Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05770

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05769 and MPMX19_05770 are separated by 470 nucleotidesMPMX19_05770 and MPMX19_05771 are separated by 26 nucleotidesMPMX19_05771 and MPMX19_05772 overlap by 1 nucleotides MPMX19_05769: MPMX19_05769 - hypothetical protein, at 492,436 to 493,035 _05769 MPMX19_05770: MPMX19_05770 - 1,2-phenylacetyl-CoA epoxidase, subunit A, at 493,506 to 494,519 _05770 MPMX19_05771: MPMX19_05771 - 1,2-phenylacetyl-CoA epoxidase, subunit B, at 494,546 to 494,833 _05771 MPMX19_05772: MPMX19_05772 - 1,2-phenylacetyl-CoA epoxidase, subunit C, at 494,833 to 495,597 _05772 Position (kb) 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.529 kb on + strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.530 kb on - strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.973 kb on + strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 492.974 kb on - strand, within MPMX19_05769at 493.226 kb on + strandat 493.227 kb on - strandat 493.452 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.509 kb on + strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.510 kb on - strandat 493.812 kb on + strand, within MPMX19_05770at 493.812 kb on + strand, within MPMX19_05770at 493.812 kb on + strand, within MPMX19_05770at 493.812 kb on + strand, within MPMX19_05770at 493.812 kb on + strand, within MPMX19_05770at 493.812 kb on + strand, within MPMX19_05770at 493.813 kb on - strand, within MPMX19_05770at 493.813 kb on - strand, within MPMX19_05770at 493.813 kb on - strand, within MPMX19_05770at 493.813 kb on - strand, within MPMX19_05770at 493.813 kb on - strand, within MPMX19_05770at 493.813 kb on - strand, within MPMX19_05770at 493.813 kb on - strand, within MPMX19_05770at 493.813 kb on - strand, within MPMX19_05770at 493.813 kb on - strand, within MPMX19_05770at 493.818 kb on + strand, within MPMX19_05770at 493.818 kb on + strand, within MPMX19_05770at 493.819 kb on - strand, within MPMX19_05770at 493.819 kb on - strand, within MPMX19_05770at 493.819 kb on - strand, within MPMX19_05770at 493.890 kb on + strand, within MPMX19_05770at 493.890 kb on + strand, within MPMX19_05770at 493.890 kb on + strand, within MPMX19_05770at 493.891 kb on - strand, within MPMX19_05770at 493.908 kb on + strand, within MPMX19_05770at 493.908 kb on + strand, within MPMX19_05770at 493.908 kb on + strand, within MPMX19_05770at 493.909 kb on - strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.001 kb on + strand, within MPMX19_05770at 494.002 kb on - strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.010 kb on + strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.011 kb on - strand, within MPMX19_05770at 494.067 kb on + strand, within MPMX19_05770at 494.067 kb on + strand, within MPMX19_05770at 494.067 kb on + strand, within MPMX19_05770at 494.068 kb on - strand, within MPMX19_05770at 494.340 kb on + strand, within MPMX19_05770at 494.341 kb on - strand, within MPMX19_05770at 494.341 kb on - strand, within MPMX19_05770at 494.341 kb on - strand, within MPMX19_05770at 494.341 kb on - strand, within MPMX19_05770at 494.545 kb on + strandat 494.545 kb on + strandat 494.545 kb on + strandat 494.554 kb on + strandat 494.554 kb on + strandat 494.555 kb on - strandat 494.555 kb on - strandat 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.672 kb on + strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.673 kb on - strand, within MPMX19_05771at 494.674 kb on + strand, within MPMX19_05771at 494.675 kb on - strand, within MPMX19_05771at 494.783 kb on + strand, within MPMX19_05771at 494.784 kb on - strand, within MPMX19_05771at 494.784 kb on - strand, within MPMX19_05771at 494.784 kb on - strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.801 kb on + strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.802 kb on - strand, within MPMX19_05771at 494.827 kb on + strandat 494.827 kb on + strandat 494.827 kb on + strandat 494.827 kb on + strandat 494.827 kb on + strandat 494.827 kb on + strandat 494.828 kb on - strandat 494.828 kb on - strandat 494.828 kb on - strandat 494.828 kb on - strandat 494.828 kb on - strandat 494.866 kb on + strandat 494.867 kb on - strandat 495.010 kb on + strand, within MPMX19_05772at 495.010 kb on + strand, within MPMX19_05772at 495.010 kb on + strand, within MPMX19_05772at 495.010 kb on + strand, within MPMX19_05772at 495.010 kb on + strand, within MPMX19_05772at 495.010 kb on + strand, within MPMX19_05772at 495.011 kb on - strand, within MPMX19_05772at 495.011 kb on - strand, within MPMX19_05772at 495.011 kb on - strand, within MPMX19_05772at 495.011 kb on - strand, within MPMX19_05772at 495.011 kb on - strand, within MPMX19_05772at 495.172 kb on + strand, within MPMX19_05772at 495.172 kb on + strand, within MPMX19_05772at 495.172 kb on + strand, within MPMX19_05772at 495.172 kb on + strand, within MPMX19_05772at 495.173 kb on - strand, within MPMX19_05772at 495.173 kb on - strand, within MPMX19_05772at 495.244 kb on + strand, within MPMX19_05772at 495.244 kb on + strand, within MPMX19_05772at 495.244 kb on + strand, within MPMX19_05772at 495.245 kb on - strand, within MPMX19_05772at 495.245 kb on - strand, within MPMX19_05772at 495.245 kb on - strand, within MPMX19_05772at 495.343 kb on + strand, within MPMX19_05772at 495.343 kb on + strand, within MPMX19_05772at 495.344 kb on - strand, within MPMX19_05772at 495.344 kb on - strand, within MPMX19_05772

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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492,529 + MPMX19_05769 0.15 -0.4
492,529 + MPMX19_05769 0.15 -0.3
492,529 + MPMX19_05769 0.15 +0.4
492,529 + MPMX19_05769 0.15 +0.4
492,529 + MPMX19_05769 0.15 -0.2
492,529 + MPMX19_05769 0.15 -0.7
492,529 + MPMX19_05769 0.15 -1.6
492,529 + MPMX19_05769 0.15 -0.8
492,529 + MPMX19_05769 0.15 -1.1
492,529 + MPMX19_05769 0.15 +0.4
492,529 + MPMX19_05769 0.15 -1.5
492,529 + MPMX19_05769 0.15 -1.7
492,530 - MPMX19_05769 0.16 -1.7
492,530 - MPMX19_05769 0.16 +0.4
492,530 - MPMX19_05769 0.16 -2.8
492,530 - MPMX19_05769 0.16 +0.0
492,530 - MPMX19_05769 0.16 -1.0
492,530 - MPMX19_05769 0.16 -0.1
492,530 - MPMX19_05769 0.16 -0.1
492,530 - MPMX19_05769 0.16 -0.8
492,530 - MPMX19_05769 0.16 -2.8
492,530 - MPMX19_05769 0.16 -2.4
492,530 - MPMX19_05769 0.16 -0.6
492,530 - MPMX19_05769 0.16 +0.0
492,973 + MPMX19_05769 0.90 -1.1
492,973 + MPMX19_05769 0.90 +0.2
492,973 + MPMX19_05769 0.90 +0.0
492,973 + MPMX19_05769 0.90 -1.3
492,973 + MPMX19_05769 0.90 -0.5
492,973 + MPMX19_05769 0.90 -0.1
492,973 + MPMX19_05769 0.90 +0.4
492,973 + MPMX19_05769 0.90 -0.2
492,973 + MPMX19_05769 0.90 +0.1
492,973 + MPMX19_05769 0.90 -1.9
492,973 + MPMX19_05769 0.90 +0.2
492,973 + MPMX19_05769 0.90 -1.0
492,973 + MPMX19_05769 0.90 -1.9
492,973 + MPMX19_05769 0.90 +0.6
492,973 + MPMX19_05769 0.90 -0.4
492,973 + MPMX19_05769 0.90 -1.7
492,973 + MPMX19_05769 0.90 -1.1
492,974 - MPMX19_05769 0.90 -1.3
492,974 - MPMX19_05769 0.90 -1.6
492,974 - MPMX19_05769 0.90 +1.7
492,974 - MPMX19_05769 0.90 +0.6
492,974 - MPMX19_05769 0.90 +0.2
492,974 - MPMX19_05769 0.90 +0.8
492,974 - MPMX19_05769 0.90 -0.4
492,974 - MPMX19_05769 0.90 +0.1
492,974 - MPMX19_05769 0.90 -0.3
492,974 - MPMX19_05769 0.90 -1.0
492,974 - MPMX19_05769 0.90 -0.4
492,974 - MPMX19_05769 0.90 -2.3
492,974 - MPMX19_05769 0.90 -2.2
493,226 + -0.8
493,227 - -0.0
493,452 + -0.6
493,509 + -0.2
493,509 + -1.4
493,509 + -2.1
493,509 + -1.0
493,509 + -0.6
493,509 + -0.9
493,509 + -2.4
493,509 + -3.5
493,509 + -1.7
493,509 + -0.3
493,509 + -1.0
493,509 + +0.0
493,509 + +0.0
493,509 + -0.2
493,510 - +1.0
493,510 - -0.1
493,510 - -1.2
493,510 - -0.8
493,510 - -2.3
493,510 - -1.7
493,510 - -2.7
493,510 - +0.2
493,510 - +1.0
493,510 - -1.1
493,510 - -2.2
493,510 - +1.3
493,510 - -1.0
493,812 + MPMX19_05770 0.30 -2.6
493,812 + MPMX19_05770 0.30 -1.1
493,812 + MPMX19_05770 0.30 -0.7
493,812 + MPMX19_05770 0.30 -1.0
493,812 + MPMX19_05770 0.30 -1.7
493,812 + MPMX19_05770 0.30 -1.2
493,813 - MPMX19_05770 0.30 -0.2
493,813 - MPMX19_05770 0.30 -0.6
493,813 - MPMX19_05770 0.30 +0.7
493,813 - MPMX19_05770 0.30 -0.1
493,813 - MPMX19_05770 0.30 -0.7
493,813 - MPMX19_05770 0.30 -2.0
493,813 - MPMX19_05770 0.30 -0.7
493,813 - MPMX19_05770 0.30 -2.1
493,813 - MPMX19_05770 0.30 -1.4
493,818 + MPMX19_05770 0.31 +0.3
493,818 + MPMX19_05770 0.31 -0.7
493,819 - MPMX19_05770 0.31 +0.8
493,819 - MPMX19_05770 0.31 -0.8
493,819 - MPMX19_05770 0.31 -0.9
493,890 + MPMX19_05770 0.38 -0.4
493,890 + MPMX19_05770 0.38 -1.0
493,890 + MPMX19_05770 0.38 -0.1
493,891 - MPMX19_05770 0.38 +0.2
493,908 + MPMX19_05770 0.40 -1.9
493,908 + MPMX19_05770 0.40 +0.9
493,908 + MPMX19_05770 0.40 -1.0
493,909 - MPMX19_05770 0.40 -1.9
494,001 + MPMX19_05770 0.49 -0.2
494,001 + MPMX19_05770 0.49 -0.4
494,001 + MPMX19_05770 0.49 -1.2
494,001 + MPMX19_05770 0.49 +0.2
494,001 + MPMX19_05770 0.49 -0.3
494,001 + MPMX19_05770 0.49 +0.2
494,002 - MPMX19_05770 0.49 -0.3
494,010 + MPMX19_05770 0.50 -0.3
494,010 + MPMX19_05770 0.50 -0.1
494,010 + MPMX19_05770 0.50 -1.1
494,010 + MPMX19_05770 0.50 -1.1
494,010 + MPMX19_05770 0.50 +0.9
494,010 + MPMX19_05770 0.50 -1.8
494,011 - MPMX19_05770 0.50 +0.0
494,011 - MPMX19_05770 0.50 -1.4
494,011 - MPMX19_05770 0.50 +0.2
494,011 - MPMX19_05770 0.50 -0.9
494,011 - MPMX19_05770 0.50 -0.5
494,011 - MPMX19_05770 0.50 -0.5
494,011 - MPMX19_05770 0.50 -0.4
494,011 - MPMX19_05770 0.50 -0.2
494,011 - MPMX19_05770 0.50 -1.6
494,067 + MPMX19_05770 0.55 -0.4
494,067 + MPMX19_05770 0.55 -1.3
494,067 + MPMX19_05770 0.55 +0.3
494,068 - MPMX19_05770 0.55 +0.0
494,340 + MPMX19_05770 0.82 +0.7
494,341 - MPMX19_05770 0.82 -0.4
494,341 - MPMX19_05770 0.82 -1.2
494,341 - MPMX19_05770 0.82 -0.6
494,341 - MPMX19_05770 0.82 +0.3
494,545 + +0.2
494,545 + +1.7
494,545 + -0.7
494,554 + -0.8
494,554 + -0.7
494,555 - -1.8
494,555 - -1.9
494,672 + MPMX19_05771 0.44 -0.0
494,672 + MPMX19_05771 0.44 -0.1
494,672 + MPMX19_05771 0.44 -0.7
494,672 + MPMX19_05771 0.44 +0.4
494,672 + MPMX19_05771 0.44 -1.4
494,672 + MPMX19_05771 0.44 -1.5
494,672 + MPMX19_05771 0.44 +0.4
494,673 - MPMX19_05771 0.44 -0.1
494,673 - MPMX19_05771 0.44 -1.0
494,673 - MPMX19_05771 0.44 -1.1
494,673 - MPMX19_05771 0.44 -0.8
494,673 - MPMX19_05771 0.44 +0.3
494,673 - MPMX19_05771 0.44 -0.6
494,673 - MPMX19_05771 0.44 +0.1
494,673 - MPMX19_05771 0.44 +0.8
494,673 - MPMX19_05771 0.44 -0.3
494,673 - MPMX19_05771 0.44 +0.2
494,674 + MPMX19_05771 0.44 -2.3
494,675 - MPMX19_05771 0.45 -0.8
494,783 + MPMX19_05771 0.82 +0.0
494,784 - MPMX19_05771 0.83 -0.6
494,784 - MPMX19_05771 0.83 +0.2
494,784 - MPMX19_05771 0.83 -0.1
494,801 + MPMX19_05771 0.89 +1.4
494,801 + MPMX19_05771 0.89 -0.4
494,801 + MPMX19_05771 0.89 -1.8
494,801 + MPMX19_05771 0.89 +0.4
494,801 + MPMX19_05771 0.89 -0.8
494,801 + MPMX19_05771 0.89 +0.0
494,801 + MPMX19_05771 0.89 -0.8
494,801 + MPMX19_05771 0.89 -0.3
494,801 + MPMX19_05771 0.89 -0.7
494,801 + MPMX19_05771 0.89 +1.2
494,801 + MPMX19_05771 0.89 -2.1
494,801 + MPMX19_05771 0.89 -0.2
494,801 + MPMX19_05771 0.89 -1.4
494,801 + MPMX19_05771 0.89 +0.4
494,801 + MPMX19_05771 0.89 +0.2
494,802 - MPMX19_05771 0.89 -0.1
494,802 - MPMX19_05771 0.89 -0.5
494,802 - MPMX19_05771 0.89 -0.3
494,802 - MPMX19_05771 0.89 -0.3
494,802 - MPMX19_05771 0.89 -0.5
494,802 - MPMX19_05771 0.89 -0.8
494,827 + -1.6
494,827 + -1.3
494,827 + -0.5
494,827 + +0.2
494,827 + -0.6
494,827 + -0.1
494,828 - -1.4
494,828 - -0.8
494,828 - +0.3
494,828 - +0.0
494,828 - +0.0
494,866 + -0.6
494,867 - -1.1
495,010 + MPMX19_05772 0.23 +1.0
495,010 + MPMX19_05772 0.23 +0.4
495,010 + MPMX19_05772 0.23 +0.2
495,010 + MPMX19_05772 0.23 -1.2
495,010 + MPMX19_05772 0.23 +0.9
495,010 + MPMX19_05772 0.23 -2.3
495,011 - MPMX19_05772 0.23 -0.7
495,011 - MPMX19_05772 0.23 -0.6
495,011 - MPMX19_05772 0.23 -0.6
495,011 - MPMX19_05772 0.23 -0.6
495,011 - MPMX19_05772 0.23 +0.5
495,172 + MPMX19_05772 0.44 +0.8
495,172 + MPMX19_05772 0.44 +0.0
495,172 + MPMX19_05772 0.44 +0.2
495,172 + MPMX19_05772 0.44 -2.8
495,173 - MPMX19_05772 0.44 -0.7
495,173 - MPMX19_05772 0.44 -1.2
495,244 + MPMX19_05772 0.54 -0.1
495,244 + MPMX19_05772 0.54 -1.3
495,244 + MPMX19_05772 0.54 -1.7
495,245 - MPMX19_05772 0.54 -1.6
495,245 - MPMX19_05772 0.54 -1.9
495,245 - MPMX19_05772 0.54 -1.2
495,343 + MPMX19_05772 0.67 +0.0
495,343 + MPMX19_05772 0.67 -1.1
495,344 - MPMX19_05772 0.67 -0.2
495,344 - MPMX19_05772 0.67 -0.6

Or see this region's nucleotide sequence