Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05807 and MPMX19_05808 are separated by 41 nucleotides MPMX19_05808 and MPMX19_05809 are separated by 17 nucleotides
MPMX19_05807: MPMX19_05807 - N-carbamoyl-L-amino-acid hydrolase, at 532,801 to 534,069
_05807
MPMX19_05808: MPMX19_05808 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreA, at 534,111 to 535,394
_05808
MPMX19_05809: MPMX19_05809 - NAD-dependent dihydropyrimidine dehydrogenase subunit PreT, at 535,412 to 536,722
_05809
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 533.294 kb on + strand, within MPMX19_05807 at 533.294 kb on + strand, within MPMX19_05807 at 533.294 kb on + strand, within MPMX19_05807 at 533.294 kb on + strand, within MPMX19_05807 at 533.294 kb on + strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.295 kb on - strand, within MPMX19_05807 at 533.414 kb on + strand, within MPMX19_05807 at 533.414 kb on + strand, within MPMX19_05807 at 533.414 kb on + strand, within MPMX19_05807 at 533.414 kb on + strand, within MPMX19_05807 at 533.414 kb on + strand, within MPMX19_05807 at 533.415 kb on - strand, within MPMX19_05807 at 533.415 kb on - strand, within MPMX19_05807 at 533.415 kb on - strand, within MPMX19_05807 at 533.504 kb on + strand, within MPMX19_05807 at 533.504 kb on + strand, within MPMX19_05807 at 533.504 kb on + strand, within MPMX19_05807 at 533.505 kb on - strand, within MPMX19_05807 at 533.546 kb on + strand, within MPMX19_05807 at 533.546 kb on + strand, within MPMX19_05807 at 533.547 kb on - strand, within MPMX19_05807 at 533.609 kb on + strand, within MPMX19_05807 at 533.609 kb on + strand, within MPMX19_05807 at 533.610 kb on - strand, within MPMX19_05807 at 533.610 kb on - strand, within MPMX19_05807 at 533.610 kb on - strand, within MPMX19_05807 at 533.610 kb on - strand, within MPMX19_05807 at 533.610 kb on - strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.720 kb on + strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.721 kb on - strand, within MPMX19_05807 at 533.771 kb on + strand, within MPMX19_05807 at 533.771 kb on + strand, within MPMX19_05807 at 533.772 kb on - strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.783 kb on + strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 533.784 kb on - strand, within MPMX19_05807 at 534.096 kb on + strand at 534.097 kb on - strand at 534.097 kb on - strand at 534.097 kb on - strand at 534.112 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.169 kb on + strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.170 kb on - strand at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.526 kb on + strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.527 kb on - strand, within MPMX19_05808 at 534.703 kb on + strand, within MPMX19_05808 at 534.703 kb on + strand, within MPMX19_05808 at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.309 kb on + strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.310 kb on - strand at 535.539 kb on + strand at 535.539 kb on + strand at 535.540 kb on - strand at 535.540 kb on - strand at 535.818 kb on + strand, within MPMX19_05809 at 535.818 kb on + strand, within MPMX19_05809 at 535.819 kb on - strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.175 kb on + strand, within MPMX19_05809 at 536.176 kb on - strand, within MPMX19_05809 at 536.176 kb on - strand, within MPMX19_05809 at 536.190 kb on + strand, within MPMX19_05809 at 536.190 kb on + strand, within MPMX19_05809 at 536.191 kb on - strand, within MPMX19_05809 at 536.191 kb on - strand, within MPMX19_05809
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 533,294 + MPMX19_05807 0.39 -0.6 533,294 + MPMX19_05807 0.39 -2.1 533,294 + MPMX19_05807 0.39 -2.3 533,294 + MPMX19_05807 0.39 -0.6 533,294 + MPMX19_05807 0.39 -1.1 533,295 - MPMX19_05807 0.39 -0.6 533,295 - MPMX19_05807 0.39 -2.1 533,295 - MPMX19_05807 0.39 -1.1 533,295 - MPMX19_05807 0.39 -1.4 533,295 - MPMX19_05807 0.39 -0.1 533,295 - MPMX19_05807 0.39 +0.2 533,414 + MPMX19_05807 0.48 +0.2 533,414 + MPMX19_05807 0.48 -0.8 533,414 + MPMX19_05807 0.48 -0.8 533,414 + MPMX19_05807 0.48 -1.7 533,414 + MPMX19_05807 0.48 +1.6 533,415 - MPMX19_05807 0.48 +0.5 533,415 - MPMX19_05807 0.48 +0.7 533,415 - MPMX19_05807 0.48 -2.6 533,504 + MPMX19_05807 0.55 -1.6 533,504 + MPMX19_05807 0.55 -1.2 533,504 + MPMX19_05807 0.55 -2.1 533,505 - MPMX19_05807 0.55 -0.3 533,546 + MPMX19_05807 0.59 +0.0 533,546 + MPMX19_05807 0.59 -0.2 533,547 - MPMX19_05807 0.59 -0.8 533,609 + MPMX19_05807 0.64 +0.6 533,609 + MPMX19_05807 0.64 +0.0 533,610 - MPMX19_05807 0.64 +0.0 533,610 - MPMX19_05807 0.64 +0.2 533,610 - MPMX19_05807 0.64 +0.4 533,610 - MPMX19_05807 0.64 -1.9 533,610 - MPMX19_05807 0.64 -0.8 533,720 + MPMX19_05807 0.72 -1.7 533,720 + MPMX19_05807 0.72 +0.9 533,720 + MPMX19_05807 0.72 -0.0 533,720 + MPMX19_05807 0.72 -0.6 533,720 + MPMX19_05807 0.72 -0.3 533,720 + MPMX19_05807 0.72 -0.5 533,720 + MPMX19_05807 0.72 -3.3 533,720 + MPMX19_05807 0.72 +0.8 533,720 + MPMX19_05807 0.72 -0.7 533,720 + MPMX19_05807 0.72 +0.2 533,720 + MPMX19_05807 0.72 -0.3 533,720 + MPMX19_05807 0.72 -0.0 533,720 + MPMX19_05807 0.72 -1.8 533,720 + MPMX19_05807 0.72 +1.2 533,720 + MPMX19_05807 0.72 +1.2 533,720 + MPMX19_05807 0.72 +0.4 533,720 + MPMX19_05807 0.72 -0.3 533,721 - MPMX19_05807 0.72 -1.1 533,721 - MPMX19_05807 0.72 -0.4 533,721 - MPMX19_05807 0.72 -0.4 533,721 - MPMX19_05807 0.72 -1.6 533,721 - MPMX19_05807 0.72 +0.7 533,721 - MPMX19_05807 0.72 +0.0 533,721 - MPMX19_05807 0.72 -0.6 533,721 - MPMX19_05807 0.72 -0.8 533,721 - MPMX19_05807 0.72 -1.1 533,721 - MPMX19_05807 0.72 -0.8 533,721 - MPMX19_05807 0.72 -0.4 533,721 - MPMX19_05807 0.72 -0.4 533,721 - MPMX19_05807 0.72 -0.1 533,721 - MPMX19_05807 0.72 +0.2 533,721 - MPMX19_05807 0.72 +0.4 533,721 - MPMX19_05807 0.72 -1.6 533,721 - MPMX19_05807 0.72 -0.4 533,721 - MPMX19_05807 0.72 -1.8 533,721 - MPMX19_05807 0.72 +0.4 533,721 - MPMX19_05807 0.72 -2.0 533,771 + MPMX19_05807 0.76 +0.3 533,771 + MPMX19_05807 0.76 -0.8 533,772 - MPMX19_05807 0.77 -1.0 533,783 + MPMX19_05807 0.77 -0.3 533,783 + MPMX19_05807 0.77 -1.7 533,783 + MPMX19_05807 0.77 -0.4 533,783 + MPMX19_05807 0.77 +0.1 533,783 + MPMX19_05807 0.77 +0.2 533,783 + MPMX19_05807 0.77 -0.2 533,783 + MPMX19_05807 0.77 -1.4 533,783 + MPMX19_05807 0.77 -0.0 533,783 + MPMX19_05807 0.77 -0.1 533,784 - MPMX19_05807 0.77 -0.2 533,784 - MPMX19_05807 0.77 -0.2 533,784 - MPMX19_05807 0.77 +0.0 533,784 - MPMX19_05807 0.77 -1.2 533,784 - MPMX19_05807 0.77 +1.2 533,784 - MPMX19_05807 0.77 -2.3 533,784 - MPMX19_05807 0.77 +0.6 533,784 - MPMX19_05807 0.77 -0.1 533,784 - MPMX19_05807 0.77 -2.6 533,784 - MPMX19_05807 0.77 +0.3 534,096 + +0.3 534,097 - +0.6 534,097 - -0.2 534,097 - -0.9 534,112 + -0.3 534,169 + -1.3 534,169 + -0.6 534,169 + -1.7 534,169 + +0.2 534,169 + -0.4 534,169 + +0.2 534,169 + -0.4 534,169 + +0.7 534,169 + +0.2 534,169 + +1.6 534,169 + -0.7 534,169 + +0.2 534,170 - +0.3 534,170 - -0.8 534,170 - -0.9 534,170 - +0.7 534,170 - -1.3 534,170 - +0.5 534,170 - -1.8 534,526 + MPMX19_05808 0.32 -1.0 534,526 + MPMX19_05808 0.32 -1.9 534,526 + MPMX19_05808 0.32 -1.5 534,526 + MPMX19_05808 0.32 +0.3 534,526 + MPMX19_05808 0.32 -0.6 534,526 + MPMX19_05808 0.32 -1.1 534,526 + MPMX19_05808 0.32 -1.3 534,527 - MPMX19_05808 0.32 +1.0 534,527 - MPMX19_05808 0.32 +0.4 534,527 - MPMX19_05808 0.32 -1.4 534,527 - MPMX19_05808 0.32 -1.3 534,527 - MPMX19_05808 0.32 -1.0 534,527 - MPMX19_05808 0.32 -0.3 534,527 - MPMX19_05808 0.32 -0.5 534,527 - MPMX19_05808 0.32 -0.9 534,527 - MPMX19_05808 0.32 -1.4 534,527 - MPMX19_05808 0.32 -1.0 534,527 - MPMX19_05808 0.32 +0.4 534,527 - MPMX19_05808 0.32 -0.1 534,527 - MPMX19_05808 0.32 -1.1 534,703 + MPMX19_05808 0.46 +0.2 534,703 + MPMX19_05808 0.46 -0.6 535,309 + -0.1 535,309 + -1.1 535,309 + +0.5 535,309 + -1.0 535,309 + -0.1 535,309 + -1.1 535,309 + -1.1 535,309 + -0.3 535,309 + -0.4 535,309 + -0.1 535,309 + -0.3 535,309 + +2.0 535,310 - -1.4 535,310 - +0.3 535,310 - +0.0 535,310 - +1.6 535,310 - -0.8 535,310 - -0.9 535,310 - -0.1 535,310 - -0.1 535,310 - +1.2 535,310 - -2.2 535,310 - -0.1 535,539 + -0.6 535,539 + -0.3 535,540 - -1.1 535,540 - -1.1 535,818 + MPMX19_05809 0.31 -0.1 535,818 + MPMX19_05809 0.31 +0.0 535,819 - MPMX19_05809 0.31 -1.1 536,175 + MPMX19_05809 0.58 -0.3 536,175 + MPMX19_05809 0.58 +0.2 536,175 + MPMX19_05809 0.58 -2.1 536,175 + MPMX19_05809 0.58 -0.9 536,175 + MPMX19_05809 0.58 -1.5 536,175 + MPMX19_05809 0.58 -1.1 536,176 - MPMX19_05809 0.58 +0.4 536,176 - MPMX19_05809 0.58 -1.0 536,190 + MPMX19_05809 0.59 -0.7 536,190 + MPMX19_05809 0.59 +0.8 536,191 - MPMX19_05809 0.59 -1.1 536,191 - MPMX19_05809 0.59 -1.6
Or see this region's nucleotide sequence