - -1.1
566,795 - -0.3
566,795 - -2.7
566,795 - -2.5
566,795 - +0.3
566,795 - +0.0
566,795 - -0.8
566,807 + +0.5
566,807 + -1.1
566,807 + +0.6
566,808 - -2.6
566,895 + +0.0
566,896 - -2.2
566,896 - -1.4
566,933 - -0.8

Or see this region's nucleotide sequence