Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05757 and MPMX19_05758 are separated by 125 nucleotides MPMX19_05758 and MPMX19_05759 are separated by 699 nucleotides MPMX19_05759 and MPMX19_05760 are separated by 40 nucleotides MPMX19_05760 and MPMX19_05761 are separated by 381 nucleotides
MPMX19_05757: MPMX19_05757 - DNA polymerase III subunit alpha, at 478,552 to 482,043
_05757
MPMX19_05758: MPMX19_05758 - tRNA-Thr, at 482,169 to 482,241
_05758
MPMX19_05759: MPMX19_05759 - hypothetical protein, at 482,941 to 483,900
_05759
MPMX19_05760: MPMX19_05760 - hypothetical protein, at 483,941 to 484,498
_05760
MPMX19_05761: MPMX19_05761 - Ribosomal protein S12 methylthiotransferase RimO, at 484,880 to 486,199
_05761
Position (kb) 482
483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 482.129 kb on + strand at 482.129 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.463 kb on - strand at 482.463 kb on - strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.678 kb on + strand at 482.679 kb on - strand at 482.679 kb on - strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.702 kb on - strand at 482.702 kb on - strand at 482.975 kb on + strand at 482.976 kb on - strand at 482.976 kb on - strand at 483.046 kb on + strand, within MPMX19_05759 at 483.046 kb on + strand, within MPMX19_05759 at 483.046 kb on + strand, within MPMX19_05759 at 483.046 kb on + strand, within MPMX19_05759 at 483.047 kb on - strand, within MPMX19_05759 at 483.047 kb on - strand, within MPMX19_05759 at 483.047 kb on - strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.628 kb on + strand, within MPMX19_05759 at 483.628 kb on + strand, within MPMX19_05759 at 483.628 kb on + strand, within MPMX19_05759 at 483.629 kb on - strand, within MPMX19_05759 at 483.629 kb on - strand, within MPMX19_05759 at 483.629 kb on - strand, within MPMX19_05759 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.254 kb on + strand, within MPMX19_05760 at 484.255 kb on - strand, within MPMX19_05760 at 484.255 kb on - strand, within MPMX19_05760 at 484.255 kb on - strand, within MPMX19_05760 at 484.294 kb on + strand, within MPMX19_05760 at 484.294 kb on + strand, within MPMX19_05760 at 484.294 kb on + strand, within MPMX19_05760 at 484.294 kb on + strand, within MPMX19_05760 at 484.294 kb on + strand, within MPMX19_05760 at 484.295 kb on - strand, within MPMX19_05760 at 484.295 kb on - strand, within MPMX19_05760 at 484.295 kb on - strand, within MPMX19_05760 at 484.295 kb on - strand, within MPMX19_05760 at 484.295 kb on - strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.297 kb on - strand, within MPMX19_05760 at 484.297 kb on - strand, within MPMX19_05760 at 484.297 kb on - strand, within MPMX19_05760 at 484.510 kb on + strand at 484.510 kb on + strand at 484.510 kb on + strand at 484.510 kb on + strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.513 kb on - strand at 484.519 kb on + strand at 484.520 kb on - strand at 484.526 kb on + strand at 484.526 kb on + strand at 484.528 kb on + strand at 484.529 kb on - strand at 484.529 kb on - strand at 484.565 kb on + strand at 484.565 kb on + strand at 484.565 kb on + strand at 484.588 kb on + strand at 484.588 kb on + strand at 484.589 kb on - strand at 484.589 kb on - strand at 484.599 kb on + strand at 484.599 kb on + strand at 484.599 kb on + strand at 484.600 kb on - strand at 484.600 kb on - strand at 484.600 kb on - strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.604 kb on - strand at 484.604 kb on - strand at 484.604 kb on - strand at 484.604 kb on - strand at 484.604 kb on - strand at 484.604 kb on - strand at 484.606 kb on + strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.776 kb on + strand at 484.777 kb on - strand at 484.799 kb on + strand at 484.817 kb on + strand at 484.820 kb on - strand at 484.820 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 482,129 + +0.0 482,129 + -3.0 482,462 + +0.4 482,462 + +0.2 482,462 + -0.7 482,462 + +0.4 482,463 - -0.6 482,463 - +1.8 482,531 + +0.4 482,531 + -1.8 482,531 + +1.0 482,531 + -0.3 482,531 + -0.8 482,531 + -1.1 482,531 + +1.1 482,531 + -0.4 482,531 + -2.4 482,531 + -0.7 482,531 + -1.3 482,531 + -0.4 482,532 - -0.1 482,532 - +0.5 482,532 - -1.3 482,532 - +0.0 482,532 - -2.3 482,532 - +0.2 482,678 + +0.7 482,679 - -1.0 482,679 - -1.1 482,701 + +1.4 482,701 + -1.3 482,701 + -1.7 482,701 + -0.4 482,701 + -0.8 482,702 - -0.5 482,702 - +0.2 482,975 + -0.5 482,976 - -1.6 482,976 - -1.8 483,046 + MPMX19_05759 0.11 -1.6 483,046 + MPMX19_05759 0.11 -0.8 483,046 + MPMX19_05759 0.11 -1.4 483,046 + MPMX19_05759 0.11 +0.4 483,047 - MPMX19_05759 0.11 -0.7 483,047 - MPMX19_05759 0.11 +0.0 483,047 - MPMX19_05759 0.11 -1.3 483,070 + MPMX19_05759 0.13 -0.1 483,070 + MPMX19_05759 0.13 -1.4 483,070 + MPMX19_05759 0.13 -1.1 483,070 + MPMX19_05759 0.13 -0.6 483,070 + MPMX19_05759 0.13 -1.6 483,070 + MPMX19_05759 0.13 -0.7 483,070 + MPMX19_05759 0.13 -1.1 483,070 + MPMX19_05759 0.13 -0.4 483,070 + MPMX19_05759 0.13 -1.9 483,070 + MPMX19_05759 0.13 +0.7 483,070 + MPMX19_05759 0.13 +1.4 483,070 + MPMX19_05759 0.13 -1.3 483,070 + MPMX19_05759 0.13 +1.6 483,070 + MPMX19_05759 0.13 +0.2 483,070 + MPMX19_05759 0.13 -0.7 483,070 + MPMX19_05759 0.13 -1.0 483,070 + MPMX19_05759 0.13 +0.6 483,070 + MPMX19_05759 0.13 -0.6 483,070 + MPMX19_05759 0.13 -1.1 483,071 - MPMX19_05759 0.14 -0.8 483,071 - MPMX19_05759 0.14 -0.1 483,071 - MPMX19_05759 0.14 -0.8 483,071 - MPMX19_05759 0.14 +0.0 483,071 - MPMX19_05759 0.14 +0.3 483,071 - MPMX19_05759 0.14 -1.3 483,071 - MPMX19_05759 0.14 -0.7 483,071 - MPMX19_05759 0.14 -0.3 483,071 - MPMX19_05759 0.14 +0.0 483,071 - MPMX19_05759 0.14 +0.3 483,071 - MPMX19_05759 0.14 -0.1 483,265 + MPMX19_05759 0.34 -1.0 483,265 + MPMX19_05759 0.34 +0.4 483,265 + MPMX19_05759 0.34 +0.3 483,265 + MPMX19_05759 0.34 -0.8 483,265 + MPMX19_05759 0.34 +0.4 483,265 + MPMX19_05759 0.34 -0.7 483,265 + MPMX19_05759 0.34 +0.2 483,265 + MPMX19_05759 0.34 -1.8 483,265 + MPMX19_05759 0.34 -0.7 483,265 + MPMX19_05759 0.34 -1.9 483,265 + MPMX19_05759 0.34 -1.1 483,265 + MPMX19_05759 0.34 -1.1 483,265 + MPMX19_05759 0.34 -1.0 483,265 + MPMX19_05759 0.34 -0.6 483,265 + MPMX19_05759 0.34 +0.0 483,265 + MPMX19_05759 0.34 +0.2 483,265 + MPMX19_05759 0.34 -0.7 483,265 + MPMX19_05759 0.34 -0.6 483,265 + MPMX19_05759 0.34 -0.6 483,265 + MPMX19_05759 0.34 -0.4 483,265 + MPMX19_05759 0.34 +0.0 483,266 - MPMX19_05759 0.34 -1.1 483,266 - MPMX19_05759 0.34 -0.6 483,266 - MPMX19_05759 0.34 -0.1 483,266 - MPMX19_05759 0.34 +0.3 483,266 - MPMX19_05759 0.34 +0.1 483,266 - MPMX19_05759 0.34 -0.7 483,266 - MPMX19_05759 0.34 -0.1 483,266 - MPMX19_05759 0.34 -0.8 483,266 - MPMX19_05759 0.34 -1.0 483,266 - MPMX19_05759 0.34 -1.6 483,266 - MPMX19_05759 0.34 -0.3 483,266 - MPMX19_05759 0.34 -1.5 483,266 - MPMX19_05759 0.34 +0.0 483,266 - MPMX19_05759 0.34 -1.7 483,266 - MPMX19_05759 0.34 -0.8 483,484 + MPMX19_05759 0.57 -0.1 483,484 + MPMX19_05759 0.57 -1.3 483,484 + MPMX19_05759 0.57 -1.3 483,484 + MPMX19_05759 0.57 +0.3 483,484 + MPMX19_05759 0.57 -0.9 483,484 + MPMX19_05759 0.57 -0.4 483,484 + MPMX19_05759 0.57 -0.1 483,484 + MPMX19_05759 0.57 -1.3 483,484 + MPMX19_05759 0.57 -1.6 483,484 + MPMX19_05759 0.57 +2.4 483,484 + MPMX19_05759 0.57 +0.2 483,484 + MPMX19_05759 0.57 +0.2 483,485 - MPMX19_05759 0.57 -0.7 483,485 - MPMX19_05759 0.57 -1.1 483,485 - MPMX19_05759 0.57 +1.0 483,485 - MPMX19_05759 0.57 -0.4 483,485 - MPMX19_05759 0.57 -1.1 483,485 - MPMX19_05759 0.57 +0.0 483,485 - MPMX19_05759 0.57 +1.0 483,485 - MPMX19_05759 0.57 -1.1 483,485 - MPMX19_05759 0.57 -1.2 483,485 - MPMX19_05759 0.57 -1.3 483,485 - MPMX19_05759 0.57 -0.2 483,485 - MPMX19_05759 0.57 -2.1 483,485 - MPMX19_05759 0.57 -0.6 483,628 + MPMX19_05759 0.72 -1.4 483,628 + MPMX19_05759 0.72 -0.6 483,628 + MPMX19_05759 0.72 +2.0 483,629 - MPMX19_05759 0.72 -0.6 483,629 - MPMX19_05759 0.72 +0.2 483,629 - MPMX19_05759 0.72 -0.8 484,005 + MPMX19_05760 0.11 -0.5 484,005 + MPMX19_05760 0.11 -0.1 484,005 + MPMX19_05760 0.11 +1.0 484,005 + MPMX19_05760 0.11 -0.2 484,005 + MPMX19_05760 0.11 -0.1 484,005 + MPMX19_05760 0.11 -1.1 484,005 + MPMX19_05760 0.11 +0.3 484,006 - MPMX19_05760 0.12 +0.4 484,006 - MPMX19_05760 0.12 -0.3 484,006 - MPMX19_05760 0.12 -1.4 484,006 - MPMX19_05760 0.12 -0.8 484,006 - MPMX19_05760 0.12 +0.2 484,006 - MPMX19_05760 0.12 -2.0 484,006 - MPMX19_05760 0.12 -1.9 484,254 + MPMX19_05760 0.56 -0.3 484,255 - MPMX19_05760 0.56 -0.9 484,255 - MPMX19_05760 0.56 +0.1 484,255 - MPMX19_05760 0.56 +0.0 484,294 + MPMX19_05760 0.63 +0.8 484,294 + MPMX19_05760 0.63 -0.8 484,294 + MPMX19_05760 0.63 +3.0 484,294 + MPMX19_05760 0.63 -0.7 484,294 + MPMX19_05760 0.63 -1.1 484,295 - MPMX19_05760 0.63 -0.6 484,295 - MPMX19_05760 0.63 +1.0 484,295 - MPMX19_05760 0.63 +0.0 484,295 - MPMX19_05760 0.63 -0.7 484,295 - MPMX19_05760 0.63 -0.3 484,296 + MPMX19_05760 0.64 +1.6 484,296 + MPMX19_05760 0.64 -0.6 484,296 + MPMX19_05760 0.64 -0.1 484,296 + MPMX19_05760 0.64 -1.1 484,296 + MPMX19_05760 0.64 -0.5 484,296 + MPMX19_05760 0.64 -1.0 484,296 + MPMX19_05760 0.64 +0.4 484,296 + MPMX19_05760 0.64 -1.9 484,296 + MPMX19_05760 0.64 -0.3 484,296 + MPMX19_05760 0.64 -1.4 484,297 - MPMX19_05760 0.64 -1.2 484,297 - MPMX19_05760 0.64 -0.2 484,297 - MPMX19_05760 0.64 +0.2 484,510 + -0.4 484,510 + +0.2 484,510 + -1.2 484,510 + +0.3 484,511 - +0.1 484,511 - +0.6 484,511 - -1.4 484,511 - -1.0 484,511 - -0.9 484,511 - -0.1 484,511 - -0.6 484,513 - -0.6 484,519 + -0.6 484,520 - -0.6 484,526 + -0.8 484,526 + +0.4 484,528 + -0.8 484,529 - -1.4 484,529 - -0.4 484,565 + +0.3 484,565 + -1.2 484,565 + -2.7 484,588 + -0.8 484,588 + -1.2 484,589 - -0.8 484,589 - -2.7 484,599 + -1.5 484,599 + -0.3 484,599 + -0.6 484,600 - -1.2 484,600 - -1.3 484,600 - -0.6 484,603 + +0.2 484,603 + +0.3 484,603 + -1.0 484,603 + +0.2 484,603 + -1.0 484,603 + -1.4 484,603 + -1.9 484,603 + -0.7 484,603 + -1.5 484,603 + -0.2 484,603 + +0.2 484,604 - +0.5 484,604 - -1.3 484,604 - -1.3 484,604 - -0.6 484,604 - +0.4 484,604 - -1.3 484,606 + -1.1 484,607 - -1.4 484,607 - +0.7 484,607 - -1.1 484,607 - -0.9 484,607 - -1.1 484,607 - -0.2 484,607 - -0.8 484,776 + -2.2 484,777 - +1.5 484,799 + -0.3 484,817 + +0.4 484,820 - -1.0 484,820 - -0.3
Or see this region's nucleotide sequence